Wall clock time and date at job start Tue Mar 31 2020 11:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99854 * 2 1 4 4 N 1.46497 * 109.47032 * 125.27396 * 3 2 1 5 5 C 1.36741 * 127.13323 * 87.37317 * 4 3 2 6 6 C 1.50699 * 126.34972 * 359.97438 * 5 4 3 7 7 H 1.08991 * 109.46856 * 359.71192 * 6 5 4 8 8 C 1.53003 * 109.47069 * 239.71401 * 6 5 4 9 9 C 1.53002 * 109.46952 * 119.71441 * 6 5 4 10 10 C 1.50705 * 109.46792 * 184.99944 * 9 6 5 11 11 H 1.08001 * 119.99869 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99748 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99988 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47308 * 89.99610 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99981 * 14 12 10 17 17 H 1.48501 * 109.46942 * 329.99690 * 14 12 10 18 18 N 1.30304 * 107.30315 * 179.73260 * 5 4 3 19 19 N 1.28532 * 110.05202 * 0.26168 * 18 5 4 20 20 C 1.31216 * 109.85811 * 0.02562 * 19 18 5 21 21 N 1.38586 * 126.47187 * 180.02562 * 20 19 18 22 22 C 1.47163 * 110.99909 * 272.73485 * 21 20 19 23 23 C 1.52103 * 109.50034 * 198.66770 * 22 21 20 24 24 C 1.52376 * 110.31650 * 306.93077 * 23 22 21 25 25 H 1.09006 * 114.42276 * 164.08093 * 24 23 22 26 26 C 1.50897 * 119.18178 * 308.97390 * 24 23 22 27 27 C 1.52411 * 118.99240 * 19.80113 * 24 23 22 28 28 H 1.09004 * 117.38284 * 143.73711 * 27 24 23 29 29 C 1.46747 * 110.99802 * 35.81415 * 21 20 19 30 30 H 1.07997 * 119.99615 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99856 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99856 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47382 * 5.27477 * 3 2 1 34 34 H 1.09002 * 109.46984 * 245.27274 * 3 2 1 35 35 H 1.09004 * 109.46885 * 299.99869 * 8 6 5 36 36 H 1.09001 * 109.46692 * 59.99649 * 8 6 5 37 37 H 1.08991 * 109.47475 * 180.02562 * 8 6 5 38 38 H 1.08997 * 109.47016 * 304.99936 * 9 6 5 39 39 H 1.08999 * 109.46864 * 65.00337 * 9 6 5 40 40 H 0.97000 * 119.99750 * 179.97438 * 13 12 10 41 41 H 1.08997 * 109.61615 * 319.32276 * 22 21 20 42 42 H 1.08999 * 109.61495 * 79.85214 * 22 21 20 43 43 H 1.09000 * 110.14742 * 186.07242 * 23 22 21 44 44 H 1.09001 * 108.18955 * 66.55274 * 23 22 21 45 45 H 1.09004 * 117.27866 * 1.27257 * 26 24 23 46 46 H 1.09000 * 117.63355 * 216.39593 * 26 24 23 47 47 H 1.09005 * 109.36396 * 300.73139 * 29 21 20 48 48 H 1.09000 * 109.36342 * 60.47075 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.2800 0.8527 1.1477 6 6 5.0066 0.1956 0.0026 7 1 4.3490 0.1475 -0.8652 8 6 5.4215 -1.2205 0.4073 9 6 6.2527 1.0120 -0.3463 10 6 6.9119 0.4252 -1.5679 11 1 6.4850 -0.4434 -2.0472 12 6 8.0605 0.9966 -2.0730 13 7 8.5806 2.0540 -1.4890 14 14 8.8771 0.2698 -3.5876 15 1 8.3198 0.9102 -4.8060 16 1 10.3407 0.5132 -3.5259 17 1 8.6201 -1.1921 -3.6351 18 7 4.7582 1.0767 2.3389 19 7 3.8709 1.6530 3.0688 20 6 2.7699 1.8284 2.3768 21 7 1.5986 2.4164 2.8273 22 6 0.7243 1.4237 3.4722 23 6 -0.6965 1.9631 3.5350 24 6 -0.7115 3.3392 4.1891 25 1 -1.6298 3.9043 4.0290 26 6 -0.0219 3.5300 5.5176 27 6 0.5814 4.1444 4.2457 28 1 0.5046 5.2252 4.1264 29 6 1.8857 3.5195 3.7515 30 1 -0.5399 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3590 2.1314 0.0945 34 1 2.6175 1.4048 -0.9335 35 1 6.0792 -1.1723 1.2752 36 1 4.5337 -1.8020 0.6559 37 1 5.9475 -1.6956 -0.4207 38 1 5.9660 2.0440 -0.5484 39 1 6.9503 0.9859 0.4909 40 1 9.3889 2.4558 -1.8442 41 1 0.7438 0.4943 2.9030 42 1 1.0681 1.2397 4.4900 43 1 -1.3308 1.2845 4.1052 44 1 -1.0756 2.0425 2.5161 45 1 0.4828 2.6646 5.9473 46 1 -0.4843 4.2086 6.2344 47 1 2.4499 3.1398 4.6033 48 1 2.4751 4.2782 3.2367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262944664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:35 Heat of formation + Delta-G solvation = 123.649332 kcal Electronic energy + Delta-G solvation = -27206.527700 eV Core-core repulsion = 23684.981230 eV Total energy + Delta-G solvation = -3521.546469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.63519 -39.98564 -36.13708 -35.88294 -34.79687 -32.63813 -32.15594 -31.59825 -28.73443 -27.02227 -26.77543 -25.93714 -24.31392 -23.97608 -22.15647 -21.50013 -21.02182 -20.22255 -19.23140 -18.37173 -17.40461 -16.66770 -16.26708 -16.19291 -15.48540 -15.21706 -14.72591 -14.56164 -14.29174 -14.13350 -13.81234 -13.45901 -13.22693 -12.90029 -12.87765 -12.45264 -12.37126 -11.81555 -11.68101 -11.64694 -11.56154 -11.31566 -11.05496 -11.01897 -10.94155 -10.73227 -10.51939 -10.47337 -10.18652 -10.10495 -9.88722 -9.85627 -9.72697 -9.60529 -9.11149 -8.91564 -8.36618 -8.19216 -5.99840 -4.03573 1.81052 2.11587 2.61650 3.30585 3.31304 3.38359 3.40614 3.45684 3.82426 4.38398 4.44111 4.48247 4.60364 4.64917 4.75137 4.78140 4.89950 4.96635 5.04418 5.08111 5.24805 5.33805 5.35439 5.40760 5.45493 5.52553 5.53875 5.61922 5.68414 5.72325 5.86902 5.88770 5.90207 5.94310 6.04123 6.10575 6.24237 6.26762 6.32170 6.48164 6.63874 6.70278 6.83350 6.93134 7.05821 7.47368 7.63139 7.79343 7.99461 8.35250 9.02023 9.21411 9.59968 11.11218 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.003242 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.263035 B = 8635.864760 C = 9281.736384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.172 4.172 3 C 0.138 3.862 4 N -0.467 5.467 5 C 0.219 3.781 6 C -0.002 4.002 7 H 0.072 0.928 8 C -0.125 4.125 9 C 0.038 3.962 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.286 5.286 19 N -0.316 5.316 20 C 0.323 3.677 21 N -0.450 5.450 22 C 0.060 3.940 23 C -0.083 4.083 24 C -0.132 4.132 25 H 0.102 0.898 26 C -0.181 4.181 27 C -0.147 4.147 28 H 0.112 0.888 29 C 0.098 3.902 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.014 0.986 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.508 -0.150 8.075 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.191 4.191 3 C 0.015 3.985 4 N -0.159 5.159 5 C -0.049 4.049 6 C -0.023 4.023 7 H 0.091 0.909 8 C -0.183 4.183 9 C 0.000 4.000 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.719 3.281 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.124 5.124 19 N -0.160 5.160 20 C -0.033 4.033 21 N -0.175 5.175 22 C -0.068 4.068 23 C -0.120 4.120 24 C -0.150 4.150 25 H 0.120 0.880 26 C -0.218 4.218 27 C -0.166 4.166 28 H 0.130 0.870 29 C -0.030 4.030 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.081 0.919 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.636 0.228 8.828 23.369 hybrid contribution -0.088 -0.437 -1.333 1.406 sum -21.725 -0.210 7.495 22.982 Atomic orbital electron populations 1.23897 0.95450 1.02269 0.98785 1.23175 0.96348 0.98303 1.01282 1.20915 0.91865 0.97159 0.88548 1.46318 1.12778 1.46251 1.10595 1.25656 0.81416 0.99400 0.98383 1.19998 0.97787 0.95644 0.88888 0.90943 1.21668 0.99822 0.94115 1.02688 1.19108 0.89649 0.93976 0.97233 1.21137 1.09631 1.13546 1.11567 0.92340 1.25003 0.97119 0.94983 0.97155 1.69983 1.21328 1.21332 1.40226 0.86608 0.78727 0.79512 0.83227 1.20755 1.21226 1.19807 1.74049 1.22188 1.15241 1.00951 1.74538 0.98721 1.17229 1.25542 1.22181 0.94156 1.02571 0.84376 1.58783 1.09720 1.09413 1.39558 1.22065 0.92730 0.93962 0.98003 1.20805 0.95473 0.94577 1.01193 1.21603 0.95983 0.97755 0.99672 0.88002 1.22975 1.04525 1.03298 0.91042 1.22324 0.93547 0.98958 1.01777 0.86990 1.21564 0.95054 0.91741 0.94592 0.87938 0.88081 0.86649 0.87961 0.87558 0.92065 0.95090 0.90646 0.96809 0.94956 0.92920 0.90463 0.93400 0.90590 0.90737 0.88761 0.88682 0.91944 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.85 9.85 -36.03 -0.35 -2.20 16 3 C 0.14 1.75 6.27 -5.20 -0.03 1.72 16 4 N -0.47 -7.78 2.79 -115.37 -0.32 -8.10 16 5 C 0.22 4.38 6.58 -154.01 -1.01 3.36 16 6 C 0.00 -0.04 2.71 -91.77 -0.25 -0.29 16 7 H 0.07 1.36 7.01 -51.93 -0.36 0.99 16 8 C -0.12 -2.36 8.99 37.16 0.33 -2.02 16 9 C 0.04 0.99 4.43 -27.88 -0.12 0.86 16 10 C -0.52 -14.11 8.41 -34.44 -0.29 -14.40 16 11 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 14 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 18 N -0.29 -6.35 12.18 32.99 0.40 -5.95 16 19 N -0.32 -6.41 11.55 30.31 0.35 -6.06 16 20 C 0.32 5.45 6.64 -318.87 -2.12 3.34 16 21 N -0.45 -5.90 4.67 -175.06 -0.82 -6.72 16 22 C 0.06 0.65 5.25 -4.14 -0.02 0.63 16 23 C -0.08 -0.67 6.17 -27.51 -0.17 -0.84 16 24 C -0.13 -1.06 6.08 -92.30 -0.56 -1.62 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 26 C -0.18 -1.47 9.58 -27.48 -0.26 -1.73 16 27 C -0.15 -1.37 6.37 -90.69 -0.58 -1.95 16 28 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 29 C 0.10 1.21 5.06 -3.99 -0.02 1.19 16 30 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.10 0.74 7.84 -52.49 -0.41 0.33 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.10 1.16 7.79 -51.93 -0.40 0.75 16 34 H 0.11 1.36 7.35 -51.93 -0.38 0.98 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 42 H 0.05 0.56 7.00 -51.93 -0.36 0.19 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.83 7.24 -51.93 -0.38 0.45 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.85 7.76 -51.93 -0.40 0.45 16 48 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -32.27 387.25 -12.03 -44.30 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.06 Total: -0.15 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -5.14 Total: -13.36 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.35 Total: -52.83 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.27 -12.03 -44.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262944664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.948 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds