Wall clock time and date at job start Tue Mar 31 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99794 * 2 1 4 4 N 1.46507 * 109.47114 * 123.84954 * 3 2 1 5 5 C 1.36739 * 127.13675 * 274.54028 * 4 3 2 6 6 C 1.50698 * 126.34660 * 0.02828 * 5 4 3 7 7 H 1.08994 * 115.55111 * 334.67165 * 6 5 4 8 8 C 1.53004 * 117.49565 * 189.00182 * 6 5 4 9 9 C 1.53003 * 117.49349 * 120.34183 * 6 5 4 10 10 H 1.08993 * 117.49907 * 214.99867 * 9 6 5 11 11 C 1.52999 * 117.50244 * 0.02562 * 9 6 5 12 12 N 1.30293 * 107.30016 * 180.22559 * 5 4 3 13 13 N 1.28528 * 110.05996 * 359.77132 * 12 5 4 14 14 C 1.31217 * 109.85608 * 0.02562 * 13 12 5 15 15 N 1.38576 * 126.47074 * 179.97438 * 14 13 12 16 16 C 1.46849 * 111.00424 * 98.56618 * 15 14 13 17 17 C 1.53040 * 109.52276 * 174.15979 * 16 15 14 18 18 C 1.53119 * 109.27992 * 59.17723 * 17 16 15 19 19 C 1.53112 * 109.16175 * 302.34539 * 18 17 16 20 20 H 1.09004 * 109.53859 * 297.69238 * 19 18 17 21 21 C 1.50702 * 109.50446 * 177.59200 * 19 18 17 22 22 H 1.07995 * 120.00526 * 246.79141 * 21 19 18 23 23 C 1.37883 * 119.99591 * 66.79191 * 21 19 18 24 24 N 1.31512 * 119.99703 * 195.62837 * 23 21 19 25 25 Si 1.86795 * 120.00032 * 15.62626 * 23 21 19 26 26 H 1.48505 * 109.47059 * 179.97438 * 25 23 21 27 27 H 1.48502 * 109.47096 * 60.00338 * 25 23 21 28 28 H 1.48491 * 109.47664 * 300.00211 * 25 23 21 29 29 C 1.46852 * 110.99955 * 334.35332 * 15 14 13 30 30 H 1.07995 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99987 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99736 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47412 * 3.85263 * 3 2 1 34 34 H 1.08995 * 109.47421 * 243.84910 * 3 2 1 35 35 H 1.09001 * 117.50071 * 359.97438 * 8 6 5 36 36 H 1.08997 * 117.49681 * 145.02796 * 8 6 5 37 37 H 1.09000 * 109.47198 * 59.99275 * 11 9 6 38 38 H 1.08998 * 109.47476 * 179.97438 * 11 9 6 39 39 H 1.09005 * 109.46640 * 299.99881 * 11 9 6 40 40 H 1.08995 * 109.46000 * 294.17584 * 16 15 14 41 41 H 1.08997 * 109.46367 * 54.15523 * 16 15 14 42 42 H 1.08994 * 109.49746 * 179.11872 * 17 16 15 43 43 H 1.09005 * 109.50180 * 299.19513 * 17 16 15 44 44 H 1.08995 * 109.52113 * 182.43356 * 18 17 16 45 45 H 1.09003 * 109.51872 * 62.25307 * 18 17 16 46 46 H 0.96999 * 120.00437 * 354.91754 * 24 23 21 47 47 H 1.08991 * 109.46208 * 65.82835 * 29 15 14 48 48 H 1.09001 * 109.45074 * 305.85246 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9739 1.3434 1.1472 5 6 2.6786 1.7377 2.4227 6 6 1.3407 2.2199 2.9213 7 1 0.6872 2.6567 2.1662 8 6 1.2834 2.8098 4.3319 9 6 0.6823 1.4296 4.0539 10 1 -0.4044 1.3465 4.0440 11 6 1.4327 0.2106 4.5940 12 7 3.7694 1.6231 3.1261 13 7 4.7252 1.1821 2.3886 14 6 4.2919 0.9906 1.1649 15 7 5.0341 0.5231 0.0920 16 6 4.8114 -0.9135 -0.1159 17 6 5.5289 -1.3630 -1.3907 18 6 7.0266 -1.0738 -1.2566 19 6 7.2282 0.4208 -0.9926 20 1 6.8546 0.9945 -1.8408 21 6 8.6957 0.7044 -0.8005 22 1 9.0621 1.0253 0.1634 23 6 9.5707 0.5541 -1.8555 24 7 10.8656 0.4972 -1.6328 25 14 8.9169 0.4314 -3.6009 26 1 10.0525 0.2764 -4.5452 27 1 8.1614 1.6657 -3.9345 28 1 8.0170 -0.7446 -3.7110 29 6 6.4614 0.8187 0.2707 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3571 2.1325 0.0690 34 1 2.6373 1.3934 -0.9224 35 1 2.2132 2.8486 4.8995 36 1 0.5917 3.6342 4.5049 37 1 2.4003 0.5238 4.9860 38 1 0.8502 -0.2509 5.3913 39 1 1.5825 -0.5095 3.7895 40 1 5.2029 -1.4687 0.7364 41 1 3.7428 -1.1048 -0.2141 42 1 5.3764 -2.4324 -1.5362 43 1 5.1277 -0.8185 -2.2455 44 1 7.5354 -1.3527 -2.1792 45 1 7.4356 -1.6490 -0.4259 46 1 11.2101 0.6345 -0.7365 47 1 6.8452 0.2553 1.1211 48 1 6.5910 1.8855 0.4534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262953501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:37 Heat of formation + Delta-G solvation = 127.166801 kcal Electronic energy + Delta-G solvation = -27466.857443 eV Core-core repulsion = 23945.463502 eV Total energy + Delta-G solvation = -3521.393941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.87110 -38.69546 -37.83770 -36.32585 -33.94571 -32.83459 -32.18236 -30.33480 -29.37896 -28.38702 -26.98590 -24.82575 -24.12578 -23.87029 -21.63242 -21.21967 -21.04584 -20.19507 -19.64007 -18.69021 -17.68548 -17.20313 -16.49099 -16.09475 -15.61563 -15.12639 -14.80308 -14.35786 -14.25985 -13.94717 -13.54568 -13.34115 -13.17924 -12.95243 -12.80764 -12.56187 -12.48011 -12.10319 -12.04592 -11.93122 -11.71924 -11.42957 -11.30929 -10.81789 -10.78150 -10.58861 -10.42689 -10.27083 -10.20968 -10.11208 -9.95483 -9.90612 -9.69403 -9.40637 -9.06303 -8.73154 -8.21635 -8.03148 -6.43532 -4.04952 1.59857 1.82800 2.49609 2.92901 3.37321 3.44284 3.61915 3.65197 3.97388 4.16115 4.35832 4.42566 4.50317 4.51032 4.56224 4.74530 4.86250 5.11089 5.12668 5.18041 5.26603 5.29783 5.37695 5.45015 5.54040 5.57786 5.63722 5.66482 5.74394 5.79504 5.88047 5.96678 6.02517 6.09092 6.13733 6.17802 6.20678 6.24241 6.28368 6.40733 6.60819 6.67787 6.76227 6.91385 7.10067 7.27297 7.52255 7.59070 8.14481 8.40745 8.92594 8.96611 9.64210 10.97263 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.003627 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.285736 B = 7718.613249 C = 8426.744559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.175 4.175 3 C 0.139 3.861 4 N -0.470 5.470 5 C 0.202 3.798 6 C -0.079 4.079 7 H 0.117 0.883 8 C -0.148 4.148 9 C -0.129 4.129 10 H 0.110 0.890 11 C -0.123 4.123 12 N -0.283 5.283 13 N -0.316 5.316 14 C 0.368 3.632 15 N -0.464 5.464 16 C 0.069 3.931 17 C -0.119 4.119 18 C -0.129 4.129 19 C 0.028 3.972 20 H 0.030 0.970 21 C -0.596 4.596 22 H 0.056 0.944 23 C 0.031 3.969 24 N -0.909 5.909 25 Si 1.049 2.951 26 H -0.288 1.288 27 H -0.284 1.284 28 H -0.272 1.272 29 C 0.093 3.907 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.268 0.732 47 H 0.047 0.953 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.986 -0.453 4.671 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.194 4.194 3 C 0.017 3.983 4 N -0.163 5.163 5 C -0.065 4.065 6 C -0.099 4.099 7 H 0.135 0.865 8 C -0.186 4.186 9 C -0.149 4.149 10 H 0.128 0.872 11 C -0.180 4.180 12 N -0.123 5.123 13 N -0.160 5.160 14 C 0.012 3.988 15 N -0.190 5.190 16 C -0.058 4.058 17 C -0.156 4.156 18 C -0.166 4.166 19 C 0.008 3.992 20 H 0.048 0.952 21 C -0.634 4.634 22 H 0.075 0.925 23 C -0.174 4.174 24 N -0.543 5.543 25 Si 0.878 3.122 26 H -0.214 1.214 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.032 4.032 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.660 -0.404 3.825 24.958 hybrid contribution -1.092 -0.112 0.943 1.447 sum -25.752 -0.516 4.767 26.195 Atomic orbital electron populations 1.23897 0.95384 1.02416 0.98328 1.23155 0.96313 0.98214 1.01719 1.20911 0.92270 0.96697 0.88470 1.46148 1.09841 1.50141 1.10216 1.23446 0.97287 1.04383 0.81354 1.20103 0.90839 1.06088 0.92895 0.86494 1.23218 1.03584 0.96164 0.95618 1.22449 0.98910 0.93609 0.99935 0.87236 1.21362 1.00601 0.95770 1.00316 1.73913 0.95807 1.16790 1.25747 1.74740 1.22469 1.19858 0.98906 1.22762 0.82773 1.01350 0.91913 1.58901 1.11508 1.16193 1.32368 1.22183 0.99626 0.84908 0.99110 1.21706 0.98200 0.99675 0.96061 1.22192 0.92204 1.00146 1.02092 1.19066 0.95823 0.91635 0.92675 0.95237 1.21930 0.91190 1.51208 0.99115 0.92534 1.25759 0.94298 0.93145 1.04188 1.70844 1.13469 1.44624 1.25356 0.84001 0.75395 0.77226 0.75617 1.21386 1.21009 1.19912 1.22189 0.79828 1.01066 1.00112 0.88172 0.87724 0.86699 0.88787 0.86995 0.87129 0.88064 0.91021 0.92253 0.92958 0.93879 0.91880 0.92043 0.91621 0.91486 0.92763 0.92232 0.93431 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 14.32 29.01 0.42 -0.66 16 2 C -0.18 -1.55 9.61 -36.03 -0.35 -1.89 16 3 C 0.14 1.42 6.42 -5.19 -0.03 1.39 16 4 N -0.47 -6.67 2.79 -115.37 -0.32 -6.99 16 5 C 0.20 2.88 6.73 -154.02 -1.04 1.84 16 6 C -0.08 -0.78 6.01 -91.77 -0.55 -1.34 16 7 H 0.12 0.90 7.65 -51.93 -0.40 0.50 16 8 C -0.15 -1.32 9.80 -26.69 -0.26 -1.59 16 9 C -0.13 -1.12 6.41 -90.58 -0.58 -1.70 16 10 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 11 C -0.12 -1.27 9.13 37.16 0.34 -0.93 16 12 N -0.28 -5.03 10.94 32.99 0.36 -4.67 16 13 N -0.32 -6.34 11.52 30.31 0.35 -5.99 16 14 C 0.37 6.57 6.83 -318.88 -2.18 4.39 16 15 N -0.46 -8.45 4.65 -174.55 -0.81 -9.27 16 16 C 0.07 1.10 5.40 -3.83 -0.02 1.08 16 17 C -0.12 -1.94 6.09 -26.65 -0.16 -2.11 16 18 C -0.13 -2.69 4.97 -26.61 -0.13 -2.82 16 19 C 0.03 0.65 1.84 -91.69 -0.17 0.48 16 20 H 0.03 0.70 6.77 -51.93 -0.35 0.35 16 21 C -0.60 -16.70 8.83 -34.44 -0.30 -17.01 16 22 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 23 C 0.03 0.88 5.37 -17.82 -0.10 0.79 16 24 N -0.91 -27.96 13.70 55.43 0.76 -27.20 16 25 Si 1.05 24.91 26.37 -169.99 -4.48 20.43 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 28 H -0.27 -5.86 5.51 56.52 0.31 -5.54 16 29 C 0.09 2.04 4.19 -3.83 -0.02 2.02 16 30 H 0.10 0.52 7.84 -52.49 -0.41 0.11 16 31 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.12 1.13 6.35 -52.48 -0.33 0.80 16 33 H 0.09 0.73 7.25 -51.93 -0.38 0.36 16 34 H 0.11 1.20 8.12 -51.93 -0.42 0.78 16 35 H 0.11 1.20 7.83 -51.93 -0.41 0.79 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.89 7.21 -51.93 -0.37 0.52 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.85 6.11 -51.93 -0.32 0.54 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.46 4.77 -51.93 -0.25 1.21 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.27 8.25 8.73 -40.82 -0.36 7.89 16 47 H 0.05 1.11 8.07 -51.93 -0.42 0.69 16 48 H 0.07 1.63 8.10 -51.93 -0.42 1.21 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -32.53 377.63 -11.53 -44.06 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.94 Total: 1.98 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -5.13 Total: -18.04 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.34 Total: -54.12 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.48 Total: 20.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.53 -11.53 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.227 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds