Wall clock time and date at job start Tue Mar 31 2020 11:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00283 * 2 1 4 4 N 1.46500 * 109.47268 * 124.99747 * 3 2 1 5 5 C 1.36742 * 127.13584 * 270.70624 * 4 3 2 6 6 C 1.50692 * 126.35106 * 359.97438 * 5 4 3 7 7 H 1.08998 * 115.54877 * 334.33942 * 6 5 4 8 8 C 1.53000 * 117.50102 * 188.62145 * 6 5 4 9 9 C 1.53000 * 117.49856 * 119.99775 * 6 5 4 10 10 H 1.09005 * 117.49671 * 0.02562 * 9 6 5 11 11 C 1.53002 * 117.50360 * 215.00463 * 9 6 5 12 12 N 1.30299 * 107.30228 * 180.02562 * 5 4 3 13 13 N 1.28532 * 110.05693 * 359.72846 * 12 5 4 14 14 C 1.31226 * 109.85292 * 0.44957 * 13 12 5 15 15 N 1.38575 * 126.46721 * 179.82197 * 14 13 12 16 16 C 1.46846 * 111.00324 * 296.83444 * 15 14 13 17 17 C 1.53042 * 109.52495 * 185.84271 * 16 15 14 18 18 C 1.53121 * 109.27612 * 300.81483 * 17 16 15 19 19 C 1.53120 * 109.21147 * 57.62344 * 18 17 16 20 20 H 1.09005 * 109.50410 * 62.31970 * 19 18 17 21 21 C 1.50694 * 109.50302 * 182.43344 * 19 18 17 22 22 H 1.08006 * 119.99487 * 120.00069 * 21 19 18 23 23 C 1.37877 * 120.00375 * 300.00124 * 21 19 18 24 24 N 1.31509 * 119.99606 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99894 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46889 * 90.00345 * 25 23 21 27 27 H 1.48506 * 109.46764 * 210.00086 * 25 23 21 28 28 H 1.48491 * 109.47334 * 329.99897 * 25 23 21 29 29 C 1.46849 * 111.00092 * 61.04143 * 15 14 13 30 30 H 1.08007 * 119.99627 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00395 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99939 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47202 * 4.99972 * 3 2 1 34 34 H 1.09000 * 109.47317 * 245.00093 * 3 2 1 35 35 H 1.08997 * 117.49766 * 0.02562 * 8 6 5 36 36 H 1.09002 * 117.49353 * 145.02037 * 8 6 5 37 37 H 1.09000 * 109.46279 * 60.00376 * 11 9 6 38 38 H 1.08998 * 109.47303 * 180.02562 * 11 9 6 39 39 H 1.09001 * 109.46799 * 300.00399 * 11 9 6 40 40 H 1.08998 * 109.46865 * 65.82143 * 16 15 14 41 41 H 1.09006 * 109.45653 * 305.85260 * 16 15 14 42 42 H 1.09003 * 109.49946 * 180.87999 * 17 16 15 43 43 H 1.08995 * 109.50687 * 60.75492 * 17 16 15 44 44 H 1.08998 * 109.52536 * 177.55833 * 18 17 16 45 45 H 1.09002 * 109.52220 * 297.68886 * 18 17 16 46 46 H 0.97002 * 119.99896 * 179.97438 * 24 23 21 47 47 H 1.08999 * 109.46576 * 294.17592 * 29 15 14 48 48 H 1.08999 * 109.46003 * 54.15586 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7406 1.7812 2.3979 6 6 1.4385 2.3494 2.9004 7 1 0.7991 2.8014 2.1421 8 6 1.4333 2.9775 4.2955 9 6 0.7538 1.6266 4.0621 10 1 1.2455 0.7403 4.4633 11 6 -0.7758 1.5938 4.0708 12 7 3.8343 1.6281 3.0893 13 7 4.7524 1.1112 2.3532 14 6 4.2927 0.9141 1.1400 15 7 4.9925 0.3776 0.0710 16 6 6.1272 1.2336 -0.2980 17 6 6.7869 0.6893 -1.5672 18 6 7.2654 -0.7430 -1.3137 19 6 6.0743 -1.6034 -0.8832 20 1 5.3400 -1.6373 -1.6881 21 6 6.5481 -3.0001 -0.5743 22 1 6.4048 -3.4129 0.4134 23 6 7.1645 -3.7512 -1.5525 24 7 7.3386 -3.2487 -2.7553 25 14 7.7525 -5.4823 -1.1693 26 1 6.6647 -6.4503 -1.4605 27 1 8.9358 -5.8002 -2.0084 28 1 8.1245 -5.5725 0.2654 29 6 5.4342 -0.9917 0.3652 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 2.3718 2.9801 4.8497 36 1 0.7905 3.8432 4.4552 37 1 -1.1335 1.0947 3.1702 38 1 -1.1226 1.0505 4.9498 39 1 -1.1609 2.6131 4.0987 40 1 6.8543 1.2431 0.5139 41 1 5.7726 2.2483 -0.4796 42 1 7.6386 1.3160 -1.8319 43 1 6.0643 0.6925 -2.3831 44 1 7.6972 -1.1500 -2.2280 45 1 8.0177 -0.7415 -0.5249 46 1 7.7726 -3.7769 -3.4435 47 1 6.1645 -0.9719 1.1740 48 1 4.5762 -1.5934 0.6651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262953502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:40 Heat of formation + Delta-G solvation = 123.071214 kcal Electronic energy + Delta-G solvation = -27164.150054 eV Core-core repulsion = 23642.578516 eV Total energy + Delta-G solvation = -3521.571539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.78412 -38.44698 -37.76347 -36.14665 -33.86115 -32.70889 -31.87611 -30.04040 -29.72220 -27.93023 -26.82934 -25.02692 -23.92149 -23.72354 -21.64439 -21.08799 -21.04077 -20.18329 -19.83278 -18.53905 -17.44048 -16.62567 -16.04566 -15.68794 -15.62514 -14.90494 -14.53457 -14.42163 -14.07465 -13.73100 -13.53580 -13.50185 -13.09798 -12.81213 -12.64009 -12.49132 -12.49028 -12.00196 -11.85249 -11.68094 -11.61461 -11.33842 -10.98060 -10.85736 -10.79521 -10.71751 -10.37350 -10.32504 -10.20369 -9.96295 -9.91671 -9.71491 -9.57288 -9.25395 -8.84338 -8.53791 -8.38990 -8.16712 -6.02087 -4.08110 1.74811 1.92310 2.61445 2.96459 3.29720 3.36614 3.40871 3.67778 4.09055 4.20421 4.44381 4.46136 4.60114 4.64900 4.66962 4.70252 5.06309 5.11364 5.28230 5.29612 5.34636 5.39447 5.48805 5.53921 5.61102 5.67776 5.74064 5.77887 5.84179 5.93081 6.01267 6.07431 6.08658 6.23109 6.36552 6.38589 6.40288 6.44857 6.58390 6.67843 6.77051 6.89006 7.06370 7.31225 7.40455 7.71004 7.76297 7.98467 8.09547 8.40574 8.94809 8.97725 9.56576 11.04034 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.003422 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.114934 B = 8180.038301 C = 8526.588035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.166 4.166 3 C 0.143 3.857 4 N -0.461 5.461 5 C 0.200 3.800 6 C -0.077 4.077 7 H 0.118 0.882 8 C -0.146 4.146 9 C -0.132 4.132 10 H 0.109 0.891 11 C -0.122 4.122 12 N -0.289 5.289 13 N -0.315 5.315 14 C 0.366 3.634 15 N -0.469 5.469 16 C 0.075 3.925 17 C -0.116 4.116 18 C -0.113 4.113 19 C 0.059 3.941 20 H 0.035 0.965 21 C -0.515 4.515 22 H 0.055 0.945 23 C 0.065 3.935 24 N -0.888 5.888 25 Si 0.891 3.109 26 H -0.281 1.281 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.081 3.919 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.260 0.740 47 H 0.041 0.959 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.699 12.587 6.110 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.020 3.980 4 N -0.154 5.154 5 C -0.067 4.067 6 C -0.097 4.097 7 H 0.136 0.864 8 C -0.184 4.184 9 C -0.151 4.151 10 H 0.127 0.873 11 C -0.179 4.179 12 N -0.130 5.130 13 N -0.158 5.158 14 C 0.010 3.990 15 N -0.195 5.195 16 C -0.052 4.052 17 C -0.154 4.154 18 C -0.151 4.151 19 C 0.040 3.960 20 H 0.053 0.947 21 C -0.554 4.554 22 H 0.073 0.927 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.719 3.281 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.044 4.044 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.939 12.545 6.661 20.613 hybrid contribution -0.001 -1.047 -0.522 1.170 sum -14.940 11.498 6.139 19.827 Atomic orbital electron populations 1.23854 0.95397 1.02197 0.99380 1.23144 0.96177 0.98487 1.00665 1.20888 0.91526 0.96791 0.88762 1.46278 1.10998 1.47233 1.10842 1.23573 0.97691 1.03437 0.81974 1.20083 0.91628 1.05294 0.92720 0.86383 1.23180 1.03354 0.95985 0.95885 1.22483 0.95386 0.97250 1.00016 0.87319 1.21395 0.92258 1.01999 1.02287 1.73918 0.97016 1.16218 1.25810 1.74689 1.23084 1.17595 1.00399 1.22702 0.83977 0.99845 0.92498 1.58958 1.26139 1.04754 1.29662 1.22094 0.90151 0.94311 0.98644 1.21711 0.98848 0.99267 0.95542 1.21700 0.99292 0.91089 1.03068 1.18690 0.93247 0.93018 0.91083 0.94711 1.21083 1.38530 0.98325 0.97439 0.92695 1.24904 0.95725 0.98062 0.94972 1.69878 1.43340 1.36841 1.02599 0.86603 0.78319 0.84775 0.78382 1.20717 1.21202 1.19888 1.22438 0.98434 0.82706 1.00838 0.88456 0.87732 0.86181 0.89072 0.87066 0.87242 0.88025 0.92014 0.91755 0.92352 0.93637 0.92446 0.92653 0.91956 0.88703 0.94589 0.92983 0.94104 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 14.32 29.02 0.42 -1.09 16 2 C -0.17 -1.91 9.85 -36.03 -0.35 -2.27 16 3 C 0.14 1.66 6.45 -5.19 -0.03 1.62 16 4 N -0.46 -7.02 2.79 -115.37 -0.32 -7.34 16 5 C 0.20 3.00 7.59 -154.01 -1.17 1.83 16 6 C -0.08 -0.80 5.72 -91.78 -0.52 -1.33 16 7 H 0.12 0.98 7.56 -51.93 -0.39 0.58 16 8 C -0.15 -1.35 9.79 -26.73 -0.26 -1.61 16 9 C -0.13 -1.24 6.11 -90.62 -0.55 -1.79 16 10 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 11 C -0.12 -0.83 10.19 37.16 0.38 -0.45 16 12 N -0.29 -5.31 11.79 32.99 0.39 -4.92 16 13 N -0.31 -6.40 12.19 30.31 0.37 -6.03 16 14 C 0.37 6.79 6.41 -318.88 -2.05 4.75 16 15 N -0.47 -8.96 4.67 -174.54 -0.82 -9.78 16 16 C 0.08 1.37 5.39 -3.83 -0.02 1.35 16 17 C -0.12 -2.17 6.10 -26.65 -0.16 -2.33 16 18 C -0.11 -2.61 5.02 -26.61 -0.13 -2.74 16 19 C 0.06 1.43 2.27 -91.69 -0.21 1.22 16 20 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.52 -13.96 8.57 -34.44 -0.30 -14.25 16 22 H 0.05 1.49 7.75 -52.48 -0.41 1.09 16 23 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 24 N -0.89 -24.72 11.35 55.43 0.63 -24.09 16 25 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 29 C 0.08 1.79 4.60 -3.83 -0.02 1.77 16 30 H 0.10 0.66 7.84 -52.48 -0.41 0.25 16 31 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.09 0.78 7.12 -51.93 -0.37 0.41 16 34 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.11 1.19 7.92 -51.93 -0.41 0.78 16 36 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -30.37 389.64 -12.17 -42.54 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.19 Total: 1.30 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -5.08 Total: -13.65 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.25 Total: -52.16 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.37 -12.17 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.613 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds