Wall clock time and date at job start Tue Mar 31 2020 12:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36735 * 127.13480 * 2 1 4 4 C 1.50699 * 126.34764 * 359.97438 * 3 2 1 5 5 H 1.08997 * 109.64141 * 0.41827 * 4 3 2 6 6 C 1.53029 * 109.63925 * 239.99910 * 4 3 2 7 7 C 1.50068 * 110.14753 * 190.87984 * 6 4 3 8 8 C 1.29446 * 124.07430 * 17.13192 * 7 6 4 9 9 C 1.50071 * 124.07703 * 359.54820 * 8 7 6 10 10 C 1.53013 * 110.15012 * 17.09831 * 9 8 7 11 11 N 1.30294 * 107.30568 * 179.97438 * 3 2 1 12 12 N 1.28530 * 110.05622 * 0.02562 * 11 3 2 13 13 C 1.31221 * 109.85675 * 359.97438 * 12 11 3 14 14 N 1.38582 * 126.47333 * 179.97438 * 13 12 11 15 15 C 1.46847 * 111.00291 * 235.78907 * 14 13 12 16 16 C 1.53031 * 109.52339 * 185.83989 * 15 14 13 17 17 C 1.53122 * 109.27983 * 300.82266 * 16 15 14 18 18 C 1.50702 * 109.52387 * 177.56207 * 17 16 15 19 19 H 1.07999 * 120.00057 * 240.32193 * 18 17 16 20 20 C 1.37875 * 120.00159 * 60.31354 * 18 17 16 21 21 N 1.31520 * 119.99927 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00146 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47111 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46665 * 120.00229 * 22 20 18 25 25 H 1.48495 * 109.47238 * 240.00475 * 22 20 18 26 26 C 1.53116 * 109.16041 * 57.65290 * 17 16 15 27 27 C 1.46842 * 110.99765 * 0.02562 * 14 13 12 28 28 H 1.08997 * 109.47530 * 90.00041 * 1 2 3 29 29 H 1.09003 * 109.46817 * 209.99931 * 1 2 3 30 30 H 1.08997 * 109.47115 * 329.99984 * 1 2 3 31 31 H 1.09003 * 109.35955 * 311.08505 * 6 4 3 32 32 H 1.08993 * 109.35895 * 70.81194 * 6 4 3 33 33 H 1.07996 * 117.96671 * 197.11049 * 7 6 4 34 34 H 1.07998 * 117.96146 * 179.53465 * 8 7 6 35 35 H 1.08999 * 109.35469 * 137.31429 * 9 8 7 36 36 H 1.08992 * 109.36337 * 257.04531 * 9 8 7 37 37 H 1.09004 * 109.64335 * 190.89172 * 10 9 8 38 38 H 1.09001 * 109.62196 * 70.27493 * 10 9 8 39 39 H 1.08995 * 109.46185 * 305.86124 * 15 14 13 40 40 H 1.09007 * 109.45610 * 65.82536 * 15 14 13 41 41 H 1.09008 * 109.50206 * 180.88338 * 16 15 14 42 42 H 1.08997 * 109.53582 * 60.78333 * 16 15 14 43 43 H 1.09001 * 109.52216 * 297.74789 * 17 16 15 44 44 H 0.97000 * 119.99747 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.50354 * 182.40007 * 26 17 16 46 46 H 1.09007 * 109.53386 * 62.30851 * 26 17 16 47 47 H 1.08996 * 109.46783 * 294.17290 * 27 14 13 48 48 H 1.08998 * 109.46351 * 54.14293 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2904 1.0901 0.0000 4 6 1.8620 2.5349 -0.0005 5 1 0.7737 2.5943 0.0065 6 6 2.4071 3.2325 -1.2487 7 6 2.2185 4.7170 -1.1351 8 6 1.9743 5.3341 -0.0237 9 6 1.8361 4.6502 1.3050 10 6 2.4294 3.2415 1.2370 11 7 3.5161 0.6481 0.0006 12 7 3.5212 -0.6372 0.0004 13 6 2.2888 -1.0878 0.0002 14 7 1.8978 -2.4173 -0.0005 15 6 1.0097 -2.7041 -1.1343 16 6 0.4835 -4.1367 -1.0221 17 6 1.6652 -5.1104 -1.0162 18 6 1.1566 -6.5187 -0.8457 19 1 1.4679 -7.1059 0.0055 20 6 0.2937 -7.0574 -1.7764 21 7 -0.0852 -6.3425 -2.8132 22 14 -0.3362 -8.8033 -1.5654 23 1 0.2356 -9.3896 -0.3266 24 1 -1.8179 -8.7863 -1.4663 25 1 0.0724 -9.6217 -2.7352 26 6 2.5996 -4.7597 0.1450 27 6 3.0645 -3.3089 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.4692 3.0102 -1.3521 32 1 1.8746 2.8689 -2.1275 33 1 2.2913 5.3072 -2.0366 34 1 1.8633 6.4079 -0.0545 35 1 2.3624 5.2278 2.0650 36 1 0.7807 4.5829 1.5687 37 1 2.1566 2.6853 2.1339 38 1 3.5147 3.3048 1.1575 39 1 0.1715 -2.0074 -1.1243 40 1 1.5635 -2.5925 -2.0665 41 1 -0.1633 -4.3544 -1.8721 42 1 -0.0824 -4.2457 -0.0969 43 1 2.2083 -5.0298 -1.9579 44 1 -0.6920 -6.7216 -3.4681 45 1 3.4648 -5.4225 0.1289 46 1 2.0680 -4.8782 1.0892 47 1 3.6090 -3.1947 -0.9378 48 1 3.7183 -3.0515 0.8328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262861971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:42 Heat of formation + Delta-G solvation = 72.732789 kcal Electronic energy + Delta-G solvation = -26889.889996 eV Core-core repulsion = 23366.135619 eV Total energy + Delta-G solvation = -3523.754377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07103 -40.11944 -39.32957 -36.21799 -35.75908 -33.68897 -32.63091 -31.75361 -31.69387 -29.51519 -28.57852 -27.47006 -25.03505 -24.36692 -23.94444 -23.58526 -22.18166 -21.31950 -20.46657 -18.66729 -18.56360 -18.27269 -17.39041 -17.15248 -17.03794 -16.50413 -15.97156 -15.60904 -15.28445 -14.84346 -14.73393 -14.51608 -14.40620 -14.24753 -14.14668 -13.96424 -13.71186 -13.35069 -13.20709 -13.17731 -12.92227 -12.82133 -12.61944 -12.35960 -12.15820 -12.03549 -11.94045 -11.79915 -11.58153 -11.37869 -11.26272 -11.18296 -10.92298 -10.77213 -10.66655 -10.41232 -9.83709 -9.23423 -8.09280 -6.21381 0.72505 1.24696 1.41408 1.44599 1.45620 1.55071 1.77237 2.44500 2.66255 3.18825 3.23761 3.60680 3.71375 3.79224 3.88140 4.02119 4.03891 4.14784 4.24521 4.27655 4.29759 4.38941 4.39898 4.43201 4.51248 4.56089 4.60239 4.66758 4.68907 4.78340 4.88138 4.93311 4.96709 5.00016 5.03817 5.09524 5.16218 5.20914 5.26387 5.39436 5.45171 5.55713 5.65296 5.71553 5.80082 5.96934 6.09174 6.10408 6.21999 6.37527 6.88611 7.46650 7.73993 8.96154 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.033590 B = 0.002643 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.376633 B =10593.252249 C =10919.124634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.482 5.482 3 C 0.185 3.815 4 C 0.011 3.989 5 H 0.112 0.888 6 C -0.079 4.079 7 C -0.162 4.162 8 C -0.154 4.154 9 C -0.087 4.087 10 C -0.105 4.105 11 N -0.316 5.316 12 N -0.364 5.364 13 C 0.358 3.642 14 N -0.446 5.446 15 C 0.067 3.933 16 C -0.091 4.091 17 C 0.041 3.959 18 C -0.528 4.528 19 H 0.054 0.946 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.952 3.048 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.284 1.284 26 C -0.098 4.098 27 C 0.088 3.912 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.021 0.979 41 H 0.076 0.924 42 H 0.046 0.954 43 H -0.009 1.009 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.031 0.969 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 23.254 6.085 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.176 5.176 3 C -0.084 4.084 4 C -0.009 4.009 5 H 0.130 0.870 6 C -0.117 4.117 7 C -0.180 4.180 8 C -0.172 4.172 9 C -0.124 4.124 10 C -0.143 4.143 11 N -0.154 5.154 12 N -0.209 5.209 13 C 0.000 4.000 14 N -0.170 5.170 15 C -0.059 4.059 16 C -0.130 4.130 17 C 0.022 3.978 18 C -0.566 4.566 19 H 0.072 0.928 20 C -0.184 4.184 21 N -0.557 5.557 22 Si 0.778 3.222 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.210 1.210 26 C -0.136 4.136 27 C -0.039 4.039 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.142 0.858 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.039 0.961 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.009 0.991 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.049 0.951 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.558 23.091 6.353 23.999 hybrid contribution -1.060 -1.357 -0.979 1.981 sum -2.618 21.733 5.373 22.540 Atomic orbital electron populations 1.22512 0.73151 1.06859 1.05367 1.46244 1.09924 1.04687 1.56779 1.25233 0.86335 0.92294 1.04567 1.19794 1.01730 0.81526 0.97889 0.86966 1.20399 1.01367 0.93542 0.96362 1.22004 1.02199 0.94662 0.99090 1.22264 1.00242 1.00509 0.94146 1.20500 1.02268 0.93628 0.95970 1.21576 1.00738 0.96262 0.95756 1.73781 1.19288 1.02621 1.19732 1.74551 1.16900 1.03931 1.25557 1.22932 0.86939 0.88200 1.01922 1.58756 1.19219 0.96337 1.42663 1.22402 0.95007 1.00145 0.88340 1.21462 0.99688 0.90226 1.01597 1.18708 0.92526 0.94036 0.92491 1.21531 1.27351 0.99303 1.08440 0.92820 1.25689 0.96580 1.01184 0.94913 1.69987 1.35066 1.37893 1.12704 0.85593 0.78083 0.80530 0.77962 1.19327 1.20471 1.21025 1.21618 0.99517 0.92505 0.99940 1.21935 0.89032 0.91941 1.00973 0.88796 0.88718 0.85801 0.91611 0.90872 0.86590 0.86105 0.89437 0.89080 0.91694 0.92219 0.88926 0.96077 0.90603 0.93507 0.99100 0.93000 0.91673 0.91984 0.95057 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.08 9.15 127.77 1.17 2.25 16 2 N -0.48 -13.15 3.21 -538.19 -1.73 -14.88 16 3 C 0.18 5.01 6.58 137.64 0.91 5.91 16 4 C 0.01 0.20 2.61 -11.40 -0.03 0.17 16 5 H 0.11 1.42 6.94 -2.39 -0.02 1.41 16 6 C -0.08 -1.41 5.42 29.66 0.16 -1.24 16 7 C -0.16 -2.21 9.80 27.03 0.27 -1.95 16 8 C -0.15 -1.76 9.80 27.04 0.27 -1.49 16 9 C -0.09 -0.93 6.12 29.66 0.18 -0.75 16 10 C -0.10 -1.72 5.29 30.73 0.16 -1.55 16 11 N -0.32 -11.16 12.12 -49.54 -0.60 -11.76 16 12 N -0.36 -14.33 11.24 -58.00 -0.65 -14.98 16 13 C 0.36 12.66 7.22 260.11 1.88 14.54 16 14 N -0.45 -16.37 4.70 -706.18 -3.32 -19.69 16 15 C 0.07 2.50 5.28 86.32 0.46 2.96 16 16 C -0.09 -4.07 5.12 30.65 0.16 -3.91 16 17 C 0.04 2.01 2.16 -11.46 -0.02 1.98 16 18 C -0.53 -28.37 8.56 25.60 0.22 -28.15 16 19 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 20 C 0.01 0.80 5.31 84.65 0.45 1.25 16 21 N -0.92 -51.11 11.37 21.45 0.24 -50.87 16 22 Si 0.95 42.66 29.54 68.60 2.03 44.69 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 26 C -0.10 -4.07 5.32 30.64 0.16 -3.91 16 27 C 0.09 3.41 4.88 86.33 0.42 3.83 16 28 H 0.09 1.40 7.75 -2.39 -0.02 1.39 16 29 H 0.09 1.78 7.64 -2.39 -0.02 1.76 16 30 H 0.12 1.25 7.23 -2.39 -0.02 1.23 16 31 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.12 1.00 8.06 -2.91 -0.02 0.97 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 39 H 0.09 2.83 5.20 -2.39 -0.01 2.82 16 40 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.08 3.79 6.18 -2.38 -0.01 3.77 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 44 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 47 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 3.07 7.92 -2.39 -0.02 3.05 16 Total: -1.00 -66.94 370.74 3.70 -63.24 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.93 Total: 14.32 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.80 Total: -10.06 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -6.05 Total: -112.18 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -66.94 3.70 -63.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262861971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.971 kcal (2) G-P(sol) polarization free energy of solvation -66.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds