Wall clock time and date at job start Tue Mar 31 2020 12:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36735 * 127.13480 * 2 1 4 4 C 1.50699 * 126.34764 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.64141 * 0.41827 * 4 3 2 6 6 C 1.53029 * 109.63925 * 239.99910 * 4 3 2 7 7 C 1.50068 * 110.14753 * 190.87984 * 6 4 3 8 8 C 1.29446 * 124.07430 * 17.13192 * 7 6 4 9 9 C 1.50071 * 124.07703 * 359.54820 * 8 7 6 10 10 C 1.53013 * 110.15012 * 17.09831 * 9 8 7 11 11 N 1.30294 * 107.30568 * 179.97438 * 3 2 1 12 12 N 1.28530 * 110.05622 * 0.02562 * 11 3 2 13 13 C 1.31221 * 109.85675 * 359.97438 * 12 11 3 14 14 N 1.38582 * 126.47333 * 179.97438 * 13 12 11 15 15 C 1.46847 * 111.00291 * 235.78907 * 14 13 12 16 16 C 1.53031 * 109.52339 * 185.83989 * 15 14 13 17 17 C 1.53122 * 109.27983 * 300.82266 * 16 15 14 18 18 C 1.50702 * 109.52387 * 177.56207 * 17 16 15 19 19 H 1.07999 * 120.00057 * 240.32193 * 18 17 16 20 20 C 1.37875 * 120.00159 * 60.31354 * 18 17 16 21 21 N 1.31520 * 119.99927 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47111 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46665 * 120.00229 * 22 20 18 25 25 H 1.48495 * 109.47238 * 240.00475 * 22 20 18 26 26 C 1.53116 * 109.16041 * 57.65290 * 17 16 15 27 27 C 1.46842 * 110.99765 * 0.02562 * 14 13 12 28 28 H 1.08997 * 109.47530 * 90.00041 * 1 2 3 29 29 H 1.09003 * 109.46817 * 209.99931 * 1 2 3 30 30 H 1.08997 * 109.47115 * 329.99984 * 1 2 3 31 31 H 1.09003 * 109.35955 * 311.08505 * 6 4 3 32 32 H 1.08993 * 109.35895 * 70.81194 * 6 4 3 33 33 H 1.07996 * 117.96671 * 197.11049 * 7 6 4 34 34 H 1.07998 * 117.96146 * 179.53465 * 8 7 6 35 35 H 1.08999 * 109.35469 * 137.31429 * 9 8 7 36 36 H 1.08992 * 109.36337 * 257.04531 * 9 8 7 37 37 H 1.09004 * 109.64335 * 190.89172 * 10 9 8 38 38 H 1.09001 * 109.62196 * 70.27493 * 10 9 8 39 39 H 1.08995 * 109.46185 * 305.86124 * 15 14 13 40 40 H 1.09007 * 109.45610 * 65.82536 * 15 14 13 41 41 H 1.09008 * 109.50206 * 180.88338 * 16 15 14 42 42 H 1.08997 * 109.53582 * 60.78333 * 16 15 14 43 43 H 1.09001 * 109.52216 * 297.74789 * 17 16 15 44 44 H 0.97000 * 119.99747 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.50354 * 182.40007 * 26 17 16 46 46 H 1.09007 * 109.53386 * 62.30851 * 26 17 16 47 47 H 1.08996 * 109.46783 * 294.17290 * 27 14 13 48 48 H 1.08998 * 109.46351 * 54.14293 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.0901 0.0000 4 6 1.8620 2.5349 -0.0005 5 1 0.7737 2.5943 0.0065 6 6 2.4071 3.2325 -1.2487 7 6 2.2185 4.7170 -1.1351 8 6 1.9743 5.3341 -0.0237 9 6 1.8361 4.6502 1.3050 10 6 2.4294 3.2415 1.2370 11 7 3.5161 0.6481 0.0006 12 7 3.5212 -0.6372 0.0004 13 6 2.2888 -1.0878 0.0002 14 7 1.8978 -2.4173 -0.0005 15 6 1.0097 -2.7041 -1.1343 16 6 0.4835 -4.1367 -1.0221 17 6 1.6652 -5.1104 -1.0162 18 6 1.1566 -6.5187 -0.8457 19 1 1.4679 -7.1059 0.0055 20 6 0.2937 -7.0574 -1.7764 21 7 -0.0852 -6.3425 -2.8132 22 14 -0.3362 -8.8033 -1.5654 23 1 0.2356 -9.3896 -0.3266 24 1 -1.8179 -8.7863 -1.4663 25 1 0.0724 -9.6217 -2.7352 26 6 2.5996 -4.7597 0.1450 27 6 3.0645 -3.3089 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.4692 3.0102 -1.3521 32 1 1.8746 2.8689 -2.1275 33 1 2.2913 5.3072 -2.0366 34 1 1.8633 6.4079 -0.0545 35 1 2.3624 5.2278 2.0650 36 1 0.7807 4.5829 1.5687 37 1 2.1566 2.6853 2.1339 38 1 3.5147 3.3048 1.1575 39 1 0.1715 -2.0074 -1.1243 40 1 1.5635 -2.5925 -2.0665 41 1 -0.1633 -4.3544 -1.8721 42 1 -0.0824 -4.2457 -0.0969 43 1 2.2083 -5.0298 -1.9579 44 1 -0.6920 -6.7216 -3.4681 45 1 3.4648 -5.4225 0.1289 46 1 2.0680 -4.8782 1.0892 47 1 3.6090 -3.1947 -0.9378 48 1 3.7183 -3.0515 0.8328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262861971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:43 Heat of formation + Delta-G solvation = 86.239527 kcal Electronic energy + Delta-G solvation = -26889.304299 eV Core-core repulsion = 23366.135619 eV Total energy + Delta-G solvation = -3523.168680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82466 -38.88553 -38.27058 -34.94897 -34.13182 -32.38600 -31.21728 -31.03046 -30.11799 -28.19774 -27.57133 -25.68879 -24.03712 -23.21385 -22.61951 -22.17921 -20.81429 -20.21324 -18.78271 -17.94268 -17.25236 -16.48274 -16.26416 -16.16729 -15.80867 -14.96122 -14.57965 -14.26968 -14.12805 -13.94373 -13.63747 -13.30052 -13.19199 -12.93148 -12.84934 -12.67891 -12.59406 -12.51955 -12.32224 -11.61910 -11.38198 -11.17783 -11.13514 -11.03127 -10.93924 -10.60909 -10.55093 -10.36249 -10.31140 -10.13031 -10.00512 -9.71063 -9.38359 -9.25073 -9.07635 -8.82664 -8.38964 -7.82536 -6.05682 -4.10661 1.92985 2.04605 2.39160 3.05931 3.26100 3.34751 3.38917 4.01273 4.16403 4.39641 4.44747 4.49413 4.62030 4.72209 4.96914 5.01388 5.04851 5.11336 5.22403 5.24010 5.27133 5.30954 5.38950 5.45124 5.59034 5.68241 5.72193 5.77549 5.85297 5.90113 5.91532 5.97577 6.12382 6.15087 6.23138 6.27429 6.37262 6.52533 6.66173 6.71520 6.72078 6.89586 7.01257 7.26638 7.28506 7.56233 7.67191 7.90724 8.00913 8.37968 8.93159 9.02020 9.54499 11.00978 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.033590 B = 0.002643 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.376633 B =10593.252249 C =10919.124634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.486 5.486 3 C 0.162 3.838 4 C 0.011 3.989 5 H 0.084 0.916 6 C -0.082 4.082 7 C -0.148 4.148 8 C -0.161 4.161 9 C -0.090 4.090 10 C -0.107 4.107 11 N -0.278 5.278 12 N -0.333 5.333 13 C 0.377 3.623 14 N -0.449 5.449 15 C 0.054 3.946 16 C -0.104 4.104 17 C 0.045 3.955 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.109 4.109 27 C 0.077 3.923 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.101 0.899 42 H 0.048 0.952 43 H 0.025 0.975 44 H 0.259 0.741 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.045 0.955 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.903 21.216 5.011 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.182 5.182 3 C -0.106 4.106 4 C -0.010 4.010 5 H 0.103 0.897 6 C -0.120 4.120 7 C -0.167 4.167 8 C -0.179 4.179 9 C -0.127 4.127 10 C -0.146 4.146 11 N -0.117 5.117 12 N -0.178 5.178 13 C 0.021 3.979 14 N -0.173 5.173 15 C -0.072 4.072 16 C -0.142 4.142 17 C 0.026 3.974 18 C -0.547 4.547 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.147 4.147 27 C -0.049 4.049 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.119 0.881 42 H 0.066 0.934 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.209 21.035 5.269 21.686 hybrid contribution -1.626 -0.821 -0.642 1.931 sum -1.417 20.214 4.627 20.785 Atomic orbital electron populations 1.22118 0.75821 1.05081 1.03819 1.45986 1.08414 1.05820 1.57970 1.24424 0.87207 0.90857 1.08106 1.19507 1.00116 0.84247 0.97150 0.89739 1.20478 1.02831 0.92079 0.96586 1.22032 1.00742 0.95812 0.98075 1.22045 1.01766 0.99554 0.94493 1.20470 1.01224 0.95324 0.95684 1.21611 1.01764 0.94738 0.96459 1.73840 1.17198 1.03275 1.17352 1.74662 1.15499 1.02749 1.24878 1.23067 0.86377 0.88028 1.00455 1.58803 1.19712 0.95766 1.42996 1.22614 0.94193 1.01543 0.88855 1.21749 1.00947 0.88553 1.02953 1.18736 0.91536 0.94195 0.92898 1.21214 1.27066 0.97989 1.08409 0.92464 1.24975 0.96331 0.97615 0.95129 1.69864 1.34717 1.36484 1.12183 0.86551 0.78539 0.84917 0.78090 1.19768 1.21094 1.21082 1.21778 1.00119 0.91378 1.01421 1.22131 0.88680 0.92652 1.01445 0.90290 0.88390 0.89522 0.89246 0.90945 0.87650 0.87916 0.90633 0.90902 0.91492 0.90292 0.92080 0.94271 0.88098 0.93355 0.95660 0.93067 0.91997 0.92217 0.93616 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.15 59.85 0.55 1.32 16 2 N -0.49 -7.04 3.21 -121.46 -0.39 -7.43 16 3 C 0.16 2.30 6.58 -154.02 -1.01 1.28 16 4 C 0.01 0.11 2.61 -91.56 -0.24 -0.13 16 5 H 0.08 0.71 6.94 -51.93 -0.36 0.35 16 6 C -0.08 -0.79 5.42 -28.17 -0.15 -0.94 16 7 C -0.15 -1.19 9.80 -35.90 -0.35 -1.55 16 8 C -0.16 -1.18 9.80 -35.90 -0.35 -1.53 16 9 C -0.09 -0.64 6.12 -28.18 -0.17 -0.81 16 10 C -0.11 -0.99 5.29 -26.52 -0.14 -1.13 16 11 N -0.28 -4.88 12.12 32.99 0.40 -4.48 16 12 N -0.33 -6.45 11.24 30.32 0.34 -6.11 16 13 C 0.38 6.73 7.22 -318.87 -2.30 4.43 16 14 N -0.45 -8.26 4.70 -174.56 -0.82 -9.08 16 15 C 0.05 1.00 5.28 -3.84 -0.02 0.98 16 16 C -0.10 -2.27 5.12 -26.65 -0.14 -2.41 16 17 C 0.04 1.07 2.16 -91.65 -0.20 0.87 16 18 C -0.51 -13.42 8.56 -34.44 -0.29 -13.72 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.61 5.31 -17.82 -0.09 1.51 16 21 N -0.89 -24.47 11.37 55.43 0.63 -23.84 16 22 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 27 C 0.08 1.47 4.88 -3.84 -0.02 1.45 16 28 H 0.08 0.73 7.75 -51.93 -0.40 0.32 16 29 H 0.10 1.06 7.64 -51.93 -0.40 0.66 16 30 H 0.09 0.64 7.23 -51.93 -0.38 0.26 16 31 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.06 0.97 5.20 -51.93 -0.27 0.70 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 2.46 6.18 -51.92 -0.32 2.14 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.07 1.38 7.92 -51.93 -0.41 0.97 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -30.04 370.74 -12.34 -42.38 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.99 Total: 0.03 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -5.08 Total: -12.75 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.16 Total: -50.94 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.04 -12.34 -42.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262861971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.624 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds