Wall clock time and date at job start Tue Mar 31 2020 11:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00024 * 2 1 4 4 N 1.46501 * 109.46885 * 124.99948 * 3 2 1 5 5 C 1.36735 * 127.13984 * 270.66735 * 4 3 2 6 6 C 1.50701 * 126.34376 * 0.05851 * 5 4 3 7 7 H 1.08999 * 109.47624 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47188 * 239.99652 * 6 5 4 9 9 C 1.53006 * 109.46773 * 120.00024 * 6 5 4 10 10 C 1.50709 * 109.46862 * 184.99911 * 9 6 5 11 11 H 1.08003 * 119.99760 * 0.02562 * 10 9 6 12 12 C 1.37876 * 119.99784 * 179.97438 * 10 9 6 13 13 N 1.31509 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99917 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46933 * 120.00107 * 14 12 10 17 17 H 1.48492 * 109.47207 * 240.00510 * 14 12 10 18 18 N 1.30288 * 107.30935 * 180.02562 * 5 4 3 19 19 N 1.28537 * 110.05033 * 359.72907 * 18 5 4 20 20 C 1.31215 * 109.85760 * 0.45279 * 19 18 5 21 21 N 1.38580 * 126.46721 * 179.82506 * 20 19 18 22 22 C 1.47170 * 110.99929 * 296.68563 * 21 20 19 23 23 C 1.52990 * 108.59187 * 199.59361 * 22 21 20 24 24 C 1.52976 * 109.63363 * 305.87838 * 23 22 21 25 25 H 1.09000 * 115.39467 * 232.08721 * 24 23 22 26 26 C 1.53602 * 115.98649 * 89.09293 * 24 23 22 27 27 C 1.52359 * 59.74965 * 249.57011 * 26 24 23 28 28 H 1.09004 * 116.26166 * 253.29081 * 27 26 24 29 29 C 1.46737 * 111.00346 * 59.79051 * 21 20 19 30 30 H 1.08000 * 120.00232 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00097 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00205 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47018 * 4.99796 * 3 2 1 34 34 H 1.09004 * 109.47298 * 245.00070 * 3 2 1 35 35 H 1.08993 * 109.47664 * 300.00302 * 8 6 5 36 36 H 1.09007 * 109.47169 * 60.00508 * 8 6 5 37 37 H 1.09005 * 109.47141 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47036 * 304.99347 * 9 6 5 39 39 H 1.08992 * 109.47020 * 65.00183 * 9 6 5 40 40 H 0.96999 * 120.00125 * 180.02562 * 13 12 10 41 41 H 1.09000 * 109.61784 * 319.33027 * 22 21 20 42 42 H 1.09003 * 109.61278 * 79.68168 * 22 21 20 43 43 H 1.08992 * 109.44390 * 185.82496 * 23 22 21 44 44 H 1.08997 * 109.43968 * 65.92468 * 23 22 21 45 45 H 1.09007 * 117.52563 * 356.98691 * 26 24 23 46 46 H 1.08996 * 117.52801 * 142.09204 * 26 24 23 47 47 H 1.09001 * 109.29711 * 59.86009 * 29 21 20 48 48 H 1.09001 * 109.30117 * 300.47731 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7409 1.7818 2.3977 6 6 1.4384 2.3492 2.9004 7 1 0.7070 2.3514 2.0922 8 6 1.6612 3.7816 3.3897 9 6 0.9202 1.4904 4.0558 10 6 -0.4400 1.9837 4.4776 11 1 -0.8899 2.8253 3.9718 12 6 -1.1104 1.3600 5.5084 13 7 -0.5627 0.3349 6.1238 14 14 -2.7959 1.9719 6.0317 15 1 -3.1861 3.1298 5.1877 16 1 -3.7912 0.8821 5.8670 17 1 -2.7506 2.3898 7.4558 18 7 3.8344 1.6283 3.0892 19 7 4.7523 1.1107 2.3532 20 6 4.2925 0.9135 1.1401 21 7 4.9921 0.3762 0.0713 22 6 6.1277 1.2352 -0.3010 23 6 6.5526 0.8899 -1.7295 24 6 6.8285 -0.6111 -1.8352 25 1 7.7951 -0.8799 -2.2612 26 6 5.6247 -1.4926 -2.2003 27 6 6.2282 -1.5581 -0.8029 28 1 6.8108 -2.4496 -0.5704 29 6 5.4581 -0.9812 0.3769 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4027 -0.9314 35 1 2.3927 3.7799 4.1977 36 1 2.0304 4.3935 2.5666 37 1 0.7190 4.1922 3.7529 38 1 0.8457 0.4523 3.7319 39 1 1.6090 1.5599 4.8975 40 1 -1.0345 -0.1041 6.8487 41 1 5.8267 2.2816 -0.2515 42 1 6.9582 1.0606 0.3831 43 1 7.4565 1.4436 -1.9831 44 1 5.7551 1.1617 -2.4210 45 1 4.6566 -1.0035 -2.3085 46 1 5.8021 -2.3367 -2.8666 47 1 4.5993 -1.6170 0.5922 48 1 6.1082 -0.9507 1.2513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262944663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:33 Heat of formation + Delta-G solvation = 123.237016 kcal Electronic energy + Delta-G solvation = -27279.050189 eV Core-core repulsion = 23757.485840 eV Total energy + Delta-G solvation = -3521.564349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.62486 -39.79902 -36.05703 -35.79286 -34.77484 -32.52407 -32.14957 -31.52407 -28.78855 -26.99570 -26.72889 -25.94693 -24.06996 -23.92877 -22.00612 -21.62922 -21.12594 -19.98248 -19.25171 -18.41681 -17.45559 -16.72440 -16.18858 -16.05373 -15.22281 -15.09502 -14.73012 -14.49851 -14.27942 -14.13964 -13.75511 -13.47411 -13.22242 -12.85581 -12.43936 -12.36329 -12.32732 -12.12357 -11.76996 -11.56464 -11.47490 -11.27984 -11.07676 -10.93363 -10.88456 -10.79708 -10.49236 -10.42851 -10.14041 -9.97713 -9.92654 -9.76946 -9.62486 -9.46041 -9.09646 -8.74818 -8.41665 -8.35245 -5.99833 -4.03283 1.94625 2.17025 2.71199 3.30119 3.30642 3.38317 3.40791 3.48151 3.78167 4.36230 4.43998 4.59007 4.67245 4.74316 4.83156 4.88394 4.96232 5.05497 5.13032 5.16744 5.20824 5.35782 5.41802 5.46383 5.51161 5.56239 5.61513 5.65992 5.71903 5.76432 5.86585 5.89226 5.98331 6.04808 6.07835 6.10659 6.25682 6.34898 6.56439 6.64089 6.66273 6.69858 6.83644 6.93697 7.05811 7.48805 7.64542 7.79844 7.99671 8.35591 9.02371 9.20308 9.60151 11.11281 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.003322 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.809099 B = 8426.697081 C = 8763.270264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.183 4.183 3 C 0.146 3.854 4 N -0.464 5.464 5 C 0.222 3.778 6 C -0.002 4.002 7 H 0.071 0.929 8 C -0.126 4.126 9 C 0.040 3.960 10 C -0.518 4.518 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.890 3.110 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 N -0.288 5.288 19 N -0.312 5.312 20 C 0.317 3.683 21 N -0.455 5.455 22 C 0.065 3.935 23 C -0.082 4.082 24 C -0.148 4.148 25 H 0.103 0.897 26 C -0.167 4.167 27 C -0.143 4.143 28 H 0.108 0.892 29 C 0.096 3.904 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.014 0.986 39 H 0.031 0.969 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 -0.765 -19.793 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.202 4.202 3 C 0.023 3.977 4 N -0.156 5.156 5 C -0.045 4.045 6 C -0.023 4.023 7 H 0.089 0.911 8 C -0.185 4.185 9 C 0.002 3.998 10 C -0.557 4.557 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.718 3.282 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 N -0.127 5.127 19 N -0.156 5.156 20 C -0.039 4.039 21 N -0.181 5.181 22 C -0.062 4.062 23 C -0.120 4.120 24 C -0.167 4.167 25 H 0.121 0.879 26 C -0.204 4.204 27 C -0.162 4.162 28 H 0.126 0.874 29 C -0.031 4.031 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.141 -0.887 -18.908 21.964 hybrid contribution -1.313 -0.070 -0.144 1.322 sum 9.828 -0.956 -19.052 21.459 Atomic orbital electron populations 1.23951 0.95485 1.02713 0.96552 1.22934 0.96182 0.97742 1.03309 1.20834 0.91601 0.97390 0.87879 1.46411 1.10228 1.47475 1.11493 1.25664 0.99590 0.99213 0.80021 1.19997 0.85597 0.96541 1.00139 0.91062 1.21687 1.02915 0.93820 1.00039 1.19083 0.95966 0.93607 0.91097 1.21164 1.01920 1.15410 1.17165 0.92334 1.24994 0.97859 0.94986 0.96395 1.69991 1.38007 1.21519 1.23358 0.86568 0.84334 0.78706 0.78577 1.19702 1.21123 1.20993 1.74066 0.97350 1.16751 1.24491 1.74536 1.24428 1.16818 0.99797 1.22107 0.84777 1.04606 0.92412 1.58783 1.24931 1.03022 1.31351 1.22185 0.91274 0.96212 0.96519 1.21143 1.01305 0.93564 0.95988 1.22262 0.97586 0.92946 1.03883 0.87935 1.23073 0.98023 1.02121 0.97172 1.21956 1.02846 1.00773 0.90603 0.87398 1.21423 0.98865 0.86920 0.95938 0.87739 0.87901 0.87056 0.88622 0.88047 0.92028 0.95028 0.90638 0.96782 0.95073 0.93007 0.90740 0.92551 0.90735 0.90851 0.88073 0.89233 0.90177 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 14.32 29.01 0.42 -1.42 16 2 C -0.18 -2.37 9.85 -36.02 -0.35 -2.72 16 3 C 0.15 1.87 6.31 -5.19 -0.03 1.84 16 4 N -0.46 -7.76 2.79 -115.37 -0.32 -8.08 16 5 C 0.22 4.47 6.58 -154.02 -1.01 3.46 16 6 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 7 H 0.07 1.35 6.96 -51.93 -0.36 0.99 16 8 C -0.13 -2.40 8.98 37.16 0.33 -2.06 16 9 C 0.04 1.04 4.43 -27.88 -0.12 0.92 16 10 C -0.52 -14.00 8.41 -34.44 -0.29 -14.29 16 11 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 14 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 N -0.29 -6.40 12.18 32.99 0.40 -6.00 16 19 N -0.31 -6.30 12.12 30.31 0.37 -5.93 16 20 C 0.32 5.31 6.35 -318.88 -2.02 3.29 16 21 N -0.46 -5.88 4.47 -174.89 -0.78 -6.66 16 22 C 0.07 0.73 5.50 -3.68 -0.02 0.71 16 23 C -0.08 -0.69 6.09 -26.75 -0.16 -0.85 16 24 C -0.15 -1.22 6.27 -90.62 -0.57 -1.79 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 C -0.17 -1.39 9.78 -26.75 -0.26 -1.65 16 27 C -0.14 -1.33 6.08 -91.64 -0.56 -1.89 16 28 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 29 C 0.10 1.17 5.31 -4.30 -0.02 1.15 16 30 H 0.10 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.10 1.18 7.84 -52.49 -0.41 0.77 16 32 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.10 1.13 6.91 -51.93 -0.36 0.77 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 42 H 0.06 0.68 7.97 -51.93 -0.41 0.26 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.80 8.06 -51.93 -0.42 0.39 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -32.13 389.83 -11.93 -44.06 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -8.16 Total: 0.57 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -5.03 Total: -14.02 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.40 Total: -52.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.13 -11.93 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262944663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.295 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds