Wall clock time and date at job start Tue Mar 31 2020 11:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99794 * 2 1 4 4 N 1.46507 * 109.47114 * 123.84954 * 3 2 1 5 5 C 1.36739 * 127.13675 * 274.54028 * 4 3 2 6 6 C 1.50698 * 126.34660 * 0.02828 * 5 4 3 7 7 H 1.08994 * 115.55111 * 334.67165 * 6 5 4 8 8 C 1.53004 * 117.49565 * 189.00182 * 6 5 4 9 9 C 1.53003 * 117.49349 * 120.34183 * 6 5 4 10 10 H 1.08993 * 117.49907 * 214.99867 * 9 6 5 11 11 C 1.52999 * 117.50244 * 0.02562 * 9 6 5 12 12 N 1.30293 * 107.30016 * 180.22559 * 5 4 3 13 13 N 1.28528 * 110.05996 * 359.77132 * 12 5 4 14 14 C 1.31217 * 109.85608 * 0.02562 * 13 12 5 15 15 N 1.38576 * 126.47074 * 179.97438 * 14 13 12 16 16 C 1.46849 * 111.00424 * 98.56618 * 15 14 13 17 17 C 1.53040 * 109.52276 * 174.15979 * 16 15 14 18 18 C 1.53119 * 109.27992 * 59.17723 * 17 16 15 19 19 C 1.53112 * 109.16175 * 302.34539 * 18 17 16 20 20 H 1.09004 * 109.53859 * 297.69238 * 19 18 17 21 21 C 1.50702 * 109.50446 * 177.59200 * 19 18 17 22 22 H 1.07995 * 120.00526 * 246.79141 * 21 19 18 23 23 C 1.37883 * 119.99591 * 66.79191 * 21 19 18 24 24 N 1.31512 * 119.99703 * 195.62837 * 23 21 19 25 25 Si 1.86795 * 120.00032 * 15.62626 * 23 21 19 26 26 H 1.48505 * 109.47059 * 179.97438 * 25 23 21 27 27 H 1.48502 * 109.47096 * 60.00338 * 25 23 21 28 28 H 1.48491 * 109.47664 * 300.00211 * 25 23 21 29 29 C 1.46852 * 110.99955 * 334.35332 * 15 14 13 30 30 H 1.07995 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99987 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99736 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47412 * 3.85263 * 3 2 1 34 34 H 1.08995 * 109.47421 * 243.84910 * 3 2 1 35 35 H 1.09001 * 117.50071 * 359.97438 * 8 6 5 36 36 H 1.08997 * 117.49681 * 145.02796 * 8 6 5 37 37 H 1.09000 * 109.47198 * 59.99275 * 11 9 6 38 38 H 1.08998 * 109.47476 * 179.97438 * 11 9 6 39 39 H 1.09005 * 109.46640 * 299.99881 * 11 9 6 40 40 H 1.08995 * 109.46000 * 294.17584 * 16 15 14 41 41 H 1.08997 * 109.46367 * 54.15523 * 16 15 14 42 42 H 1.08994 * 109.49746 * 179.11872 * 17 16 15 43 43 H 1.09005 * 109.50180 * 299.19513 * 17 16 15 44 44 H 1.08995 * 109.52113 * 182.43356 * 18 17 16 45 45 H 1.09003 * 109.51872 * 62.25307 * 18 17 16 46 46 H 0.96999 * 120.00437 * 354.91754 * 24 23 21 47 47 H 1.08991 * 109.46208 * 65.82835 * 29 15 14 48 48 H 1.09001 * 109.45074 * 305.85246 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9739 1.3434 1.1472 5 6 2.6786 1.7377 2.4227 6 6 1.3407 2.2199 2.9213 7 1 0.6872 2.6567 2.1662 8 6 1.2834 2.8098 4.3319 9 6 0.6823 1.4296 4.0539 10 1 -0.4044 1.3465 4.0440 11 6 1.4327 0.2106 4.5940 12 7 3.7694 1.6231 3.1261 13 7 4.7252 1.1821 2.3886 14 6 4.2919 0.9906 1.1649 15 7 5.0341 0.5231 0.0920 16 6 4.8114 -0.9135 -0.1159 17 6 5.5289 -1.3630 -1.3907 18 6 7.0266 -1.0738 -1.2566 19 6 7.2282 0.4208 -0.9926 20 1 6.8546 0.9945 -1.8408 21 6 8.6957 0.7044 -0.8005 22 1 9.0621 1.0253 0.1634 23 6 9.5707 0.5541 -1.8555 24 7 10.8656 0.4972 -1.6328 25 14 8.9169 0.4314 -3.6009 26 1 10.0525 0.2764 -4.5452 27 1 8.1614 1.6657 -3.9345 28 1 8.0170 -0.7446 -3.7110 29 6 6.4614 0.8187 0.2707 30 1 -0.5400 0.9352 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3571 2.1325 0.0690 34 1 2.6373 1.3934 -0.9224 35 1 2.2132 2.8486 4.8995 36 1 0.5917 3.6342 4.5049 37 1 2.4003 0.5238 4.9860 38 1 0.8502 -0.2509 5.3913 39 1 1.5825 -0.5095 3.7895 40 1 5.2029 -1.4687 0.7364 41 1 3.7428 -1.1048 -0.2141 42 1 5.3764 -2.4324 -1.5362 43 1 5.1277 -0.8185 -2.2455 44 1 7.5354 -1.3527 -2.1792 45 1 7.4356 -1.6490 -0.4259 46 1 11.2101 0.6345 -0.7365 47 1 6.8452 0.2553 1.1211 48 1 6.5910 1.8855 0.4534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262953501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:36 Heat of formation + Delta-G solvation = 109.274740 kcal Electronic energy + Delta-G solvation = -27467.633301 eV Core-core repulsion = 23945.463502 eV Total energy + Delta-G solvation = -3522.169799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.09301 -40.17542 -38.68961 -37.20553 -35.75494 -34.06633 -33.63512 -32.11917 -30.53511 -29.33602 -27.82625 -26.75977 -25.65055 -24.90681 -23.05588 -22.43473 -21.95760 -21.21431 -20.54971 -20.26529 -19.73153 -18.35267 -17.65361 -17.23658 -16.55937 -16.23629 -16.12955 -15.60425 -15.44315 -15.30750 -15.02321 -14.63204 -14.43554 -14.13672 -14.12184 -14.04274 -13.67856 -13.30407 -13.16819 -12.91538 -12.69977 -12.57608 -12.48299 -12.34922 -12.27832 -11.91167 -11.81858 -11.70577 -11.61362 -11.41303 -11.20500 -11.09413 -11.02078 -10.78670 -10.52122 -10.41102 -10.33612 -9.43453 -8.77175 -6.39237 0.63788 0.89966 1.46526 1.55267 1.56672 1.69390 1.75846 2.51086 2.66714 2.87344 3.07297 3.27051 3.57055 3.69768 3.77132 3.80399 3.83258 3.94795 4.01645 4.03885 4.22609 4.25330 4.32863 4.36902 4.45664 4.51164 4.55516 4.64466 4.69651 4.81038 4.82960 4.86191 4.88882 4.91511 4.98337 5.00542 5.08407 5.11416 5.16516 5.19734 5.41585 5.43021 5.55985 5.57476 5.61073 5.68461 5.71408 6.00098 6.09562 6.21854 6.53481 7.40287 7.70363 8.62531 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.003627 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.285736 B = 7718.613249 C = 8426.744559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.203 4.203 3 C 0.133 3.867 4 N -0.461 5.461 5 C 0.222 3.778 6 C -0.092 4.092 7 H 0.154 0.846 8 C -0.147 4.147 9 C -0.113 4.113 10 H 0.149 0.851 11 C -0.124 4.124 12 N -0.325 5.325 13 N -0.367 5.367 14 C 0.350 3.650 15 N -0.453 5.453 16 C 0.069 3.931 17 C -0.108 4.108 18 C -0.126 4.126 19 C 0.030 3.970 20 H 0.038 0.962 21 C -0.604 4.604 22 H 0.007 0.993 23 C -0.020 4.020 24 N -0.941 5.941 25 Si 1.088 2.912 26 H -0.292 1.292 27 H -0.265 1.265 28 H -0.229 1.229 29 C 0.113 3.887 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.024 0.976 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.248 0.752 47 H 0.017 0.983 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.938 -0.812 2.635 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.222 4.222 3 C 0.012 3.988 4 N -0.154 5.154 5 C -0.047 4.047 6 C -0.112 4.112 7 H 0.171 0.829 8 C -0.185 4.185 9 C -0.132 4.132 10 H 0.166 0.834 11 C -0.181 4.181 12 N -0.164 5.164 13 N -0.211 5.211 14 C -0.008 4.008 15 N -0.178 5.178 16 C -0.058 4.058 17 C -0.145 4.145 18 C -0.163 4.163 19 C 0.011 3.989 20 H 0.056 0.944 21 C -0.643 4.643 22 H 0.025 0.975 23 C -0.217 4.217 24 N -0.577 5.577 25 Si 0.908 3.092 26 H -0.219 1.219 27 H -0.190 1.190 28 H -0.153 1.153 29 C -0.014 4.014 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.152 0.848 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.035 0.965 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -30.658 -0.770 1.815 30.722 hybrid contribution 0.675 0.048 1.771 1.896 sum -29.983 -0.723 3.586 30.205 Atomic orbital electron populations 1.24178 0.94429 1.04102 0.94164 1.22932 0.97038 0.96751 1.05467 1.21285 0.92073 0.98907 0.86522 1.46374 1.08764 1.48902 1.11325 1.24332 0.97987 1.01412 0.80921 1.20521 0.89100 1.07369 0.94250 0.82885 1.23277 1.03181 0.97678 0.94339 1.22564 1.00403 0.92241 0.97998 0.83383 1.21341 0.99777 0.96575 1.00433 1.73832 0.96866 1.18995 1.26660 1.74610 1.24576 1.21391 1.00510 1.22655 0.84449 1.02391 0.91290 1.58851 1.08850 1.17612 1.32482 1.22306 1.01680 0.83314 0.98469 1.21667 0.94123 1.02223 0.96528 1.22033 0.96004 0.97259 1.01052 1.18974 0.92685 0.93927 0.93357 0.94367 1.22166 0.94426 1.50605 0.97064 0.97478 1.27391 0.93628 0.91989 1.08738 1.70990 1.15022 1.47517 1.24121 0.83575 0.75801 0.79802 0.69993 1.21850 1.18976 1.15269 1.21686 0.82612 0.98864 0.98279 0.85875 0.86532 0.88177 0.85661 0.87675 0.90018 0.84777 0.94189 0.90193 0.94542 0.95723 0.88414 0.88565 0.89735 0.91713 0.94740 0.94258 0.96483 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 14.32 67.78 0.97 -0.07 16 2 C -0.20 -2.83 9.61 25.65 0.25 -2.58 16 3 C 0.13 2.28 6.42 85.63 0.55 2.83 16 4 N -0.46 -12.53 2.79 -518.91 -1.45 -13.98 16 5 C 0.22 6.11 6.73 137.64 0.93 7.04 16 6 C -0.09 -1.53 6.01 -11.54 -0.07 -1.59 16 7 H 0.15 1.46 7.65 -2.39 -0.02 1.44 16 8 C -0.15 -2.24 9.80 30.62 0.30 -1.94 16 9 C -0.11 -1.53 6.41 -10.76 -0.07 -1.60 16 10 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 11 C -0.12 -2.40 9.13 71.98 0.66 -1.74 16 12 N -0.32 -12.04 10.94 -49.54 -0.54 -12.59 16 13 N -0.37 -15.66 11.52 -58.01 -0.67 -16.33 16 14 C 0.35 12.76 6.83 260.11 1.78 14.54 16 15 N -0.45 -16.65 4.65 -706.14 -3.29 -19.94 16 16 C 0.07 2.13 5.40 86.33 0.47 2.60 16 17 C -0.11 -3.22 6.09 30.65 0.19 -3.04 16 18 C -0.13 -5.17 4.97 30.67 0.15 -5.02 16 19 C 0.03 1.44 1.84 -11.49 -0.02 1.42 16 20 H 0.04 1.78 6.77 -2.38 -0.02 1.77 16 21 C -0.60 -35.87 8.83 25.60 0.23 -35.64 16 22 H 0.01 0.46 7.99 -2.91 -0.02 0.44 16 23 C -0.02 -1.21 5.37 84.66 0.45 -0.76 16 24 N -0.94 -60.73 13.70 21.45 0.29 -60.43 16 25 Si 1.09 49.43 26.37 68.60 1.81 51.24 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.23 -8.79 5.51 99.48 0.55 -8.24 16 29 C 0.11 5.21 4.19 86.33 0.36 5.57 16 30 H 0.12 0.45 7.84 -2.91 -0.02 0.42 16 31 H 0.12 0.70 8.06 -2.91 -0.02 0.68 16 32 H 0.10 1.68 6.35 -2.91 -0.02 1.66 16 33 H 0.13 1.33 7.25 -2.39 -0.02 1.32 16 34 H 0.11 1.96 8.12 -2.39 -0.02 1.94 16 35 H 0.08 1.77 7.83 -2.39 -0.02 1.75 16 36 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.04 1.02 7.21 -2.39 -0.02 1.01 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 2.41 6.11 -2.39 -0.01 2.39 16 42 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.06 2.68 4.77 -2.39 -0.01 2.67 16 45 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 47 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 48 H 0.04 2.24 8.10 -2.39 -0.02 2.22 16 Total: -1.00 -80.34 377.63 4.01 -76.33 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.74 Total: 15.67 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 7.11 Total: -19.98 kcal Atomic # 7 Polarization: -117.61 SS G_CDS: -5.65 Total: -123.26 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.81 Total: 51.24 kcal Total: -80.34 4.01 -76.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.606 kcal (2) G-P(sol) polarization free energy of solvation -80.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds