Wall clock time and date at job start Tue Mar 31 2020 11:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 120.00024 * 2 1 4 4 N 1.46501 * 109.46885 * 124.99948 * 3 2 1 5 5 C 1.36735 * 127.13984 * 270.66735 * 4 3 2 6 6 C 1.50701 * 126.34376 * 0.05851 * 5 4 3 7 7 H 1.08999 * 109.47624 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47188 * 239.99652 * 6 5 4 9 9 C 1.53006 * 109.46773 * 120.00024 * 6 5 4 10 10 C 1.50709 * 109.46862 * 184.99911 * 9 6 5 11 11 H 1.08003 * 119.99760 * 0.02562 * 10 9 6 12 12 C 1.37876 * 119.99784 * 179.97438 * 10 9 6 13 13 N 1.31509 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99917 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47021 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46933 * 120.00107 * 14 12 10 17 17 H 1.48492 * 109.47207 * 240.00510 * 14 12 10 18 18 N 1.30288 * 107.30935 * 180.02562 * 5 4 3 19 19 N 1.28537 * 110.05033 * 359.72907 * 18 5 4 20 20 C 1.31215 * 109.85760 * 0.45279 * 19 18 5 21 21 N 1.38580 * 126.46721 * 179.82506 * 20 19 18 22 22 C 1.47170 * 110.99929 * 296.68563 * 21 20 19 23 23 C 1.52990 * 108.59187 * 199.59361 * 22 21 20 24 24 C 1.52976 * 109.63363 * 305.87838 * 23 22 21 25 25 H 1.09000 * 115.39467 * 232.08721 * 24 23 22 26 26 C 1.53602 * 115.98649 * 89.09293 * 24 23 22 27 27 C 1.52359 * 59.74965 * 249.57011 * 26 24 23 28 28 H 1.09004 * 116.26166 * 253.29081 * 27 26 24 29 29 C 1.46737 * 111.00346 * 59.79051 * 21 20 19 30 30 H 1.08000 * 120.00232 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00097 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.00205 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47018 * 4.99796 * 3 2 1 34 34 H 1.09004 * 109.47298 * 245.00070 * 3 2 1 35 35 H 1.08993 * 109.47664 * 300.00302 * 8 6 5 36 36 H 1.09007 * 109.47169 * 60.00508 * 8 6 5 37 37 H 1.09005 * 109.47141 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.47036 * 304.99347 * 9 6 5 39 39 H 1.08992 * 109.47020 * 65.00183 * 9 6 5 40 40 H 0.96999 * 120.00125 * 180.02562 * 13 12 10 41 41 H 1.09000 * 109.61784 * 319.33027 * 22 21 20 42 42 H 1.09003 * 109.61278 * 79.68168 * 22 21 20 43 43 H 1.08992 * 109.44390 * 185.82496 * 23 22 21 44 44 H 1.08997 * 109.43968 * 65.92468 * 23 22 21 45 45 H 1.09007 * 117.52563 * 356.98691 * 26 24 23 46 46 H 1.08996 * 117.52801 * 142.09204 * 26 24 23 47 47 H 1.09001 * 109.29711 * 59.86009 * 29 21 20 48 48 H 1.09001 * 109.30117 * 300.47731 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7409 1.7818 2.3977 6 6 1.4384 2.3492 2.9004 7 1 0.7070 2.3514 2.0922 8 6 1.6612 3.7816 3.3897 9 6 0.9202 1.4904 4.0558 10 6 -0.4400 1.9837 4.4776 11 1 -0.8899 2.8253 3.9718 12 6 -1.1104 1.3600 5.5084 13 7 -0.5627 0.3349 6.1238 14 14 -2.7959 1.9719 6.0317 15 1 -3.1861 3.1298 5.1877 16 1 -3.7912 0.8821 5.8670 17 1 -2.7506 2.3898 7.4558 18 7 3.8344 1.6283 3.0892 19 7 4.7523 1.1107 2.3532 20 6 4.2925 0.9135 1.1401 21 7 4.9921 0.3762 0.0713 22 6 6.1277 1.2352 -0.3010 23 6 6.5526 0.8899 -1.7295 24 6 6.8285 -0.6111 -1.8352 25 1 7.7951 -0.8799 -2.2612 26 6 5.6247 -1.4926 -2.2003 27 6 6.2282 -1.5581 -0.8029 28 1 6.8108 -2.4496 -0.5704 29 6 5.4581 -0.9812 0.3769 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4027 -0.9314 35 1 2.3927 3.7799 4.1977 36 1 2.0304 4.3935 2.5666 37 1 0.7190 4.1922 3.7529 38 1 0.8457 0.4523 3.7319 39 1 1.6090 1.5599 4.8975 40 1 -1.0345 -0.1041 6.8487 41 1 5.8267 2.2816 -0.2515 42 1 6.9582 1.0606 0.3831 43 1 7.4565 1.4436 -1.9831 44 1 5.7551 1.1617 -2.4210 45 1 4.6566 -1.0035 -2.3085 46 1 5.8021 -2.3367 -2.8666 47 1 4.5993 -1.6170 0.5922 48 1 6.1082 -0.9507 1.2513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262944663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:32 Heat of formation + Delta-G solvation = 107.568519 kcal Electronic energy + Delta-G solvation = -27279.729626 eV Core-core repulsion = 23757.485840 eV Total energy + Delta-G solvation = -3522.243786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06702 -40.68457 -37.41496 -37.04201 -36.13877 -34.25687 -33.63674 -32.38197 -30.28537 -28.86985 -27.89661 -26.97938 -25.88115 -24.83988 -23.74856 -22.50030 -22.20602 -21.13587 -20.65258 -19.35170 -18.71925 -18.46022 -17.57610 -17.38314 -16.51707 -16.10381 -16.04525 -15.80802 -15.67340 -15.27991 -14.91946 -14.72473 -14.59463 -14.28313 -13.75483 -13.68016 -13.39573 -13.24568 -13.01275 -12.86948 -12.77742 -12.69959 -12.57164 -12.45549 -12.28805 -12.23345 -12.01532 -11.67606 -11.65468 -11.45835 -11.15817 -11.08718 -10.87875 -10.71649 -10.55026 -10.51531 -9.97765 -9.88349 -8.15263 -6.26800 0.63687 0.95231 1.43951 1.45156 1.55033 1.57854 1.76734 2.44229 2.61239 2.82732 3.19201 3.41786 3.58359 3.68026 3.81318 3.86645 3.90141 3.95040 4.05769 4.11658 4.22169 4.31942 4.35883 4.40005 4.44255 4.50013 4.52732 4.64344 4.67691 4.78473 4.81346 4.89430 4.93343 5.00321 5.06486 5.08994 5.16040 5.17723 5.26814 5.36708 5.39806 5.46914 5.54545 5.55996 5.65653 5.67686 5.70042 5.84431 6.19331 6.22507 6.89068 7.42446 7.70450 8.97543 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.003322 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.809099 B = 8426.697081 C = 8763.270264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.196 4.196 3 C 0.140 3.860 4 N -0.458 5.458 5 C 0.209 3.791 6 C 0.010 3.990 7 H 0.095 0.905 8 C -0.119 4.119 9 C 0.055 3.945 10 C -0.524 4.524 11 H 0.078 0.922 12 C -0.002 4.002 13 N -0.938 5.938 14 Si 0.965 3.035 15 H -0.251 1.251 16 H -0.282 1.282 17 H -0.285 1.285 18 N -0.330 5.330 19 N -0.350 5.350 20 C 0.337 3.663 21 N -0.444 5.444 22 C 0.063 3.937 23 C -0.075 4.075 24 C -0.141 4.141 25 H 0.123 0.877 26 C -0.158 4.158 27 C -0.155 4.155 28 H 0.121 0.879 29 C 0.097 3.903 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.076 0.924 38 H -0.023 1.023 39 H -0.013 1.013 40 H 0.261 0.739 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 0.325 -22.957 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.215 4.215 3 C 0.020 3.980 4 N -0.150 5.150 5 C -0.060 4.060 6 C -0.011 4.011 7 H 0.113 0.887 8 C -0.177 4.177 9 C 0.016 3.984 10 C -0.562 4.562 11 H 0.096 0.904 12 C -0.199 4.199 13 N -0.578 5.578 14 Si 0.790 3.210 15 H -0.174 1.174 16 H -0.208 1.208 17 H -0.211 1.211 18 N -0.169 5.169 19 N -0.193 5.193 20 C -0.020 4.020 21 N -0.170 5.170 22 C -0.063 4.063 23 C -0.113 4.113 24 C -0.159 4.159 25 H 0.141 0.859 26 C -0.195 4.195 27 C -0.173 4.173 28 H 0.139 0.861 29 C -0.030 4.030 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.095 0.905 38 H -0.005 1.005 39 H 0.005 0.995 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.125 0.875 47 H 0.083 0.917 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.477 0.218 -22.109 24.466 hybrid contribution -1.043 -0.483 0.795 1.397 sum 9.434 -0.265 -21.314 23.310 Atomic orbital electron populations 1.24161 0.95343 1.03663 0.95185 1.22909 0.96508 0.97526 1.04522 1.21199 0.91629 0.97871 0.87331 1.46567 1.10635 1.46398 1.11364 1.25416 0.98997 1.00172 0.81382 1.19764 0.86309 0.96335 0.98736 0.88732 1.21606 1.02444 0.93156 1.00506 1.18801 0.95259 0.92676 0.91621 1.21582 1.02095 1.15504 1.16983 0.90416 1.26001 1.02333 0.95042 0.96551 1.70164 1.40119 1.23316 1.24214 0.85390 0.78845 0.78696 0.78073 1.17445 1.20798 1.21146 1.73956 0.98610 1.18085 1.26240 1.74447 1.24910 1.18621 1.01360 1.22545 0.84985 1.02184 0.92305 1.59125 1.25532 1.03461 1.28904 1.22301 0.90034 0.95628 0.98384 1.21158 1.02498 0.94074 0.93541 1.22399 0.98498 0.92514 1.02500 0.85865 1.23106 0.97714 1.02605 0.96098 1.21899 1.03660 1.01789 0.89998 0.86146 1.21390 0.98221 0.86347 0.97035 0.87160 0.86671 0.87978 0.86995 0.85565 0.94150 0.91804 0.90540 1.00474 0.99484 0.93055 0.91263 0.93659 0.88478 0.90127 0.88929 0.87519 0.91722 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 14.32 67.78 0.97 -2.40 16 2 C -0.20 -4.88 9.85 25.65 0.25 -4.62 16 3 C 0.14 3.36 6.31 85.63 0.54 3.90 16 4 N -0.46 -15.25 2.79 -518.91 -1.45 -16.70 16 5 C 0.21 8.59 6.58 137.64 0.91 9.50 16 6 C 0.01 0.39 2.70 -11.54 -0.03 0.36 16 7 H 0.09 3.42 6.96 -2.39 -0.02 3.41 16 8 C -0.12 -4.44 8.98 71.98 0.65 -3.80 16 9 C 0.05 2.93 4.43 29.85 0.13 3.06 16 10 C -0.52 -28.43 8.41 25.60 0.22 -28.22 16 11 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 12 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 13 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 14 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 15 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 18 N -0.33 -15.40 12.18 -49.54 -0.60 -16.01 16 19 N -0.35 -14.77 12.12 -58.01 -0.70 -15.48 16 20 C 0.34 11.46 6.35 260.11 1.65 13.11 16 21 N -0.44 -11.29 4.47 -707.23 -3.16 -14.45 16 22 C 0.06 1.35 5.50 86.25 0.47 1.83 16 23 C -0.08 -1.04 6.09 30.58 0.19 -0.85 16 24 C -0.14 -1.89 6.27 -10.80 -0.07 -1.96 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 C -0.16 -2.22 9.78 30.58 0.30 -1.92 16 27 C -0.15 -2.65 6.08 -11.45 -0.07 -2.72 16 28 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 29 C 0.10 2.41 5.31 86.08 0.46 2.86 16 30 H 0.11 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.12 2.36 7.84 -2.91 -0.02 2.34 16 32 H 0.10 2.71 8.06 -2.91 -0.02 2.69 16 33 H 0.11 2.33 6.91 -2.39 -0.02 2.32 16 34 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.08 2.81 6.95 -2.38 -0.02 2.79 16 38 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.07 1.56 7.93 -2.39 -0.02 1.54 16 42 H 0.04 1.08 7.97 -2.39 -0.02 1.06 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.05 8.07 -2.39 -0.02 1.03 16 45 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.06 1.76 8.14 -2.39 -0.02 1.75 16 48 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 Total: -1.00 -73.50 389.83 4.34 -69.16 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.92 Total: 17.45 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 7.02 Total: -11.50 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -5.63 Total: -120.41 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.50 4.34 -69.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262944663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.730 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds