Wall clock time and date at job start Tue Mar 31 2020 11:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50698 * 119.99854 * 2 1 4 4 N 1.46497 * 109.47032 * 125.27396 * 3 2 1 5 5 C 1.36741 * 127.13323 * 87.37317 * 4 3 2 6 6 C 1.50699 * 126.34972 * 359.97438 * 5 4 3 7 7 H 1.08991 * 109.46856 * 359.71192 * 6 5 4 8 8 C 1.53003 * 109.47069 * 239.71401 * 6 5 4 9 9 C 1.53002 * 109.46952 * 119.71441 * 6 5 4 10 10 C 1.50705 * 109.46792 * 184.99944 * 9 6 5 11 11 H 1.08001 * 119.99869 * 359.97438 * 10 9 6 12 12 C 1.37877 * 119.99748 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99988 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99902 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47308 * 89.99610 * 14 12 10 16 16 H 1.48495 * 109.47293 * 209.99981 * 14 12 10 17 17 H 1.48501 * 109.46942 * 329.99690 * 14 12 10 18 18 N 1.30304 * 107.30315 * 179.73260 * 5 4 3 19 19 N 1.28532 * 110.05202 * 0.26168 * 18 5 4 20 20 C 1.31216 * 109.85811 * 0.02562 * 19 18 5 21 21 N 1.38586 * 126.47187 * 180.02562 * 20 19 18 22 22 C 1.47163 * 110.99909 * 272.73485 * 21 20 19 23 23 C 1.52103 * 109.50034 * 198.66770 * 22 21 20 24 24 C 1.52376 * 110.31650 * 306.93077 * 23 22 21 25 25 H 1.09006 * 114.42276 * 164.08093 * 24 23 22 26 26 C 1.50897 * 119.18178 * 308.97390 * 24 23 22 27 27 C 1.52411 * 118.99240 * 19.80113 * 24 23 22 28 28 H 1.09004 * 117.38284 * 143.73711 * 27 24 23 29 29 C 1.46747 * 110.99802 * 35.81415 * 21 20 19 30 30 H 1.07997 * 119.99615 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99856 * 0.02562 * 1 2 3 32 32 H 1.07999 * 119.99856 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47382 * 5.27477 * 3 2 1 34 34 H 1.09002 * 109.46984 * 245.27274 * 3 2 1 35 35 H 1.09004 * 109.46885 * 299.99869 * 8 6 5 36 36 H 1.09001 * 109.46692 * 59.99649 * 8 6 5 37 37 H 1.08991 * 109.47475 * 180.02562 * 8 6 5 38 38 H 1.08997 * 109.47016 * 304.99936 * 9 6 5 39 39 H 1.08999 * 109.46864 * 65.00337 * 9 6 5 40 40 H 0.97000 * 119.99750 * 179.97438 * 13 12 10 41 41 H 1.08997 * 109.61615 * 319.32276 * 22 21 20 42 42 H 1.08999 * 109.61495 * 79.85214 * 22 21 20 43 43 H 1.09000 * 110.14742 * 186.07242 * 23 22 21 44 44 H 1.09001 * 108.18955 * 66.55274 * 23 22 21 45 45 H 1.09004 * 117.27866 * 1.27257 * 26 24 23 46 46 H 1.09000 * 117.63355 * 216.39593 * 26 24 23 47 47 H 1.09005 * 109.36396 * 300.73139 * 29 21 20 48 48 H 1.09000 * 109.36342 * 60.47075 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 4.2800 0.8527 1.1477 6 6 5.0066 0.1956 0.0026 7 1 4.3490 0.1475 -0.8652 8 6 5.4215 -1.2205 0.4073 9 6 6.2527 1.0120 -0.3463 10 6 6.9119 0.4252 -1.5679 11 1 6.4850 -0.4434 -2.0472 12 6 8.0605 0.9966 -2.0730 13 7 8.5806 2.0540 -1.4890 14 14 8.8771 0.2698 -3.5876 15 1 8.3198 0.9102 -4.8060 16 1 10.3407 0.5132 -3.5259 17 1 8.6201 -1.1921 -3.6351 18 7 4.7582 1.0767 2.3389 19 7 3.8709 1.6530 3.0688 20 6 2.7699 1.8284 2.3768 21 7 1.5986 2.4164 2.8273 22 6 0.7243 1.4237 3.4722 23 6 -0.6965 1.9631 3.5350 24 6 -0.7115 3.3392 4.1891 25 1 -1.6298 3.9043 4.0290 26 6 -0.0219 3.5300 5.5176 27 6 0.5814 4.1444 4.2457 28 1 0.5046 5.2252 4.1264 29 6 1.8857 3.5195 3.7515 30 1 -0.5399 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3590 2.1314 0.0945 34 1 2.6175 1.4048 -0.9335 35 1 6.0792 -1.1723 1.2752 36 1 4.5337 -1.8020 0.6559 37 1 5.9475 -1.6956 -0.4207 38 1 5.9660 2.0440 -0.5484 39 1 6.9503 0.9859 0.4909 40 1 9.3889 2.4558 -1.8442 41 1 0.7438 0.4943 2.9030 42 1 1.0681 1.2397 4.4900 43 1 -1.3308 1.2845 4.1052 44 1 -1.0756 2.0425 2.5161 45 1 0.4828 2.6646 5.9473 46 1 -0.4843 4.2086 6.2344 47 1 2.4499 3.1398 4.6033 48 1 2.4751 4.2782 3.2367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262944664.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:35 Heat of formation + Delta-G solvation = 107.596406 kcal Electronic energy + Delta-G solvation = -27207.223807 eV Core-core repulsion = 23684.981230 eV Total energy + Delta-G solvation = -3522.242577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06591 -40.84873 -37.39317 -37.13521 -36.15938 -34.27078 -33.61939 -32.44072 -30.23875 -28.87906 -27.88604 -26.92326 -25.94646 -25.03939 -23.85130 -22.28089 -22.22662 -21.28362 -20.52428 -19.29941 -18.67725 -18.42099 -17.57107 -17.34738 -16.58922 -16.41996 -16.17355 -15.93531 -15.43658 -15.07428 -14.97770 -14.79178 -14.56633 -14.27662 -13.72479 -13.70738 -13.62161 -13.38587 -13.02102 -12.84272 -12.75757 -12.50391 -12.45108 -12.42410 -12.31150 -12.25577 -12.03396 -11.81339 -11.57473 -11.51941 -11.19418 -11.13847 -10.96734 -10.75284 -10.55522 -10.51596 -10.21409 -9.58793 -8.16635 -6.28645 0.70296 0.92093 1.43315 1.45303 1.53597 1.56308 1.77873 2.43214 2.55698 2.95292 3.17381 3.43518 3.58172 3.65687 3.71455 3.83445 3.89552 3.96718 4.01437 4.08328 4.19118 4.22249 4.33835 4.40100 4.40566 4.51161 4.54016 4.64211 4.75680 4.78382 4.82594 4.88203 4.95735 5.00373 5.07370 5.10124 5.15447 5.18184 5.22614 5.30946 5.35650 5.44338 5.52888 5.60757 5.62473 5.67148 5.71389 5.82864 6.18013 6.21379 6.87068 7.40651 7.72009 8.95989 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021043 B = 0.003242 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.263035 B = 8635.864760 C = 9281.736384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.201 4.201 3 C 0.133 3.867 4 N -0.461 5.461 5 C 0.205 3.795 6 C 0.010 3.990 7 H 0.094 0.906 8 C -0.116 4.116 9 C 0.051 3.949 10 C -0.528 4.528 11 H 0.077 0.923 12 C -0.003 4.003 13 N -0.937 5.937 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.256 1.256 18 N -0.329 5.329 19 N -0.356 5.356 20 C 0.342 3.658 21 N -0.440 5.440 22 C 0.059 3.941 23 C -0.077 4.077 24 C -0.120 4.120 25 H 0.125 0.875 26 C -0.176 4.176 27 C -0.161 4.161 28 H 0.124 0.876 29 C 0.098 3.902 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.039 0.961 36 H 0.061 0.939 37 H 0.075 0.925 38 H -0.023 1.023 39 H -0.011 1.011 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.113 0.887 47 H 0.042 0.958 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.357 -1.219 6.953 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.220 4.220 3 C 0.012 3.988 4 N -0.153 5.153 5 C -0.064 4.064 6 C -0.011 4.011 7 H 0.112 0.888 8 C -0.174 4.174 9 C 0.013 3.987 10 C -0.566 4.566 11 H 0.095 0.905 12 C -0.200 4.200 13 N -0.578 5.578 14 Si 0.792 3.208 15 H -0.197 1.197 16 H -0.215 1.215 17 H -0.180 1.180 18 N -0.167 5.167 19 N -0.200 5.200 20 C -0.016 4.016 21 N -0.166 5.166 22 C -0.067 4.067 23 C -0.114 4.114 24 C -0.139 4.139 25 H 0.143 0.857 26 C -0.213 4.213 27 C -0.179 4.179 28 H 0.142 0.858 29 C -0.030 4.030 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.094 0.906 38 H -0.004 1.004 39 H 0.008 0.992 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.131 0.869 47 H 0.060 0.940 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.525 -0.860 7.698 26.674 hybrid contribution 0.988 -0.039 -0.910 1.344 sum -24.536 -0.899 6.788 25.474 Atomic orbital electron populations 1.24174 0.94399 1.03962 0.94371 1.22948 0.97117 0.96635 1.05254 1.21228 0.91478 0.99299 0.86799 1.46498 1.12231 1.45096 1.11435 1.25376 0.82925 1.00362 0.97732 1.19742 0.95769 0.95540 0.90039 0.88825 1.21572 1.00736 0.93423 1.01693 1.18845 0.91266 0.93014 0.95599 1.21567 1.09659 1.13779 1.11582 0.90477 1.26031 0.98006 0.95281 1.00703 1.70160 1.21992 1.23237 1.42383 0.85410 0.77078 0.79471 0.78875 1.19707 1.21509 1.17952 1.73932 1.23863 1.16600 1.02331 1.74438 0.99922 1.19030 1.26572 1.22624 0.94401 1.00304 0.84227 1.59108 1.07778 1.09756 1.39971 1.22177 0.94040 0.93519 0.96992 1.20850 0.93215 0.94935 1.02437 1.21751 0.95774 0.97490 0.98865 0.85691 1.23008 1.04017 1.03011 0.91232 1.22261 0.92704 0.99591 1.03375 0.85780 1.21542 0.96919 0.91065 0.93428 0.85969 0.86464 0.87587 0.86321 0.88125 0.94160 0.91978 0.90635 1.00435 0.99238 0.92969 0.90758 0.94459 0.88286 0.89504 0.89862 0.86892 0.93992 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 14.32 67.77 0.97 -0.70 16 2 C -0.20 -3.87 9.85 25.64 0.25 -3.61 16 3 C 0.13 3.23 6.27 85.63 0.54 3.77 16 4 N -0.46 -15.59 2.79 -518.91 -1.45 -17.04 16 5 C 0.20 8.57 6.58 137.64 0.91 9.47 16 6 C 0.01 0.42 2.71 -11.54 -0.03 0.39 16 7 H 0.09 3.50 7.01 -2.39 -0.02 3.49 16 8 C -0.12 -4.43 8.99 71.98 0.65 -3.78 16 9 C 0.05 2.77 4.43 29.85 0.13 2.90 16 10 C -0.53 -29.15 8.41 25.60 0.22 -28.94 16 11 H 0.08 3.89 7.06 -2.91 -0.02 3.87 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 13 N -0.94 -58.55 13.29 21.45 0.28 -58.26 16 14 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 18 N -0.33 -15.55 12.18 -49.53 -0.60 -16.16 16 19 N -0.36 -15.25 11.55 -58.00 -0.67 -15.92 16 20 C 0.34 11.81 6.64 260.11 1.73 13.54 16 21 N -0.44 -11.35 4.67 -707.77 -3.31 -14.66 16 22 C 0.06 1.20 5.25 85.96 0.45 1.65 16 23 C -0.08 -0.96 6.17 30.09 0.19 -0.77 16 24 C -0.12 -1.51 6.08 -11.88 -0.07 -1.59 16 25 H 0.13 1.10 8.14 -2.38 -0.02 1.09 16 26 C -0.18 -2.45 9.58 30.11 0.29 -2.16 16 27 C -0.16 -2.74 6.37 -10.84 -0.07 -2.81 16 28 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 29 C 0.10 2.46 5.06 86.28 0.44 2.90 16 30 H 0.12 1.15 8.06 -2.91 -0.02 1.12 16 31 H 0.12 1.15 7.84 -2.91 -0.02 1.13 16 32 H 0.11 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.12 2.45 7.79 -2.39 -0.02 2.43 16 34 H 0.10 2.53 7.35 -2.39 -0.02 2.51 16 35 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.84 6.95 -2.39 -0.02 2.82 16 38 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.07 1.57 7.93 -2.39 -0.02 1.55 16 42 H 0.04 0.84 7.00 -2.39 -0.02 0.83 16 43 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 1.37 7.24 -2.39 -0.02 1.35 16 46 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.04 1.22 7.76 -2.38 -0.02 1.20 16 48 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -75.16 387.25 4.24 -70.92 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.92 Total: 14.77 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 7.04 Total: -9.43 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -5.74 Total: -122.04 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -75.16 4.24 -70.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262944664.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.517 kcal (2) G-P(sol) polarization free energy of solvation -75.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds