Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48504 * 109.47205 * 274.87020 * 3 2 1 5 5 H 1.48491 * 109.47188 * 34.87513 * 3 2 1 6 6 H 1.48502 * 109.46733 * 154.87459 * 3 2 1 7 7 C 1.37878 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 355.19751 * 7 2 1 9 9 C 1.50700 * 120.00268 * 175.20132 * 7 2 1 10 10 N 1.46908 * 110.01458 * 65.62016 * 9 7 2 11 11 C 1.46897 * 110.99970 * 65.34292 * 10 9 7 12 12 C 1.53122 * 109.52076 * 149.35497 * 11 10 9 13 13 C 1.53043 * 109.30976 * 177.58327 * 12 11 10 14 14 N 1.46849 * 109.51948 * 300.79975 * 13 12 11 15 15 C 1.38408 * 111.00062 * 185.84284 * 14 13 12 16 16 N 1.32492 * 119.21587 * 359.72610 * 15 14 13 17 17 C 1.32275 * 120.74208 * 179.71629 * 16 15 14 18 18 C 1.38605 * 119.19443 * 0.55419 * 17 16 15 19 19 C 1.38604 * 118.55966 * 359.72373 * 18 17 16 20 20 N 1.32283 * 119.19600 * 0.02562 * 19 18 17 21 21 C 1.46850 * 111.20078 * 61.74628 * 14 13 12 22 22 C 1.53048 * 109.51853 * 298.25663 * 21 14 13 23 23 C 1.54266 * 110.03256 * 187.00856 * 9 7 2 24 24 C 1.54967 * 104.15593 * 95.75830 * 23 9 7 25 25 C 1.54880 * 102.77896 * 37.88707 * 24 23 9 26 26 C 1.53867 * 110.03217 * 304.23312 * 9 7 2 27 27 H 0.97001 * 119.99686 * 359.97438 * 1 2 3 28 28 H 1.00900 * 110.99340 * 189.29632 * 10 9 7 29 29 H 1.09005 * 109.57453 * 29.20237 * 11 10 9 30 30 H 1.08993 * 109.50438 * 57.62012 * 12 11 10 31 31 H 1.09004 * 109.50573 * 297.53586 * 12 11 10 32 32 H 1.08999 * 109.46700 * 60.81461 * 13 12 11 33 33 H 1.08998 * 109.46284 * 180.78892 * 13 12 11 34 34 H 1.07997 * 120.40305 * 180.30399 * 17 16 15 35 35 H 1.07999 * 120.72281 * 179.70956 * 18 17 16 36 36 H 1.08000 * 120.40516 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46187 * 58.26872 * 21 14 13 38 38 H 1.08992 * 109.46376 * 178.24065 * 21 14 13 39 39 H 1.09002 * 109.49757 * 179.12195 * 22 21 14 40 40 H 1.09000 * 109.50032 * 299.19535 * 22 21 14 41 41 H 1.09007 * 110.48403 * 214.40072 * 23 9 7 42 42 H 1.08995 * 110.49194 * 337.04514 * 23 9 7 43 43 H 1.09004 * 110.71686 * 279.57082 * 24 23 9 44 44 H 1.09005 * 110.92295 * 156.29694 * 24 23 9 45 45 H 1.09006 * 110.48844 * 203.40978 * 25 24 23 46 46 H 1.08999 * 110.49166 * 80.76588 * 25 24 23 47 47 H 1.09000 * 110.03356 * 359.94289 * 26 9 7 48 48 H 1.08995 * 110.03945 * 121.38384 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3937 2.1059 -1.3950 5 1 1.5020 2.6207 0.8005 6 1 3.5944 1.4125 0.5945 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1278 0.0774 9 6 3.5075 -1.1964 -0.1097 10 7 4.0993 -0.5758 1.0832 11 6 3.8269 -1.3775 2.2836 12 6 4.9773 -1.2128 3.2807 13 6 4.6606 -2.0014 4.5535 14 7 3.4081 -1.5061 5.1387 15 6 3.1593 -2.1078 6.3601 16 7 4.0169 -3.0037 6.8263 17 6 3.8117 -3.5931 7.9926 18 6 2.6781 -3.2717 8.7224 19 6 1.7990 -2.3346 8.2027 20 7 2.0662 -1.7786 7.0325 21 6 2.2798 -1.6973 4.2184 22 6 2.5255 -0.8996 2.9356 23 6 4.0239 -2.6418 -0.2647 24 6 4.1846 -2.8248 -1.7951 25 6 4.7137 -1.4426 -2.2517 26 6 3.9454 -0.4341 -1.3725 27 1 -0.4850 0.8401 0.0004 28 1 5.0905 -0.4318 0.9617 29 1 3.7317 -2.4277 2.0076 30 1 5.0974 -0.1578 3.5267 31 1 5.8991 -1.5907 2.8385 32 1 4.5541 -3.0583 4.3090 33 1 5.4716 -1.8745 5.2706 34 1 4.5168 -4.3191 8.3696 35 1 2.4837 -3.7414 9.6753 36 1 0.9063 -2.0622 8.7460 37 1 2.1846 -2.7556 3.9754 38 1 1.3619 -1.3495 4.6921 39 1 1.6953 -1.0541 2.2464 40 1 2.6064 0.1605 3.1761 41 1 4.9848 -2.7594 0.2364 42 1 3.2970 -3.3511 0.1309 43 1 3.2234 -3.0435 -2.2604 44 1 4.9080 -3.6087 -2.0196 45 1 4.4899 -1.2776 -3.3057 46 1 5.7860 -1.3661 -2.0719 47 1 3.0708 -0.0634 -1.9070 48 1 4.5971 0.3961 -1.1005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256057029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = 77.952180 kcal Electronic energy + Delta-G solvation = -27828.353779 eV Core-core repulsion = 24304.825732 eV Total energy + Delta-G solvation = -3523.528047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.20503 -39.03259 -37.71760 -34.45966 -33.78090 -32.35412 -31.51900 -30.46380 -29.54212 -28.01752 -26.88254 -24.78711 -24.24611 -23.36161 -22.34888 -21.85365 -20.19408 -19.07685 -18.68592 -17.82034 -17.39471 -16.36513 -15.81054 -15.28045 -15.06589 -14.87815 -14.64566 -14.25984 -14.12322 -14.05541 -13.56713 -13.40500 -12.98709 -12.88007 -12.60639 -12.24286 -12.05931 -11.61115 -11.35345 -11.22288 -11.00676 -10.89581 -10.83314 -10.71552 -10.46061 -10.40356 -10.18159 -10.00483 -9.94828 -9.77472 -9.71750 -9.64189 -9.40941 -9.15803 -8.89527 -8.36031 -8.26416 -6.96231 -5.96733 -3.99731 0.92981 1.07972 3.26614 3.52089 3.65484 3.76826 3.93027 4.12425 4.52777 4.71926 4.73973 4.93702 5.01794 5.07742 5.22530 5.31784 5.41455 5.50943 5.54407 5.58620 5.64190 5.67242 5.78618 5.78989 5.93832 6.07721 6.11807 6.17552 6.23618 6.29393 6.31840 6.42028 6.44961 6.49393 6.59942 6.61584 6.66317 6.72631 6.82864 6.88431 6.88633 7.02301 7.14385 7.27438 7.36645 7.50688 7.80766 8.13744 8.17433 8.48248 8.73633 9.03330 9.69945 11.12587 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.004030 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.956141 B = 6946.539374 C = 7706.825145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.088 3.912 3 Si 0.862 3.138 4 H -0.301 1.301 5 H -0.309 1.309 6 H -0.198 1.198 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.210 3.790 10 N -0.669 5.669 11 C 0.105 3.895 12 C -0.128 4.128 13 C 0.079 3.921 14 N -0.457 5.457 15 C 0.500 3.500 16 N -0.557 5.557 17 C 0.171 3.829 18 C -0.275 4.275 19 C 0.175 3.825 20 N -0.531 5.531 21 C 0.070 3.930 22 C -0.110 4.110 23 C -0.134 4.134 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.261 0.739 28 H 0.309 0.691 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.167 0.833 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -6.614 12.198 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.115 4.115 3 Si 0.691 3.309 4 H -0.229 1.229 5 H -0.237 1.237 6 H -0.120 1.120 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.121 3.879 10 N -0.299 5.299 11 C -0.005 4.005 12 C -0.166 4.166 13 C -0.049 4.049 14 N -0.176 5.176 15 C 0.144 3.856 16 N -0.277 5.277 17 C 0.004 3.996 18 C -0.299 4.299 19 C 0.006 3.994 20 N -0.249 5.249 21 C -0.056 4.056 22 C -0.148 4.148 23 C -0.173 4.173 24 C -0.153 4.153 25 C -0.158 4.158 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.184 0.816 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.528 -5.096 11.378 15.105 hybrid contribution 0.609 -0.890 0.766 1.323 sum 9.137 -5.986 12.144 16.334 Atomic orbital electron populations 1.69960 1.06824 1.27125 1.49865 1.24907 0.94282 0.99570 0.92762 0.87348 0.84858 0.81931 0.76765 1.22921 1.23684 1.11975 1.20667 0.87368 0.94002 1.51513 0.91429 1.19633 0.95492 0.87073 0.85659 1.61543 1.15323 1.49761 1.03306 1.21257 0.93595 0.95857 0.89816 1.22011 0.98651 1.01267 0.94682 1.21952 0.89489 0.97371 0.96048 1.58480 1.06688 1.51236 1.01161 1.21291 0.85593 0.85406 0.93263 1.68446 1.33538 1.09945 1.15756 1.23024 0.94277 0.94015 0.88293 1.22652 0.98671 1.04494 1.04072 1.23100 0.97355 0.89280 0.89653 1.68090 1.20118 1.27711 1.08974 1.22406 0.90964 0.99483 0.92704 1.21996 1.00560 0.98937 0.93307 1.22958 0.98492 1.00820 0.95050 1.22341 1.00153 0.95866 0.96924 1.22307 0.98460 0.96128 0.98900 1.22591 0.99245 0.97223 0.97257 0.92953 0.87352 0.93894 0.90709 0.91731 0.93303 0.90108 0.81874 0.83934 0.81571 0.94258 0.89302 0.86267 0.91831 0.94173 0.92319 0.91438 0.93590 0.92871 0.93099 0.91022 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.96 55.43 0.77 -25.79 16 2 C 0.09 2.40 4.42 -17.82 -0.08 2.32 16 3 Si 0.86 21.32 23.98 -169.99 -4.08 17.24 16 4 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 5 H -0.31 -8.08 7.11 56.52 0.40 -7.67 16 6 H -0.20 -4.51 4.97 56.52 0.28 -4.23 16 7 C -0.50 -12.69 6.07 -34.44 -0.21 -12.90 16 8 H 0.07 1.93 7.73 -52.48 -0.41 1.52 16 9 C 0.21 4.40 0.40 -131.64 -0.05 4.35 16 10 N -0.67 -13.05 2.89 -92.91 -0.27 -13.31 16 11 C 0.10 1.90 2.07 -67.55 -0.14 1.76 16 12 C -0.13 -1.95 5.30 -26.65 -0.14 -2.09 16 13 C 0.08 1.19 4.63 -3.83 -0.02 1.17 16 14 N -0.46 -7.67 4.72 -175.42 -0.83 -8.50 16 15 C 0.50 8.00 7.17 -322.81 -2.32 5.68 16 16 N -0.56 -7.89 8.68 -13.93 -0.12 -8.01 16 17 C 0.17 1.79 11.30 -17.23 -0.19 1.60 16 18 C -0.27 -2.50 10.16 -39.31 -0.40 -2.90 16 19 C 0.17 1.93 11.30 -17.22 -0.19 1.74 16 20 N -0.53 -8.13 9.65 -13.93 -0.13 -8.27 16 21 C 0.07 1.25 5.33 -3.83 -0.02 1.23 16 22 C -0.11 -2.20 5.34 -26.60 -0.14 -2.35 16 23 C -0.13 -2.50 4.41 -25.03 -0.11 -2.61 16 24 C -0.11 -1.98 6.91 -24.70 -0.17 -2.15 16 25 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 26 C -0.12 -2.54 4.13 -25.61 -0.11 -2.64 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.31 5.45 8.10 -39.29 -0.32 5.14 16 29 H 0.04 0.82 6.10 -51.93 -0.32 0.51 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 34 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.64 7.55 -51.93 -0.39 1.25 16 39 H 0.12 2.84 5.22 -51.93 -0.27 2.57 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.04 0.69 7.82 -51.93 -0.41 0.28 16 42 H 0.06 1.17 7.39 -51.93 -0.38 0.79 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.65 6.08 -51.93 -0.32 1.33 16 48 H 0.05 0.97 6.87 -51.93 -0.36 0.62 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -30.33 355.08 -11.66 -41.99 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.89 Total: 9.30 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -4.46 Total: -10.00 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.58 Total: -63.88 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.08 Total: 17.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.33 -11.66 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256057029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.940 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds