Wall clock time and date at job start Tue Mar 31 2020 11:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00312 * 2 1 4 4 N 1.46500 * 109.47152 * 124.99985 * 3 2 1 5 5 C 1.36733 * 127.13665 * 95.19831 * 4 3 2 6 6 C 1.50698 * 126.34760 * 0.02562 * 5 4 3 7 7 C 1.53002 * 109.47034 * 269.71029 * 6 5 4 8 8 C 1.50708 * 109.47030 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99662 * 179.72587 * 8 7 6 11 11 N 1.31517 * 119.99761 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47251 * 90.00254 * 12 10 8 14 14 H 1.48506 * 109.47013 * 209.99722 * 12 10 8 15 15 H 1.48499 * 109.47454 * 329.99984 * 12 10 8 16 16 N 1.30298 * 107.30546 * 179.73520 * 5 4 3 17 17 N 1.28525 * 110.05274 * 0.26356 * 16 5 4 18 18 C 1.31213 * 109.85971 * 0.02562 * 17 16 5 19 19 N 1.38590 * 126.47027 * 180.02562 * 18 17 16 20 20 C 1.46843 * 111.00329 * 59.27383 * 19 18 17 21 21 C 1.53039 * 109.52214 * 174.16231 * 20 19 18 22 22 C 1.53112 * 109.28044 * 59.17845 * 21 20 19 23 23 C 1.50699 * 109.52524 * 182.44116 * 22 21 20 24 24 C 1.30998 * 120.00058 * 239.68454 * 23 22 21 25 25 C 1.53129 * 109.16031 * 302.34455 * 22 21 20 26 26 C 1.46852 * 110.99668 * 295.06001 * 19 18 17 27 27 H 1.08000 * 119.99606 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00156 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99606 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46866 * 5.00523 * 3 2 1 31 31 H 1.08997 * 109.47163 * 244.99936 * 3 2 1 32 32 H 1.09008 * 109.47558 * 149.70833 * 6 5 4 33 33 H 1.09000 * 109.47476 * 29.70879 * 6 5 4 34 34 H 1.09000 * 109.46910 * 60.00144 * 7 6 5 35 35 H 1.08996 * 109.47110 * 299.99766 * 7 6 5 36 36 H 0.96993 * 119.99958 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.45876 * 294.17948 * 20 19 18 38 38 H 1.08996 * 109.46129 * 54.13947 * 20 19 18 39 39 H 1.08997 * 109.49792 * 299.23644 * 21 20 19 40 40 H 1.09005 * 109.49773 * 179.11799 * 21 20 19 41 41 H 1.09001 * 109.52368 * 62.24685 * 22 21 20 42 42 H 1.07994 * 119.99673 * 59.68042 * 23 22 21 43 43 H 1.07998 * 120.00033 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00173 * 359.97438 * 24 23 22 45 45 H 1.08993 * 109.50155 * 297.71096 * 25 22 21 46 46 H 1.09001 * 109.49874 * 177.59346 * 25 22 21 47 47 H 1.09003 * 109.46321 * 305.85888 * 26 19 18 48 48 H 1.08994 * 109.45849 * 65.82652 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3183 0.9923 1.1193 6 6 5.1072 0.5150 -0.0727 7 6 5.0333 -1.0110 -0.1552 8 6 5.8228 -1.4884 -1.3470 9 1 6.3270 -0.7747 -1.9816 10 6 5.9063 -2.8365 -1.6233 11 7 6.5956 -3.2532 -2.6630 12 14 5.0416 -4.0714 -0.5202 13 1 3.6647 -4.3065 -1.0245 14 1 5.7952 -5.3510 -0.5238 15 1 4.9774 -3.5385 0.8644 16 7 4.7735 1.1639 2.3281 17 7 3.8326 1.5803 3.0983 18 6 2.7174 1.6970 2.4168 19 7 1.4921 2.1188 2.9080 20 6 1.5871 3.4735 3.4667 21 6 0.1923 3.9613 3.8652 22 6 -0.4019 3.0026 4.9006 23 6 -1.7991 3.4442 5.2524 24 6 -2.0961 3.7535 6.4903 25 6 -0.4450 1.5900 4.3110 26 6 0.9682 1.1709 3.8997 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6214 1.4025 -0.9313 32 1 6.1474 0.8233 0.0328 33 1 4.6902 0.9486 -0.9816 34 1 3.9932 -1.3192 -0.2608 35 1 5.4504 -1.4446 0.7537 36 1 6.6546 -4.2016 -2.8572 37 1 2.2318 3.4594 4.3455 38 1 2.0073 4.1460 2.7190 39 1 -0.4490 3.9887 2.9843 40 1 0.2653 4.9607 4.2943 41 1 0.2183 3.0043 5.7969 42 1 -2.5555 3.5058 4.4841 43 1 -3.0973 4.0704 6.7423 44 1 -1.3397 3.6916 7.2587 45 1 -1.0964 1.5801 3.4372 46 1 -0.8275 0.8952 5.0587 47 1 0.9388 0.1711 3.4664 48 1 1.6157 1.1677 4.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262952180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:07 Heat of formation + Delta-G solvation = 112.431851 kcal Electronic energy + Delta-G solvation = -26864.260106 eV Core-core repulsion = 23342.227210 eV Total energy + Delta-G solvation = -3522.032896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72173 -39.42939 -36.10018 -35.71500 -34.11901 -32.63267 -32.12548 -31.22651 -31.19524 -28.62296 -26.77481 -25.57148 -24.68487 -23.44712 -21.73747 -21.28944 -20.69416 -20.13850 -19.88555 -19.44671 -17.55064 -16.84436 -16.35336 -16.10143 -15.35473 -15.11364 -14.77293 -14.67835 -14.35327 -14.08735 -13.92701 -13.57731 -13.43689 -13.27388 -13.12328 -12.69082 -12.55727 -12.36610 -12.15671 -11.64239 -11.56469 -11.49131 -11.29867 -11.11883 -11.10374 -11.06825 -10.65515 -10.49945 -10.28904 -10.12225 -9.90265 -9.83104 -9.63482 -9.58140 -9.30842 -8.82906 -8.60849 -8.55086 -6.11306 -4.10579 1.86067 1.94052 2.05619 2.62962 3.15058 3.25028 3.34714 3.40271 3.71039 4.32268 4.39560 4.44448 4.61994 4.70290 4.75597 4.85670 4.88619 4.93994 5.01513 5.13987 5.15014 5.22651 5.25090 5.32784 5.38411 5.42826 5.45379 5.51737 5.59298 5.62032 5.71665 5.77084 5.80182 5.83018 6.06541 6.18322 6.20912 6.28054 6.28915 6.44354 6.47079 6.50738 6.60552 6.62559 6.84605 7.11618 7.26765 7.39832 7.67835 8.42913 8.91996 9.05563 9.50442 11.01628 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.003147 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.307996 B = 8894.827045 C = 9242.360670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.172 4.172 3 C 0.143 3.857 4 N -0.461 5.461 5 C 0.211 3.789 6 C -0.023 4.023 7 C -0.003 4.003 8 C -0.522 4.522 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.899 5.899 12 Si 0.874 3.126 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.265 1.265 16 N -0.297 5.297 17 N -0.314 5.314 18 C 0.325 3.675 19 N -0.458 5.458 20 C 0.067 3.933 21 C -0.105 4.105 22 C -0.065 4.065 23 C -0.143 4.143 24 C -0.195 4.195 25 C -0.104 4.104 26 C 0.068 3.932 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.010 0.990 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 14.018 11.941 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.190 4.190 3 C 0.021 3.979 4 N -0.153 5.153 5 C -0.056 4.056 6 C -0.063 4.063 7 C -0.042 4.042 8 C -0.560 4.560 9 H 0.094 0.906 10 C -0.130 4.130 11 N -0.537 5.537 12 Si 0.702 3.298 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.189 1.189 16 N -0.136 5.136 17 N -0.157 5.157 18 C -0.031 4.031 19 N -0.184 5.184 20 C -0.060 4.060 21 C -0.143 4.143 22 C -0.084 4.084 23 C -0.161 4.161 24 C -0.232 4.232 25 C -0.142 4.142 26 C -0.059 4.059 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.987 13.934 12.615 26.717 hybrid contribution -0.905 -0.941 -0.023 1.306 sum -19.892 12.992 12.591 26.889 Atomic orbital electron populations 1.23833 0.95400 1.02072 0.98789 1.23161 0.96365 0.98325 1.01188 1.20895 0.91767 0.97338 0.87928 1.46389 1.10184 1.49617 1.09144 1.25655 0.81443 0.99847 0.98667 1.20249 0.98161 0.99217 0.88647 1.19556 0.96853 0.89275 0.98466 1.21005 1.31752 0.93117 1.10118 0.90585 1.24954 0.94835 0.98364 0.94878 1.69894 1.41064 1.15360 1.27404 0.86856 0.79809 0.81080 0.82101 1.20330 1.21151 1.18934 1.74065 1.22705 1.17592 0.99267 1.74502 0.96870 1.18396 1.25980 1.22137 0.92667 1.04847 0.83436 1.58526 1.18477 1.03490 1.37858 1.22119 0.97381 0.87354 0.99144 1.21607 0.95371 0.98342 0.98940 1.20455 0.93993 0.95142 0.98796 1.22923 0.96973 0.98823 0.97417 1.23863 1.01400 1.01240 0.96694 1.21604 0.95966 0.95662 1.00996 1.22116 0.95478 0.95031 0.93277 0.88249 0.88040 0.86354 0.88364 0.87581 0.88650 0.90604 0.97217 0.95717 0.92593 0.92916 0.90607 0.90782 0.90884 0.90750 0.87348 0.88586 0.88641 0.90701 0.90897 0.90494 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 14.32 29.01 0.42 -1.26 16 2 C -0.17 -2.21 9.85 -36.03 -0.35 -2.56 16 3 C 0.14 1.81 6.50 -5.19 -0.03 1.77 16 4 N -0.46 -7.38 2.79 -115.37 -0.32 -7.70 16 5 C 0.21 3.99 7.32 -154.02 -1.13 2.86 16 6 C -0.02 -0.45 5.52 -27.88 -0.15 -0.60 16 7 C 0.00 -0.07 4.02 -27.88 -0.11 -0.18 16 8 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16 9 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 10 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 11 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 12 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 16 N -0.30 -6.18 12.18 32.99 0.40 -5.78 16 17 N -0.31 -5.99 12.18 30.32 0.37 -5.62 16 18 C 0.33 5.19 6.42 -318.86 -2.05 3.15 16 19 N -0.46 -5.59 4.67 -174.55 -0.82 -6.40 16 20 C 0.07 0.71 5.36 -3.83 -0.02 0.69 16 21 C -0.10 -0.81 5.36 -26.65 -0.14 -0.95 16 22 C -0.07 -0.49 2.54 -91.65 -0.23 -0.73 16 23 C -0.14 -0.96 8.78 -36.03 -0.32 -1.28 16 24 C -0.20 -1.24 14.32 29.02 0.42 -0.83 16 25 C -0.10 -0.86 5.36 -26.65 -0.14 -1.00 16 26 C 0.07 0.77 5.40 -3.83 -0.02 0.75 16 27 H 0.10 0.85 7.84 -52.49 -0.41 0.44 16 28 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.12 1.82 7.28 -52.49 -0.38 1.44 16 30 H 0.10 1.03 7.79 -51.93 -0.40 0.63 16 31 H 0.11 1.28 7.10 -51.93 -0.37 0.91 16 32 H 0.10 1.87 8.14 -51.92 -0.42 1.44 16 33 H 0.08 1.32 7.17 -51.93 -0.37 0.95 16 34 H 0.01 0.22 6.80 -51.93 -0.35 -0.13 16 35 H 0.02 0.62 7.18 -51.93 -0.37 0.24 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 42 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 44 H 0.10 0.59 7.84 -52.48 -0.41 0.18 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.96 8.10 -51.93 -0.42 0.53 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -32.10 390.67 -10.82 -42.92 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.14 Total: -1.00 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -4.31 Total: -12.87 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.41 Total: -51.83 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.10 -10.82 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262952180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.353 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds