Wall clock time and date at job start Tue Mar 31 2020 11:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00312 * 2 1 4 4 N 1.46500 * 109.47152 * 124.99985 * 3 2 1 5 5 C 1.36733 * 127.13665 * 95.19831 * 4 3 2 6 6 C 1.50698 * 126.34760 * 0.02562 * 5 4 3 7 7 C 1.53002 * 109.47034 * 269.71029 * 6 5 4 8 8 C 1.50708 * 109.47030 * 180.02562 * 7 6 5 9 9 H 1.07997 * 119.99801 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99662 * 179.72587 * 8 7 6 11 11 N 1.31517 * 119.99761 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00124 * 359.97438 * 10 8 7 13 13 H 1.48505 * 109.47251 * 90.00254 * 12 10 8 14 14 H 1.48506 * 109.47013 * 209.99722 * 12 10 8 15 15 H 1.48499 * 109.47454 * 329.99984 * 12 10 8 16 16 N 1.30298 * 107.30546 * 179.73520 * 5 4 3 17 17 N 1.28525 * 110.05274 * 0.26356 * 16 5 4 18 18 C 1.31213 * 109.85971 * 0.02562 * 17 16 5 19 19 N 1.38590 * 126.47027 * 180.02562 * 18 17 16 20 20 C 1.46843 * 111.00329 * 59.27383 * 19 18 17 21 21 C 1.53039 * 109.52214 * 174.16231 * 20 19 18 22 22 C 1.53112 * 109.28044 * 59.17845 * 21 20 19 23 23 C 1.50699 * 109.52524 * 182.44116 * 22 21 20 24 24 C 1.30998 * 120.00058 * 239.68454 * 23 22 21 25 25 C 1.53129 * 109.16031 * 302.34455 * 22 21 20 26 26 C 1.46852 * 110.99668 * 295.06001 * 19 18 17 27 27 H 1.08000 * 119.99606 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00156 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99606 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46866 * 5.00523 * 3 2 1 31 31 H 1.08997 * 109.47163 * 244.99936 * 3 2 1 32 32 H 1.09008 * 109.47558 * 149.70833 * 6 5 4 33 33 H 1.09000 * 109.47476 * 29.70879 * 6 5 4 34 34 H 1.09000 * 109.46910 * 60.00144 * 7 6 5 35 35 H 1.08996 * 109.47110 * 299.99766 * 7 6 5 36 36 H 0.96993 * 119.99958 * 179.97438 * 11 10 8 37 37 H 1.09001 * 109.45876 * 294.17948 * 20 19 18 38 38 H 1.08996 * 109.46129 * 54.13947 * 20 19 18 39 39 H 1.08997 * 109.49792 * 299.23644 * 21 20 19 40 40 H 1.09005 * 109.49773 * 179.11799 * 21 20 19 41 41 H 1.09001 * 109.52368 * 62.24685 * 22 21 20 42 42 H 1.07994 * 119.99673 * 59.68042 * 23 22 21 43 43 H 1.07998 * 120.00033 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00173 * 359.97438 * 24 23 22 45 45 H 1.08993 * 109.50155 * 297.71096 * 25 22 21 46 46 H 1.09001 * 109.49874 * 177.59346 * 25 22 21 47 47 H 1.09003 * 109.46321 * 305.85888 * 26 19 18 48 48 H 1.08994 * 109.45849 * 65.82652 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 4.3183 0.9923 1.1193 6 6 5.1072 0.5150 -0.0727 7 6 5.0333 -1.0110 -0.1552 8 6 5.8228 -1.4884 -1.3470 9 1 6.3270 -0.7747 -1.9816 10 6 5.9063 -2.8365 -1.6233 11 7 6.5956 -3.2532 -2.6630 12 14 5.0416 -4.0714 -0.5202 13 1 3.6647 -4.3065 -1.0245 14 1 5.7952 -5.3510 -0.5238 15 1 4.9774 -3.5385 0.8644 16 7 4.7735 1.1639 2.3281 17 7 3.8326 1.5803 3.0983 18 6 2.7174 1.6970 2.4168 19 7 1.4921 2.1188 2.9080 20 6 1.5871 3.4735 3.4667 21 6 0.1923 3.9613 3.8652 22 6 -0.4019 3.0026 4.9006 23 6 -1.7991 3.4442 5.2524 24 6 -2.0961 3.7535 6.4903 25 6 -0.4450 1.5900 4.3110 26 6 0.9682 1.1709 3.8997 27 1 -0.5399 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1316 0.0897 31 1 2.6214 1.4025 -0.9313 32 1 6.1474 0.8233 0.0328 33 1 4.6902 0.9486 -0.9816 34 1 3.9932 -1.3192 -0.2608 35 1 5.4504 -1.4446 0.7537 36 1 6.6546 -4.2016 -2.8572 37 1 2.2318 3.4594 4.3455 38 1 2.0073 4.1460 2.7190 39 1 -0.4490 3.9887 2.9843 40 1 0.2653 4.9607 4.2943 41 1 0.2183 3.0043 5.7969 42 1 -2.5555 3.5058 4.4841 43 1 -3.0973 4.0704 6.7423 44 1 -1.3397 3.6916 7.2587 45 1 -1.0964 1.5801 3.4372 46 1 -0.8275 0.8952 5.0587 47 1 0.9388 0.1711 3.4664 48 1 1.6157 1.1677 4.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262952180.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:06 Heat of formation + Delta-G solvation = 96.536558 kcal Electronic energy + Delta-G solvation = -26864.949378 eV Core-core repulsion = 23342.227210 eV Total energy + Delta-G solvation = -3522.722168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07120 -40.27011 -37.24514 -36.59526 -35.81776 -34.04918 -33.57033 -32.24637 -31.97231 -30.10288 -27.85531 -27.27228 -25.59733 -24.21837 -23.45746 -22.42255 -22.00134 -20.79921 -20.66871 -20.55618 -19.11718 -18.45180 -17.51543 -17.30615 -16.38295 -16.15292 -16.02524 -15.77788 -15.32123 -15.28379 -15.03924 -14.79124 -14.71105 -14.53930 -14.41831 -13.86647 -13.54754 -13.35060 -13.29867 -13.01186 -12.78861 -12.70667 -12.51256 -12.26170 -12.22639 -12.02958 -11.89143 -11.79493 -11.70983 -11.52211 -11.42966 -11.29800 -11.11316 -10.79662 -10.50848 -10.14242 -10.02816 -9.89226 -8.32277 -6.35690 0.63380 0.95667 1.28159 1.33505 1.43897 1.46668 1.55871 1.71199 2.31249 2.66718 3.02850 3.40620 3.62326 3.71049 3.76315 3.83391 3.89957 4.00559 4.13481 4.18406 4.19401 4.31790 4.35270 4.47917 4.51169 4.54183 4.57557 4.67041 4.70537 4.76474 4.78239 4.87061 4.90153 4.92808 4.97691 5.06368 5.15699 5.19327 5.25024 5.38861 5.42547 5.48248 5.60087 5.62587 5.70842 5.72260 5.81553 5.97065 6.20530 6.22489 6.71024 7.28646 7.65359 8.83723 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.003147 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.307996 B = 8894.827045 C = 9242.360670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.206 4.206 3 C 0.140 3.860 4 N -0.456 5.456 5 C 0.200 3.800 6 C -0.011 4.011 7 C 0.007 3.993 8 C -0.525 4.525 9 H 0.049 0.951 10 C 0.016 3.984 11 N -0.942 5.942 12 Si 0.937 3.063 13 H -0.261 1.261 14 H -0.282 1.282 15 H -0.265 1.265 16 N -0.331 5.331 17 N -0.349 5.349 18 C 0.344 3.656 19 N -0.446 5.446 20 C 0.066 3.934 21 C -0.094 4.094 22 C -0.063 4.063 23 C -0.146 4.146 24 C -0.196 4.196 25 C -0.094 4.094 26 C 0.069 3.931 27 H 0.126 0.874 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.019 0.981 35 H 0.006 0.994 36 H 0.267 0.733 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.490 15.003 12.721 30.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.225 4.225 3 C 0.019 3.981 4 N -0.147 5.147 5 C -0.069 4.069 6 C -0.051 4.051 7 C -0.031 4.031 8 C -0.563 4.563 9 H 0.067 0.933 10 C -0.182 4.182 11 N -0.582 5.582 12 Si 0.761 3.239 13 H -0.185 1.185 14 H -0.207 1.207 15 H -0.189 1.189 16 N -0.171 5.171 17 N -0.192 5.192 18 C -0.013 4.013 19 N -0.173 5.173 20 C -0.060 4.060 21 C -0.132 4.132 22 C -0.081 4.081 23 C -0.164 4.164 24 C -0.233 4.233 25 C -0.132 4.132 26 C -0.058 4.058 27 H 0.144 0.856 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.037 0.963 35 H 0.024 0.976 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.138 0.862 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -22.814 14.932 13.391 30.377 hybrid contribution 0.215 -1.178 -0.252 1.224 sum -22.600 13.753 13.139 29.539 Atomic orbital electron populations 1.24100 0.94333 1.03773 0.94455 1.22952 0.97271 0.97027 1.05226 1.21196 0.91692 0.98381 0.86797 1.46560 1.09586 1.48541 1.10033 1.25291 0.82806 1.00941 0.97868 1.19979 0.98380 0.96651 0.90095 1.19366 0.96252 0.91924 0.95596 1.21286 1.31415 0.92820 1.10749 0.93285 1.25774 0.95710 1.00481 0.96215 1.70020 1.42905 1.15989 1.29304 0.85862 0.79423 0.78549 0.80053 1.18532 1.20748 1.18919 1.73960 1.24269 1.18633 1.00253 1.74427 0.97835 1.20229 1.26717 1.22568 0.93109 1.02395 0.83267 1.58854 1.15871 1.04362 1.38198 1.22213 0.99250 0.86257 0.98329 1.21567 0.93352 0.98816 0.99462 1.20409 0.94706 0.94651 0.98361 1.22895 0.96419 0.99249 0.97843 1.24005 1.01948 1.00679 0.96625 1.21557 0.93631 0.96288 1.01678 1.22158 0.97133 0.94409 0.92135 0.85584 0.87118 0.89527 0.85538 0.87278 0.89354 0.88593 0.96304 0.97553 0.92353 0.94520 0.90805 0.89629 0.89571 0.91586 0.86172 0.87475 0.88898 0.89592 0.89952 0.91770 0.94750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 14.32 67.78 0.97 -1.23 16 2 C -0.21 -4.92 9.85 25.65 0.25 -4.67 16 3 C 0.14 3.27 6.50 85.63 0.56 3.82 16 4 N -0.46 -14.24 2.79 -518.91 -1.45 -15.69 16 5 C 0.20 7.62 7.32 137.64 1.01 8.63 16 6 C -0.01 -0.45 5.52 29.85 0.16 -0.28 16 7 C 0.01 0.34 4.02 29.85 0.12 0.46 16 8 C -0.52 -29.42 9.66 25.60 0.25 -29.17 16 9 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 10 C 0.02 0.93 5.47 84.65 0.46 1.40 16 11 N -0.94 -57.94 13.96 21.45 0.30 -57.64 16 12 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 14 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 15 H -0.26 -12.56 6.53 99.48 0.65 -11.91 16 16 N -0.33 -14.14 12.18 -49.54 -0.60 -14.74 16 17 N -0.35 -13.53 12.18 -58.00 -0.71 -14.23 16 18 C 0.34 10.77 6.42 260.11 1.67 12.44 16 19 N -0.45 -10.16 4.67 -706.15 -3.30 -13.46 16 20 C 0.07 1.29 5.36 86.33 0.46 1.75 16 21 C -0.09 -1.18 5.36 30.64 0.16 -1.01 16 22 C -0.06 -0.78 2.54 -11.46 -0.03 -0.81 16 23 C -0.15 -1.48 8.78 25.65 0.23 -1.25 16 24 C -0.20 -1.95 14.32 67.78 0.97 -0.98 16 25 C -0.09 -1.28 5.36 30.65 0.16 -1.12 16 26 C 0.07 1.46 5.40 86.32 0.47 1.92 16 27 H 0.13 1.51 7.84 -2.91 -0.02 1.48 16 28 H 0.11 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.09 2.64 7.28 -2.91 -0.02 2.62 16 30 H 0.13 2.21 7.79 -2.39 -0.02 2.19 16 31 H 0.11 2.45 7.10 -2.39 -0.02 2.43 16 32 H 0.09 3.57 8.14 -2.38 -0.02 3.55 16 33 H 0.10 3.34 7.17 -2.39 -0.02 3.32 16 34 H 0.02 0.85 6.80 -2.39 -0.02 0.84 16 35 H 0.01 0.31 7.18 -2.39 -0.02 0.29 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 42 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.11 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.09 0.96 7.84 -2.91 -0.02 0.94 16 45 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.47 390.67 4.86 -66.62 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.85 Total: 12.55 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 7.88 Total: -10.10 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -5.76 Total: -115.77 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -71.47 4.86 -66.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262952180.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.152 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds