Wall clock time and date at job start Tue Mar 31 2020 11:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00348 * 2 1 4 4 H 1.48504 * 109.47146 * 240.00001 * 3 2 1 5 5 H 1.48498 * 109.47185 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47254 * 120.00046 * 3 2 1 7 7 C 1.37885 * 119.99632 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.84826 * 180.02562 * 7 2 1 9 9 C 1.53223 * 108.53637 * 128.63056 * 8 7 2 10 10 C 1.52967 * 109.40293 * 54.62655 * 9 8 7 11 11 H 1.08995 * 109.35747 * 56.47348 * 10 9 8 12 12 N 1.46906 * 109.41251 * 176.29649 * 10 9 8 13 13 C 1.46902 * 110.99573 * 275.35261 * 12 10 9 14 14 C 1.53120 * 109.52258 * 274.68096 * 13 12 10 15 15 C 1.53037 * 109.27582 * 182.44437 * 14 13 12 16 16 N 1.46850 * 109.52622 * 59.18051 * 15 14 13 17 17 C 1.38397 * 111.00058 * 174.15865 * 16 15 14 18 18 N 1.32497 * 119.21917 * 123.93932 * 17 16 15 19 19 C 1.32281 * 120.74299 * 179.71606 * 18 17 16 20 20 C 1.38606 * 119.19508 * 0.54670 * 19 18 17 21 21 C 1.38605 * 118.55793 * 359.73150 * 20 19 18 22 22 N 1.32283 * 119.19968 * 359.97438 * 21 20 19 23 23 C 1.46845 * 111.19615 * 298.25935 * 16 15 14 24 24 C 1.53038 * 109.52638 * 61.74020 * 23 16 15 25 25 C 1.52961 * 109.81697 * 296.39893 * 10 9 8 26 26 C 1.51273 * 120.84766 * 0.02562 * 7 2 1 27 27 H 0.96998 * 119.99237 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.62037 * 248.34473 * 8 7 2 29 29 H 1.08999 * 109.62734 * 8.91616 * 8 7 2 30 30 H 1.08996 * 109.48598 * 294.65160 * 9 8 7 31 31 H 1.08999 * 109.48433 * 174.60439 * 9 8 7 32 32 H 1.00896 * 111.00309 * 151.39673 * 12 10 9 33 33 H 1.08994 * 109.52613 * 34.87665 * 13 12 10 34 34 H 1.09000 * 109.50274 * 302.38257 * 14 13 12 35 35 H 1.08996 * 109.49940 * 62.50376 * 14 13 12 36 36 H 1.08998 * 109.46644 * 299.16234 * 15 14 13 37 37 H 1.08998 * 109.46139 * 179.19747 * 15 14 13 38 38 H 1.07994 * 120.39964 * 180.25463 * 19 18 17 39 39 H 1.07999 * 120.71735 * 179.70953 * 20 19 18 40 40 H 1.08000 * 120.40047 * 179.97438 * 21 20 19 41 41 H 1.09005 * 109.46028 * 301.72276 * 23 16 15 42 42 H 1.09004 * 109.45920 * 181.75998 * 23 16 15 43 43 H 1.09000 * 109.50264 * 180.88154 * 24 23 16 44 44 H 1.09000 * 109.53269 * 60.77928 * 24 23 16 45 45 H 1.09004 * 109.48052 * 183.57687 * 25 10 9 46 46 H 1.09001 * 109.48334 * 303.60548 * 25 10 9 47 47 H 1.08997 * 109.62506 * 111.65549 * 26 7 2 48 48 H 1.09000 * 109.62864 * 351.08289 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1942 0.0005 8 6 3.5171 -1.2167 0.0011 9 6 3.9902 -2.1305 1.1364 10 6 3.3394 -3.5066 0.9858 11 1 3.5737 -3.9113 0.0013 12 7 3.8603 -4.4090 2.0213 13 6 5.1263 -5.0217 1.5972 14 6 4.8353 -6.2701 0.7598 15 6 6.1567 -6.9379 0.3724 16 7 6.8968 -7.3030 1.5871 17 6 8.0354 -8.0255 1.2758 18 7 9.2134 -7.5899 1.6980 19 6 10.3203 -8.2596 1.4226 20 6 10.2380 -9.4230 0.6737 21 6 8.9906 -9.8472 0.2433 22 7 7.9222 -9.1337 0.5585 23 6 7.2287 -6.1150 2.3838 24 6 5.9393 -5.4226 2.8313 25 6 1.8223 -3.3820 1.1363 26 6 1.2676 -2.5152 0.0005 27 1 -0.4849 0.8401 -0.0004 28 1 3.8778 -1.6012 -0.9529 29 1 3.8982 -0.2079 0.1602 30 1 3.7055 -1.6967 2.0949 31 1 5.0743 -2.2343 1.0917 32 1 3.1800 -5.1142 2.2620 33 1 5.6954 -4.3074 1.0024 34 1 4.2326 -6.9668 1.3424 35 1 4.2935 -5.9851 -0.1420 36 1 6.7530 -6.2455 -0.2219 37 1 5.9526 -7.8350 -0.2120 38 1 11.2771 -7.9017 1.7729 39 1 11.1267 -9.9866 0.4306 40 1 8.8921 -10.7492 -0.3423 41 1 7.8200 -5.4264 1.7802 42 1 7.8032 -6.4145 3.2604 43 1 6.1862 -4.5322 3.4095 44 1 5.3537 -6.1055 3.4468 45 1 1.3700 -4.3727 1.0916 46 1 1.5889 -2.9187 2.0950 47 1 1.4204 -3.0197 -0.9535 48 1 0.2034 -2.3408 0.1592 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256046825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:21 Heat of formation + Delta-G solvation = 33.713248 kcal Electronic energy + Delta-G solvation = -26545.890861 eV Core-core repulsion = 23020.444471 eV Total energy + Delta-G solvation = -3525.446391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23379 -40.28746 -38.81820 -36.32192 -34.74911 -34.22558 -32.57771 -31.95613 -31.48522 -30.65827 -28.18961 -25.82086 -25.28819 -23.91257 -23.63444 -23.28547 -22.69046 -21.00698 -20.69482 -18.97396 -18.38383 -18.00236 -16.86452 -16.53705 -16.41036 -16.32633 -16.08935 -15.56029 -15.40055 -15.18306 -14.70775 -14.61055 -14.47031 -14.39909 -14.27284 -14.13713 -13.77449 -13.27945 -13.13249 -12.69935 -12.68439 -12.59285 -12.32227 -12.14446 -11.96632 -11.90579 -11.88491 -11.85182 -11.64295 -11.45987 -11.41453 -11.11814 -10.75481 -10.53701 -10.46327 -10.15569 -9.41410 -9.19813 -8.16351 -6.09269 -0.00728 0.20449 1.38864 1.39709 1.47728 2.13842 2.40922 2.80692 3.05702 3.21683 3.27551 3.59420 3.80691 3.83103 3.87787 4.04761 4.16988 4.19316 4.26514 4.28759 4.32679 4.39586 4.51071 4.54501 4.59059 4.71527 4.79145 4.80275 4.82985 4.93622 4.96393 5.01555 5.06662 5.15032 5.18549 5.23623 5.26712 5.30010 5.34645 5.42056 5.64629 5.64746 5.65691 5.76812 5.78396 5.91363 6.28435 6.28833 6.37889 6.62779 6.96868 7.16812 7.48093 8.94863 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029331 B = 0.002502 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.408286 B =11188.853974 C =11491.974701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.497 4.497 8 C -0.015 4.015 9 C -0.085 4.085 10 C 0.114 3.886 11 H 0.031 0.969 12 N -0.681 5.681 13 C 0.089 3.911 14 C -0.137 4.137 15 C 0.083 3.917 16 N -0.468 5.468 17 C 0.471 3.529 18 N -0.574 5.574 19 C 0.158 3.842 20 C -0.248 4.248 21 C 0.159 3.841 22 N -0.560 5.560 23 C 0.083 3.917 24 C -0.096 4.096 25 C -0.097 4.097 26 C 0.007 3.993 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.343 0.657 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.198 0.802 39 H 0.185 0.815 40 H 0.200 0.800 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.041 0.959 47 H -0.002 1.002 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.904 -19.804 2.499 29.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.516 4.516 8 C -0.053 4.053 9 C -0.124 4.124 10 C 0.005 3.995 11 H 0.049 0.951 12 N -0.311 5.311 13 C -0.022 4.022 14 C -0.177 4.177 15 C -0.044 4.044 16 N -0.188 5.188 17 C 0.115 3.885 18 N -0.295 5.295 19 C -0.008 4.008 20 C -0.271 4.271 21 C -0.007 4.007 22 N -0.279 5.279 23 C -0.044 4.044 24 C -0.135 4.135 25 C -0.136 4.136 26 C -0.031 4.031 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.163 0.837 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.215 0.785 39 H 0.202 0.798 40 H 0.216 0.784 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 20.841 -18.899 3.379 28.336 hybrid contribution 0.613 0.404 -1.307 1.499 sum 21.454 -18.495 2.072 28.401 Atomic orbital electron populations 1.69966 1.07580 1.27411 1.52296 1.25608 0.95392 1.01740 0.95108 0.85813 0.78347 0.79555 0.79398 1.19252 1.22075 1.19123 1.20658 0.91207 0.91892 1.47833 1.19683 0.94737 0.95622 0.95289 1.21424 0.97486 0.94971 0.98509 1.21133 0.93788 0.92708 0.91852 0.95109 1.60594 1.06060 1.22630 1.41832 1.21655 0.91537 0.93586 0.95401 1.22292 0.96443 0.97801 1.01140 1.21995 0.94014 1.00089 0.88310 1.58408 1.16733 1.23249 1.20376 1.21211 0.88123 0.90044 0.89120 1.68415 0.99155 1.34912 1.26991 1.23744 0.96915 0.90211 0.89887 1.23135 1.01289 1.00224 1.02440 1.23769 0.87286 0.97318 0.92315 1.68038 1.35802 1.07085 1.16927 1.21944 0.96990 0.88155 0.97341 1.21550 0.94461 1.00280 0.97179 1.21609 0.94584 0.98028 0.99361 1.19332 0.96953 0.93652 0.93115 0.92887 0.96282 0.95774 0.93884 0.93213 0.83740 0.91639 0.90279 0.91070 0.94454 0.89180 0.78542 0.79801 0.78377 0.93699 0.89430 0.90001 0.90967 0.93171 0.94000 0.98347 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 12.73 21.45 0.27 -55.57 16 2 C 0.02 1.09 5.46 84.66 0.46 1.55 16 3 Si 0.94 44.58 26.80 68.60 1.84 46.42 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.50 -26.60 5.51 -16.17 -0.09 -26.68 16 8 C -0.02 -0.70 5.59 30.10 0.17 -0.54 16 9 C -0.09 -3.43 5.43 30.66 0.17 -3.26 16 10 C 0.11 4.18 2.21 44.89 0.10 4.27 16 11 H 0.03 1.15 7.16 -2.39 -0.02 1.13 16 12 N -0.68 -20.23 6.06 -469.17 -2.84 -23.07 16 13 C 0.09 2.25 2.33 45.00 0.10 2.36 16 14 C -0.14 -3.20 5.34 30.65 0.16 -3.04 16 15 C 0.08 1.91 5.33 86.33 0.46 2.37 16 16 N -0.47 -11.24 4.72 -708.92 -3.34 -14.58 16 17 C 0.47 11.23 7.17 261.49 1.88 13.10 16 18 N -0.57 -12.19 8.68 -197.99 -1.72 -13.91 16 19 C 0.16 2.10 11.30 84.71 0.96 3.06 16 20 C -0.25 -2.35 10.16 22.45 0.23 -2.12 16 21 C 0.16 2.14 11.30 84.71 0.96 3.10 16 22 N -0.56 -12.26 9.66 -197.99 -1.91 -14.17 16 23 C 0.08 1.86 4.63 86.33 0.40 2.26 16 24 C -0.10 -2.18 5.70 30.65 0.17 -2.00 16 25 C -0.10 -4.06 5.24 30.67 0.16 -3.90 16 26 C 0.01 0.38 5.97 30.12 0.18 0.56 16 27 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.02 1.09 5.17 -2.39 -0.01 1.08 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.78 7.36 -2.39 -0.02 1.76 16 32 H 0.34 9.47 8.01 -89.70 -0.72 8.76 16 33 H 0.07 1.84 7.07 -2.39 -0.02 1.82 16 34 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.07 1.74 7.48 -2.39 -0.02 1.72 16 36 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 2.10 7.55 -2.39 -0.02 2.08 16 38 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 40 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 41 H 0.04 1.06 8.10 -2.38 -0.02 1.04 16 42 H 0.09 1.96 7.69 -2.38 -0.02 1.94 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.05 1.83 8.05 -2.38 -0.02 1.81 16 46 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 48 H 0.02 1.42 7.07 -2.39 -0.02 1.40 16 Total: -1.00 -67.05 366.92 -1.00 -68.05 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.23 Total: 15.73 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 6.47 Total: -8.90 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -9.54 Total: -121.29 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.84 Total: 46.42 kcal Total: -67.05 -1.00 -68.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256046825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.762 kcal (2) G-P(sol) polarization free energy of solvation -67.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds