Wall clock time and date at job start Tue Mar 31 2020 11:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99984 * 2 1 4 4 H 1.48498 * 109.47282 * 264.77945 * 3 2 1 5 5 H 1.48506 * 109.46922 * 24.78251 * 3 2 1 6 6 H 1.48502 * 109.47186 * 144.77810 * 3 2 1 7 7 C 1.37873 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00633 * 5.71481 * 7 2 1 9 9 C 1.50704 * 119.99633 * 185.71104 * 7 2 1 10 10 H 1.08998 * 109.50559 * 335.25857 * 9 7 2 11 11 C 1.53131 * 109.53420 * 95.31743 * 9 7 2 12 12 C 1.53113 * 109.15480 * 177.57352 * 11 9 7 13 13 C 1.53035 * 109.31430 * 302.40622 * 12 11 9 14 14 N 1.46838 * 109.52568 * 59.16054 * 13 12 11 15 15 C 1.46901 * 111.00329 * 174.16437 * 14 13 12 16 16 C 1.53123 * 109.52204 * 58.63387 * 15 14 13 17 17 C 1.53041 * 109.27624 * 182.44160 * 16 15 14 18 18 N 1.46843 * 109.52175 * 59.18125 * 17 16 15 19 19 C 1.38411 * 111.00235 * 174.15697 * 18 17 16 20 20 N 1.32495 * 119.21437 * 123.93943 * 19 18 17 21 21 C 1.32283 * 120.73368 * 179.72324 * 20 19 18 22 22 C 1.38596 * 119.19940 * 0.54482 * 21 20 19 23 23 C 1.38611 * 118.55882 * 359.72997 * 22 21 20 24 24 N 1.32278 * 119.19741 * 0.02562 * 23 22 21 25 25 C 1.46852 * 111.19950 * 298.25653 * 18 17 16 26 26 C 1.53030 * 109.52286 * 61.74283 * 25 18 17 27 27 C 1.46846 * 111.19863 * 298.25856 * 14 13 12 28 28 H 0.97000 * 120.00116 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.49082 * 57.69331 * 11 9 7 30 30 H 1.08997 * 109.55495 * 297.49932 * 11 9 7 31 31 H 1.09000 * 109.50558 * 182.44406 * 12 11 9 32 32 H 1.09006 * 109.50635 * 62.37064 * 12 11 9 33 33 H 1.09007 * 109.46317 * 179.17876 * 13 12 11 34 34 H 1.09000 * 109.46086 * 299.14275 * 13 12 11 35 35 H 1.08994 * 109.52273 * 178.82413 * 15 14 13 36 36 H 1.09000 * 109.50123 * 302.38427 * 16 15 14 37 37 H 1.08998 * 109.50410 * 62.50669 * 16 15 14 38 38 H 1.08992 * 109.46211 * 299.16507 * 17 16 15 39 39 H 1.08996 * 109.45044 * 179.18539 * 17 16 15 40 40 H 1.07994 * 120.39763 * 180.25318 * 21 20 19 41 41 H 1.08000 * 120.72157 * 179.75255 * 22 21 20 42 42 H 1.07999 * 120.40211 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.46156 * 301.72656 * 25 18 17 44 44 H 1.08996 * 109.45199 * 181.75588 * 25 18 17 45 45 H 1.08997 * 109.50425 * 180.87746 * 26 25 18 46 46 H 1.09007 * 109.53778 * 60.78459 * 26 25 18 47 47 H 1.09001 * 109.46596 * 181.75756 * 27 14 13 48 48 H 1.09007 * 109.46235 * 301.73032 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3942 5 1 1.3957 2.6820 0.5869 6 1 3.4872 1.4745 0.8075 7 6 2.0045 -1.1940 0.0005 8 1 1.4686 -2.1271 -0.0922 9 6 3.5059 -1.1972 0.1304 10 1 3.9035 -0.2448 -0.2201 11 6 3.8925 -1.4027 1.5978 12 6 5.4181 -1.4651 1.7114 13 6 5.9459 -2.5951 0.8245 14 7 5.5506 -2.3510 -0.5685 15 6 6.1562 -3.3412 -1.4689 16 6 5.7242 -4.7483 -1.0469 17 6 6.4062 -5.7784 -1.9501 18 7 7.8639 -5.6404 -1.8383 19 6 8.5123 -6.6411 -2.5410 20 7 9.3932 -6.3098 -3.4736 21 6 10.0343 -7.2417 -4.1596 22 6 9.7664 -8.5765 -3.9004 23 6 8.8350 -8.8877 -2.9221 24 7 8.2330 -7.9073 -2.2692 25 6 8.3073 -4.3129 -2.2830 26 6 7.6820 -3.2391 -1.3898 27 6 4.0891 -2.3350 -0.7107 28 1 -0.4850 0.8400 -0.0004 29 1 3.4618 -2.3361 1.9601 30 1 3.5165 -0.5713 2.1940 31 1 5.6984 -1.6547 2.7476 32 1 5.8464 -0.5170 1.3863 33 1 7.0332 -2.6323 0.8923 34 1 5.5286 -3.5447 1.1594 35 1 5.8309 -3.1506 -2.4915 36 1 6.0153 -4.9230 -0.0111 37 1 4.6423 -4.8407 -1.1420 38 1 6.1039 -5.6116 -2.9839 39 1 6.1119 -6.7819 -1.6429 40 1 10.7542 -6.9655 -4.9158 41 1 10.2725 -9.3574 -4.4486 42 1 8.6032 -9.9180 -2.6961 43 1 7.9960 -4.1530 -3.3153 44 1 9.3936 -4.2523 -2.2176 45 1 7.9989 -2.2532 -1.7297 46 1 8.0039 -3.3894 -0.3592 47 1 3.8277 -2.1833 -1.7579 48 1 3.6805 -3.2859 -0.3685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256059578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:53 Heat of formation + Delta-G solvation = 47.424809 kcal Electronic energy + Delta-G solvation = -26949.501045 eV Core-core repulsion = 23424.649232 eV Total energy + Delta-G solvation = -3524.851813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26401 -40.81920 -38.92445 -36.02284 -34.74865 -34.43336 -32.65375 -32.19752 -31.78367 -30.55770 -26.98599 -26.21676 -25.73490 -24.37166 -23.84396 -23.20218 -22.70128 -20.80726 -19.93087 -19.02101 -18.84424 -18.37777 -17.19038 -16.65220 -16.47187 -16.09997 -15.90182 -15.60938 -15.52569 -15.23325 -15.04844 -14.72055 -14.61168 -14.55378 -14.33066 -14.18732 -13.76226 -13.58494 -13.12276 -12.97111 -12.82422 -12.53459 -12.41536 -12.15939 -11.93752 -11.87625 -11.83094 -11.78206 -11.65077 -11.44618 -11.24113 -11.10250 -11.00907 -10.71551 -10.59086 -10.15019 -9.41085 -9.07380 -8.27887 -6.30789 -0.00554 0.20811 1.37391 1.37930 1.50270 2.13540 2.37377 2.80806 2.97490 3.11931 3.23068 3.58511 3.79326 3.81692 3.83364 3.98834 4.13225 4.15470 4.19312 4.28643 4.30347 4.34359 4.39699 4.44729 4.51648 4.58075 4.63942 4.71872 4.77965 4.82771 4.86541 4.88677 4.96695 4.98570 5.02829 5.11344 5.21567 5.24913 5.29269 5.32025 5.38681 5.59716 5.64732 5.68222 5.76883 5.78869 6.19663 6.28312 6.33836 6.41891 6.77534 7.17226 7.35463 8.89159 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029306 B = 0.002718 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.194465 B =10300.407890 C =10457.538276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.012 3.988 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.513 4.513 8 H 0.028 0.972 9 C 0.019 3.981 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.113 4.113 13 C 0.059 3.941 14 N -0.536 5.536 15 C 0.084 3.916 16 C -0.143 4.143 17 C 0.086 3.914 18 N -0.469 5.469 19 C 0.472 3.528 20 N -0.572 5.572 21 C 0.159 3.841 22 C -0.248 4.248 23 C 0.159 3.841 24 N -0.562 5.562 25 C 0.084 3.916 26 C -0.102 4.102 27 C 0.084 3.916 28 H 0.265 0.735 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.199 0.801 41 H 0.185 0.815 42 H 0.198 0.802 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.760 -15.868 -7.402 30.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.169 1.169 7 C -0.552 4.552 8 H 0.047 0.953 9 C -0.001 4.001 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.259 5.259 15 C -0.025 4.025 16 C -0.182 4.182 17 C -0.041 4.041 18 N -0.189 5.189 19 C 0.116 3.884 20 N -0.293 5.293 21 C -0.007 4.007 22 C -0.271 4.271 23 C -0.007 4.007 24 N -0.280 5.280 25 C -0.043 4.043 26 C -0.140 4.140 27 C -0.043 4.043 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.216 0.784 41 H 0.202 0.798 42 H 0.215 0.785 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 24.375 -14.546 -6.494 29.118 hybrid contribution -0.752 -0.663 -0.831 1.303 sum 23.623 -15.209 -7.325 29.035 Atomic orbital electron populations 1.70067 1.08252 1.27978 1.52903 1.25920 0.95400 1.02970 0.94189 0.85777 0.79326 0.78631 0.79417 1.19378 1.21679 1.16887 1.21257 0.91883 0.92840 1.49180 0.95331 1.19118 0.92723 0.95370 0.92847 0.94812 1.21730 0.95320 0.99699 0.98099 1.21634 0.94901 0.99118 0.99440 1.22135 1.00691 0.96536 0.87502 1.62197 1.08913 1.48064 1.06714 1.21821 0.95401 0.88536 0.96731 1.22239 0.99891 0.95543 1.00566 1.21946 0.82720 1.00842 0.98551 1.58393 1.07236 1.02867 1.50385 1.21185 0.91283 0.89004 0.86927 1.68418 1.12471 1.40260 1.08111 1.23750 0.93518 0.89098 0.94315 1.23132 1.02108 0.99454 1.02379 1.23756 0.88838 0.99279 0.88863 1.68034 1.30185 1.00134 1.29689 1.21936 1.00947 0.84247 0.97173 1.21689 0.92721 0.98670 1.00897 1.21905 0.85921 0.97220 0.99300 0.92641 0.94169 0.94438 0.90338 0.91992 0.88894 0.95259 0.90820 0.90718 0.91592 0.94181 0.89482 0.78424 0.79805 0.78512 0.93395 0.89099 0.89184 0.90598 0.92730 0.96416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 2 C 0.01 0.70 5.47 84.65 0.46 1.17 16 3 Si 0.94 45.37 27.01 68.60 1.85 47.23 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.25 -11.00 6.79 99.48 0.68 -10.32 16 7 C -0.51 -29.56 8.86 25.60 0.23 -29.33 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.02 0.88 1.94 -11.48 -0.02 0.85 16 10 H 0.03 1.61 5.25 -2.39 -0.01 1.60 16 11 C -0.11 -4.60 5.27 30.68 0.16 -4.44 16 12 C -0.11 -3.65 6.09 30.64 0.19 -3.47 16 13 C 0.06 1.74 4.63 86.33 0.40 2.13 16 14 N -0.54 -17.46 4.64 -870.64 -4.04 -21.50 16 15 C 0.08 2.26 2.30 45.00 0.10 2.37 16 16 C -0.14 -3.77 4.69 30.65 0.14 -3.63 16 17 C 0.09 2.12 5.33 86.33 0.46 2.58 16 18 N -0.47 -11.47 4.72 -708.95 -3.34 -14.82 16 19 C 0.47 11.34 7.17 261.48 1.88 13.22 16 20 N -0.57 -11.98 8.68 -197.99 -1.72 -13.70 16 21 C 0.16 2.08 11.30 84.71 0.96 3.03 16 22 C -0.25 -2.38 10.16 22.44 0.23 -2.15 16 23 C 0.16 2.21 11.30 84.71 0.96 3.17 16 24 N -0.56 -12.64 9.65 -197.98 -1.91 -14.55 16 25 C 0.08 1.85 4.63 86.32 0.40 2.25 16 26 C -0.10 -2.27 5.25 30.64 0.16 -2.11 16 27 C 0.08 3.41 4.31 86.33 0.37 3.78 16 28 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.01 8.14 -2.38 -0.02 2.00 16 33 H 0.09 2.31 5.99 -2.38 -0.01 2.29 16 34 H 0.03 0.89 6.56 -2.39 -0.02 0.87 16 35 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 36 H 0.07 2.03 6.39 -2.39 -0.02 2.01 16 37 H 0.07 1.91 6.80 -2.39 -0.02 1.90 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 2.20 7.55 -2.39 -0.02 2.18 16 40 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16 42 H 0.20 1.31 8.06 -2.91 -0.02 1.28 16 43 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 44 H 0.09 1.95 7.69 -2.39 -0.02 1.93 16 45 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.08 1.69 6.19 -2.38 -0.01 1.68 16 47 H 0.05 2.29 8.07 -2.39 -0.02 2.27 16 48 H 0.02 0.74 6.81 -2.38 -0.02 0.72 16 Total: -1.00 -72.00 361.22 -0.88 -72.88 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.91 Total: 15.02 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: 7.07 Total: -10.58 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -10.71 Total: -124.56 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.85 Total: 47.23 kcal Total: -72.00 -0.88 -72.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256059578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.309 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds