Wall clock time and date at job start Tue Mar 31 2020 11:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47282 * 264.77945 * 3 2 1 5 5 H 1.48506 * 109.46922 * 24.78251 * 3 2 1 6 6 H 1.48502 * 109.47186 * 144.77810 * 3 2 1 7 7 C 1.37873 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00633 * 5.71481 * 7 2 1 9 9 C 1.50704 * 119.99633 * 185.71104 * 7 2 1 10 10 H 1.08998 * 109.50559 * 335.25857 * 9 7 2 11 11 C 1.53131 * 109.53420 * 95.31743 * 9 7 2 12 12 C 1.53113 * 109.15480 * 177.57352 * 11 9 7 13 13 C 1.53035 * 109.31430 * 302.40622 * 12 11 9 14 14 N 1.46838 * 109.52568 * 59.16054 * 13 12 11 15 15 C 1.46901 * 111.00329 * 174.16437 * 14 13 12 16 16 C 1.53123 * 109.52204 * 58.63387 * 15 14 13 17 17 C 1.53041 * 109.27624 * 182.44160 * 16 15 14 18 18 N 1.46843 * 109.52175 * 59.18125 * 17 16 15 19 19 C 1.38411 * 111.00235 * 174.15697 * 18 17 16 20 20 N 1.32495 * 119.21437 * 123.93943 * 19 18 17 21 21 C 1.32283 * 120.73368 * 179.72324 * 20 19 18 22 22 C 1.38596 * 119.19940 * 0.54482 * 21 20 19 23 23 C 1.38611 * 118.55882 * 359.72997 * 22 21 20 24 24 N 1.32278 * 119.19741 * 0.02562 * 23 22 21 25 25 C 1.46852 * 111.19950 * 298.25653 * 18 17 16 26 26 C 1.53030 * 109.52286 * 61.74283 * 25 18 17 27 27 C 1.46846 * 111.19863 * 298.25856 * 14 13 12 28 28 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.49082 * 57.69331 * 11 9 7 30 30 H 1.08997 * 109.55495 * 297.49932 * 11 9 7 31 31 H 1.09000 * 109.50558 * 182.44406 * 12 11 9 32 32 H 1.09006 * 109.50635 * 62.37064 * 12 11 9 33 33 H 1.09007 * 109.46317 * 179.17876 * 13 12 11 34 34 H 1.09000 * 109.46086 * 299.14275 * 13 12 11 35 35 H 1.08994 * 109.52273 * 178.82413 * 15 14 13 36 36 H 1.09000 * 109.50123 * 302.38427 * 16 15 14 37 37 H 1.08998 * 109.50410 * 62.50669 * 16 15 14 38 38 H 1.08992 * 109.46211 * 299.16507 * 17 16 15 39 39 H 1.08996 * 109.45044 * 179.18539 * 17 16 15 40 40 H 1.07994 * 120.39763 * 180.25318 * 21 20 19 41 41 H 1.08000 * 120.72157 * 179.75255 * 22 21 20 42 42 H 1.07999 * 120.40211 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.46156 * 301.72656 * 25 18 17 44 44 H 1.08996 * 109.45199 * 181.75588 * 25 18 17 45 45 H 1.08997 * 109.50425 * 180.87746 * 26 25 18 46 46 H 1.09007 * 109.53778 * 60.78459 * 26 25 18 47 47 H 1.09001 * 109.46596 * 181.75756 * 27 14 13 48 48 H 1.09007 * 109.46235 * 301.73032 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3957 2.6820 0.5869 6 1 3.4872 1.4745 0.8075 7 6 2.0045 -1.1940 0.0005 8 1 1.4686 -2.1271 -0.0922 9 6 3.5059 -1.1972 0.1304 10 1 3.9035 -0.2448 -0.2201 11 6 3.8925 -1.4027 1.5978 12 6 5.4181 -1.4651 1.7114 13 6 5.9459 -2.5951 0.8245 14 7 5.5506 -2.3510 -0.5685 15 6 6.1562 -3.3412 -1.4689 16 6 5.7242 -4.7483 -1.0469 17 6 6.4062 -5.7784 -1.9501 18 7 7.8639 -5.6404 -1.8383 19 6 8.5123 -6.6411 -2.5410 20 7 9.3932 -6.3098 -3.4736 21 6 10.0343 -7.2417 -4.1596 22 6 9.7664 -8.5765 -3.9004 23 6 8.8350 -8.8877 -2.9221 24 7 8.2330 -7.9073 -2.2692 25 6 8.3073 -4.3129 -2.2830 26 6 7.6820 -3.2391 -1.3898 27 6 4.0891 -2.3350 -0.7107 28 1 -0.4850 0.8400 -0.0004 29 1 3.4618 -2.3361 1.9601 30 1 3.5165 -0.5713 2.1940 31 1 5.6984 -1.6547 2.7476 32 1 5.8464 -0.5170 1.3863 33 1 7.0332 -2.6323 0.8923 34 1 5.5286 -3.5447 1.1594 35 1 5.8309 -3.1506 -2.4915 36 1 6.0153 -4.9230 -0.0111 37 1 4.6423 -4.8407 -1.1420 38 1 6.1039 -5.6116 -2.9839 39 1 6.1119 -6.7819 -1.6429 40 1 10.7542 -6.9655 -4.9158 41 1 10.2725 -9.3574 -4.4486 42 1 8.6032 -9.9180 -2.6961 43 1 7.9960 -4.1530 -3.3153 44 1 9.3936 -4.2523 -2.2176 45 1 7.9989 -2.2532 -1.7297 46 1 8.0039 -3.3894 -0.3592 47 1 3.8277 -2.1833 -1.7579 48 1 3.6805 -3.2859 -0.3685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256059578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:54 Heat of formation + Delta-G solvation = 67.148917 kcal Electronic energy + Delta-G solvation = -26948.645743 eV Core-core repulsion = 23424.649232 eV Total energy + Delta-G solvation = -3523.996511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51726 -39.67153 -37.72648 -34.62684 -34.04843 -32.60374 -31.55917 -31.08086 -30.20758 -29.51475 -25.30280 -25.01036 -24.89001 -23.33626 -22.86404 -21.74424 -21.48833 -19.42150 -18.45861 -18.16559 -17.65121 -16.84866 -16.13390 -15.73436 -15.58084 -14.92842 -14.75622 -14.34950 -14.16993 -14.00014 -13.81948 -13.77372 -13.49740 -13.30688 -12.90228 -12.52681 -12.34871 -12.16208 -12.02106 -11.45553 -11.30290 -11.24403 -11.16104 -11.06493 -10.89329 -10.76832 -10.56453 -10.41996 -10.27713 -10.08064 -9.77945 -9.47228 -9.44660 -9.22180 -8.88911 -8.61565 -8.46269 -7.69724 -6.04770 -4.03738 0.66127 0.82239 2.91825 3.34446 3.41992 3.46695 3.49026 3.85958 4.29066 4.30635 4.42186 4.47120 4.75820 4.81787 4.84930 4.86340 5.03619 5.13619 5.22076 5.26474 5.41476 5.45205 5.51214 5.60671 5.62662 5.65771 5.79495 5.82078 5.89022 5.94301 6.06762 6.10742 6.18690 6.21033 6.38004 6.39079 6.47676 6.52401 6.53078 6.60579 6.74055 6.88442 6.96448 7.01397 7.36098 7.51803 7.63613 7.68827 7.88273 7.91730 8.56372 9.00252 9.59463 11.08518 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.002718 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.194465 B =10300.407890 C =10457.538276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.038 0.962 11 C -0.112 4.112 12 C -0.121 4.121 13 C 0.058 3.942 14 N -0.534 5.534 15 C 0.083 3.917 16 C -0.153 4.153 17 C 0.075 3.925 18 N -0.459 5.459 19 C 0.497 3.503 20 N -0.553 5.553 21 C 0.173 3.827 22 C -0.269 4.269 23 C 0.174 3.826 24 N -0.532 5.532 25 C 0.073 3.927 26 C -0.113 4.113 27 C 0.071 3.929 28 H 0.263 0.737 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.978 -15.199 -6.852 26.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.088 0.912 9 C 0.001 3.999 10 H 0.057 0.943 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.070 4.070 14 N -0.257 5.257 15 C -0.027 4.027 16 C -0.192 4.192 17 C -0.052 4.052 18 N -0.178 5.178 19 C 0.141 3.859 20 N -0.273 5.273 21 C 0.006 3.994 22 C -0.293 4.293 23 C 0.006 3.994 24 N -0.250 5.250 25 C -0.054 4.054 26 C -0.151 4.151 27 C -0.055 4.055 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.184 0.816 41 H 0.163 0.837 42 H 0.186 0.814 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 20.547 -13.835 -5.929 25.470 hybrid contribution 0.403 -0.656 -0.918 1.198 sum 20.950 -14.490 -6.846 26.377 Atomic orbital electron populations 1.69919 1.06374 1.26950 1.50799 1.25055 0.94656 0.99043 0.94282 0.86823 0.80189 0.83462 0.78852 1.20229 1.21894 1.18736 1.20966 0.89282 0.94467 1.50242 0.91182 1.19156 0.95739 0.94373 0.90618 0.94346 1.21856 0.92065 1.00731 1.00349 1.21686 0.98395 0.98431 0.97332 1.22078 0.99150 0.97210 0.88582 1.62258 1.11386 1.46579 1.05456 1.21781 0.94129 0.89043 0.97719 1.22381 1.00724 0.95519 1.00582 1.22144 0.82137 1.01628 0.99241 1.58387 1.07640 1.02407 1.49340 1.21160 0.90171 0.88797 0.85741 1.68436 1.12135 1.38868 1.07828 1.23073 0.93412 0.88728 0.94220 1.22709 1.03746 0.99024 1.03784 1.23112 0.88800 0.98656 0.88823 1.68056 1.28883 0.99722 1.28371 1.22063 1.00964 0.84627 0.97718 1.21780 0.94696 0.98022 1.00631 1.22266 0.83527 0.98990 1.00760 0.92730 0.93291 0.93081 0.93060 0.92121 0.91665 0.95154 0.90331 0.90377 0.90144 0.93763 0.89035 0.81611 0.83700 0.81421 0.92894 0.89458 0.89927 0.90759 0.91659 0.95542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.82 27.01 -169.99 -4.59 17.22 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.28 6.79 56.52 0.38 -5.90 16 7 C -0.51 -14.18 8.86 -34.44 -0.31 -14.48 16 8 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 9 C 0.02 0.48 1.94 -91.68 -0.18 0.30 16 10 H 0.04 0.94 5.25 -51.93 -0.27 0.66 16 11 C -0.11 -2.36 5.27 -26.60 -0.14 -2.50 16 12 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 13 C 0.06 0.91 4.63 -3.84 -0.02 0.90 16 14 N -0.53 -9.01 4.64 -226.54 -1.05 -10.06 16 15 C 0.08 1.15 2.30 -67.59 -0.16 1.00 16 16 C -0.15 -2.02 4.69 -26.65 -0.12 -2.15 16 17 C 0.07 0.92 5.33 -3.83 -0.02 0.90 16 18 N -0.46 -5.78 4.72 -175.43 -0.83 -6.61 16 19 C 0.50 6.20 7.17 -322.80 -2.32 3.89 16 20 N -0.55 -6.22 8.68 -13.93 -0.12 -6.34 16 21 C 0.17 1.37 11.30 -17.23 -0.19 1.18 16 22 C -0.27 -1.75 10.16 -39.31 -0.40 -2.15 16 23 C 0.17 1.42 11.30 -17.22 -0.19 1.22 16 24 N -0.53 -6.27 9.65 -13.93 -0.13 -6.41 16 25 C 0.07 0.85 4.63 -3.83 -0.02 0.84 16 26 C -0.11 -1.37 5.25 -26.65 -0.14 -1.51 16 27 C 0.07 1.43 4.31 -3.83 -0.02 1.41 16 28 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.93 5.99 -51.92 -0.31 0.61 16 34 H 0.03 0.49 6.56 -51.93 -0.34 0.15 16 35 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 36 H 0.08 1.09 6.39 -51.93 -0.33 0.75 16 37 H 0.08 1.13 6.80 -51.93 -0.35 0.78 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 1.14 7.55 -51.93 -0.39 0.75 16 40 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.15 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 44 H 0.09 1.00 7.69 -51.93 -0.40 0.60 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.93 6.19 -51.92 -0.32 0.61 16 47 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 48 H 0.03 0.53 6.81 -51.93 -0.35 0.18 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -31.86 361.22 -12.70 -44.56 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.72 Total: 0.48 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -4.48 Total: -11.48 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -1.36 Total: -56.23 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.59 Total: 17.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.86 -12.70 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256059578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.713 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds