Wall clock time and date at job start Tue Mar 31 2020 11:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48504 * 109.47205 * 274.87020 * 3 2 1 5 5 H 1.48491 * 109.47188 * 34.87513 * 3 2 1 6 6 H 1.48502 * 109.46733 * 154.87459 * 3 2 1 7 7 C 1.37878 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00099 * 355.19751 * 7 2 1 9 9 C 1.50700 * 120.00268 * 175.20132 * 7 2 1 10 10 N 1.46908 * 110.01458 * 65.62016 * 9 7 2 11 11 C 1.46897 * 110.99970 * 65.34292 * 10 9 7 12 12 C 1.53122 * 109.52076 * 149.35497 * 11 10 9 13 13 C 1.53043 * 109.30976 * 177.58327 * 12 11 10 14 14 N 1.46849 * 109.51948 * 300.79975 * 13 12 11 15 15 C 1.38408 * 111.00062 * 185.84284 * 14 13 12 16 16 N 1.32492 * 119.21587 * 359.72610 * 15 14 13 17 17 C 1.32275 * 120.74208 * 179.71629 * 16 15 14 18 18 C 1.38605 * 119.19443 * 0.55419 * 17 16 15 19 19 C 1.38604 * 118.55966 * 359.72373 * 18 17 16 20 20 N 1.32283 * 119.19600 * 0.02562 * 19 18 17 21 21 C 1.46850 * 111.20078 * 61.74628 * 14 13 12 22 22 C 1.53048 * 109.51853 * 298.25663 * 21 14 13 23 23 C 1.54266 * 110.03256 * 187.00856 * 9 7 2 24 24 C 1.54967 * 104.15593 * 95.75830 * 23 9 7 25 25 C 1.54880 * 102.77896 * 37.88707 * 24 23 9 26 26 C 1.53867 * 110.03217 * 304.23312 * 9 7 2 27 27 H 0.97001 * 119.99686 * 359.97438 * 1 2 3 28 28 H 1.00900 * 110.99340 * 189.29632 * 10 9 7 29 29 H 1.09005 * 109.57453 * 29.20237 * 11 10 9 30 30 H 1.08993 * 109.50438 * 57.62012 * 12 11 10 31 31 H 1.09004 * 109.50573 * 297.53586 * 12 11 10 32 32 H 1.08999 * 109.46700 * 60.81461 * 13 12 11 33 33 H 1.08998 * 109.46284 * 180.78892 * 13 12 11 34 34 H 1.07997 * 120.40305 * 180.30399 * 17 16 15 35 35 H 1.07999 * 120.72281 * 179.70956 * 18 17 16 36 36 H 1.08000 * 120.40516 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46187 * 58.26872 * 21 14 13 38 38 H 1.08992 * 109.46376 * 178.24065 * 21 14 13 39 39 H 1.09002 * 109.49757 * 179.12195 * 22 21 14 40 40 H 1.09000 * 109.50032 * 299.19535 * 22 21 14 41 41 H 1.09007 * 110.48403 * 214.40072 * 23 9 7 42 42 H 1.08995 * 110.49194 * 337.04514 * 23 9 7 43 43 H 1.09004 * 110.71686 * 279.57082 * 24 23 9 44 44 H 1.09005 * 110.92295 * 156.29694 * 24 23 9 45 45 H 1.09006 * 110.48844 * 203.40978 * 25 24 23 46 46 H 1.08999 * 110.49166 * 80.76588 * 25 24 23 47 47 H 1.09000 * 110.03356 * 359.94289 * 26 9 7 48 48 H 1.08995 * 110.03945 * 121.38384 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3937 2.1059 -1.3950 5 1 1.5020 2.6207 0.8005 6 1 3.5944 1.4125 0.5945 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1278 0.0774 9 6 3.5075 -1.1964 -0.1097 10 7 4.0993 -0.5758 1.0832 11 6 3.8269 -1.3775 2.2836 12 6 4.9773 -1.2128 3.2807 13 6 4.6606 -2.0014 4.5535 14 7 3.4081 -1.5061 5.1387 15 6 3.1593 -2.1078 6.3601 16 7 4.0169 -3.0037 6.8263 17 6 3.8117 -3.5931 7.9926 18 6 2.6781 -3.2717 8.7224 19 6 1.7990 -2.3346 8.2027 20 7 2.0662 -1.7786 7.0325 21 6 2.2798 -1.6973 4.2184 22 6 2.5255 -0.8996 2.9356 23 6 4.0239 -2.6418 -0.2647 24 6 4.1846 -2.8248 -1.7951 25 6 4.7137 -1.4426 -2.2517 26 6 3.9454 -0.4341 -1.3725 27 1 -0.4850 0.8401 0.0004 28 1 5.0905 -0.4318 0.9617 29 1 3.7317 -2.4277 2.0076 30 1 5.0974 -0.1578 3.5267 31 1 5.8991 -1.5907 2.8385 32 1 4.5541 -3.0583 4.3090 33 1 5.4716 -1.8745 5.2706 34 1 4.5168 -4.3191 8.3696 35 1 2.4837 -3.7414 9.6753 36 1 0.9063 -2.0622 8.7460 37 1 2.1846 -2.7556 3.9754 38 1 1.3619 -1.3495 4.6921 39 1 1.6953 -1.0541 2.2464 40 1 2.6064 0.1605 3.1761 41 1 4.9848 -2.7594 0.2364 42 1 3.2970 -3.3511 0.1309 43 1 3.2234 -3.0435 -2.2604 44 1 4.9080 -3.6087 -2.0196 45 1 4.4899 -1.2776 -3.3057 46 1 5.7860 -1.3661 -2.0719 47 1 3.0708 -0.0634 -1.9070 48 1 4.5971 0.3961 -1.1005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256057029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:56 Heat of formation + Delta-G solvation = 58.943958 kcal Electronic energy + Delta-G solvation = -27829.178037 eV Core-core repulsion = 24304.825732 eV Total energy + Delta-G solvation = -3524.352305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21624 -40.47934 -39.10346 -35.80781 -34.74553 -34.35298 -32.79426 -31.85028 -30.82937 -29.53784 -28.60122 -25.83442 -25.71713 -24.76511 -23.67447 -23.08973 -21.63699 -20.55794 -20.41806 -18.90145 -18.40821 -18.22968 -16.82988 -16.64018 -16.43297 -16.38510 -15.93570 -15.61439 -15.58461 -15.42646 -14.76384 -14.70271 -14.41554 -14.37455 -14.03744 -13.95491 -13.49659 -13.13633 -12.89041 -12.81688 -12.66387 -12.21833 -12.04335 -11.99994 -11.89650 -11.84699 -11.69349 -11.63577 -11.38478 -11.29546 -11.21051 -11.12586 -11.06423 -10.80641 -10.45136 -10.13014 -9.38012 -8.59881 -8.13532 -6.15362 -0.00321 0.22264 1.48160 1.58897 1.90589 2.18439 2.63157 2.82377 3.19969 3.25080 3.59029 3.63772 3.83106 3.92499 4.00207 4.06797 4.07689 4.20487 4.26298 4.29707 4.35138 4.39235 4.44532 4.63610 4.69041 4.73877 4.80452 4.86174 4.87944 4.90214 4.94054 4.99185 5.06518 5.09683 5.17067 5.18845 5.26175 5.33978 5.37357 5.50596 5.53448 5.59800 5.68994 5.79396 5.83776 5.91423 6.22545 6.32502 6.71217 6.82214 7.18743 7.19416 7.56799 9.00208 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.004030 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.956141 B = 6946.539374 C = 7706.825145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.041 3.959 3 Si 0.909 3.091 4 H -0.305 1.305 5 H -0.332 1.332 6 H -0.160 1.160 7 C -0.475 4.475 8 H 0.021 0.979 9 C 0.209 3.791 10 N -0.678 5.678 11 C 0.111 3.889 12 C -0.115 4.115 13 C 0.087 3.913 14 N -0.470 5.470 15 C 0.473 3.527 16 N -0.571 5.571 17 C 0.160 3.840 18 C -0.248 4.248 19 C 0.157 3.843 20 N -0.568 5.568 21 C 0.088 3.912 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.331 0.669 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.203 0.797 35 H 0.188 0.812 36 H 0.197 0.803 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.034 0.966 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.037 0.963 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.011 -7.781 14.018 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.156 4.156 3 Si 0.738 3.262 4 H -0.233 1.233 5 H -0.263 1.263 6 H -0.080 1.080 7 C -0.513 4.513 8 H 0.040 0.960 9 C 0.119 3.881 10 N -0.310 5.310 11 C 0.001 3.999 12 C -0.153 4.153 13 C -0.041 4.041 14 N -0.189 5.189 15 C 0.117 3.883 16 N -0.291 5.291 17 C -0.007 4.007 18 C -0.271 4.271 19 C -0.010 4.010 20 N -0.287 5.287 21 C -0.039 4.039 22 C -0.140 4.140 23 C -0.168 4.168 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.167 4.167 27 H 0.063 0.937 28 H 0.150 0.850 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.220 0.780 35 H 0.205 0.795 36 H 0.213 0.787 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.056 0.944 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.617 -6.296 13.233 19.338 hybrid contribution -0.743 -0.706 0.387 1.095 sum 11.874 -7.002 13.620 19.379 Atomic orbital electron populations 1.70106 1.08697 1.27213 1.53488 1.25520 0.94494 1.02469 0.93136 0.86712 0.85336 0.78076 0.76113 1.23347 1.26266 1.08011 1.20833 0.90254 0.91595 1.48662 0.96050 1.19509 0.92406 0.89341 0.86817 1.61161 1.16769 1.50079 1.02951 1.21172 0.93863 0.94850 0.90019 1.21913 0.98180 1.01391 0.93840 1.21915 0.89168 0.96921 0.96054 1.58412 1.06287 1.52829 1.01408 1.21219 0.86910 0.87001 0.93203 1.68419 1.33354 1.09844 1.17526 1.23806 0.95542 0.94035 0.87268 1.23130 0.96781 1.02301 1.04868 1.23762 0.98901 0.89564 0.88736 1.68041 1.20569 1.29217 1.10907 1.21994 0.91538 0.98200 0.92139 1.21729 1.00260 0.98287 0.93679 1.22853 0.98969 0.98293 0.96660 1.22337 1.00071 0.97429 0.95267 1.22285 0.99738 0.94136 0.98691 1.22518 0.98711 0.98569 0.96907 0.93654 0.84979 0.94753 0.90970 0.88678 0.93744 0.88898 0.77988 0.79498 0.78671 0.95140 0.90843 0.90909 0.93496 0.91361 0.94747 0.93777 0.90238 0.91869 0.89805 0.94447 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 2 C 0.04 2.38 4.42 84.65 0.37 2.75 16 3 Si 0.91 45.38 23.98 68.60 1.64 47.03 16 4 H -0.31 -15.31 7.11 99.48 0.71 -14.61 16 5 H -0.33 -17.86 7.11 99.48 0.71 -17.15 16 6 H -0.16 -6.94 4.97 99.48 0.49 -6.45 16 7 C -0.48 -25.52 6.07 25.60 0.16 -25.36 16 8 H 0.02 1.32 7.73 -2.91 -0.02 1.29 16 9 C 0.21 8.64 0.40 3.50 0.00 8.65 16 10 N -0.68 -25.37 2.89 -447.86 -1.29 -26.66 16 11 C 0.11 3.98 2.07 45.02 0.09 4.07 16 12 C -0.12 -3.24 5.30 30.65 0.16 -3.08 16 13 C 0.09 2.49 4.63 86.33 0.40 2.89 16 14 N -0.47 -15.87 4.72 -708.90 -3.34 -19.21 16 15 C 0.47 14.96 7.17 261.49 1.88 16.83 16 16 N -0.57 -15.17 8.68 -197.99 -1.72 -16.89 16 17 C 0.16 2.81 11.30 84.71 0.96 3.76 16 18 C -0.25 -3.57 10.16 22.44 0.23 -3.35 16 19 C 0.16 3.16 11.30 84.71 0.96 4.12 16 20 N -0.57 -17.34 9.65 -197.99 -1.91 -19.25 16 21 C 0.09 3.33 5.33 86.33 0.46 3.79 16 22 C -0.10 -4.26 5.34 30.68 0.16 -4.10 16 23 C -0.13 -4.62 4.41 31.70 0.14 -4.48 16 24 C -0.11 -3.64 6.91 31.91 0.22 -3.42 16 25 C -0.11 -3.39 6.83 31.67 0.22 -3.17 16 26 C -0.13 -5.00 4.13 31.32 0.13 -4.87 16 27 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 28 H 0.33 10.36 8.10 -89.69 -0.73 9.63 16 29 H 0.03 1.31 6.10 -2.38 -0.01 1.30 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 33 H 0.09 2.47 7.69 -2.39 -0.02 2.45 16 34 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.19 1.01 8.06 -2.91 -0.02 0.98 16 36 H 0.20 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 2.94 7.55 -2.39 -0.02 2.93 16 39 H 0.07 3.75 5.22 -2.39 -0.01 3.74 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.09 7.82 -2.38 -0.02 2.07 16 42 H 0.03 1.39 7.39 -2.39 -0.02 1.37 16 43 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.04 1.70 6.08 -2.39 -0.01 1.69 16 48 H 0.06 2.31 6.87 -2.39 -0.02 2.29 16 Total: -1.00 -73.35 355.08 0.22 -73.13 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.01 Total: 26.91 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.53 Total: -4.95 kcal Atomic # 7 Polarization: -134.15 SS G_CDS: -7.97 Total: -142.11 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.64 Total: 47.03 kcal Total: -73.35 0.22 -73.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256057029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.073 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds