Wall clock time and date at job start Tue Mar 31 2020 11:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00283 * 2 1 4 4 N 1.46500 * 109.47268 * 124.99747 * 3 2 1 5 5 C 1.36742 * 127.13584 * 270.70624 * 4 3 2 6 6 C 1.50692 * 126.35106 * 359.97438 * 5 4 3 7 7 H 1.08998 * 115.54877 * 334.33942 * 6 5 4 8 8 C 1.53000 * 117.50102 * 188.62145 * 6 5 4 9 9 C 1.53000 * 117.49856 * 119.99775 * 6 5 4 10 10 H 1.09005 * 117.49671 * 0.02562 * 9 6 5 11 11 C 1.53002 * 117.50360 * 215.00463 * 9 6 5 12 12 N 1.30299 * 107.30228 * 180.02562 * 5 4 3 13 13 N 1.28532 * 110.05693 * 359.72846 * 12 5 4 14 14 C 1.31226 * 109.85292 * 0.44957 * 13 12 5 15 15 N 1.38575 * 126.46721 * 179.82197 * 14 13 12 16 16 C 1.46846 * 111.00324 * 296.83444 * 15 14 13 17 17 C 1.53042 * 109.52495 * 185.84271 * 16 15 14 18 18 C 1.53121 * 109.27612 * 300.81483 * 17 16 15 19 19 C 1.53120 * 109.21147 * 57.62344 * 18 17 16 20 20 H 1.09005 * 109.50410 * 62.31970 * 19 18 17 21 21 C 1.50694 * 109.50302 * 182.43344 * 19 18 17 22 22 H 1.08006 * 119.99487 * 120.00069 * 21 19 18 23 23 C 1.37877 * 120.00375 * 300.00124 * 21 19 18 24 24 N 1.31509 * 119.99606 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 119.99894 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46889 * 90.00345 * 25 23 21 27 27 H 1.48506 * 109.46764 * 210.00086 * 25 23 21 28 28 H 1.48491 * 109.47334 * 329.99897 * 25 23 21 29 29 C 1.46849 * 111.00092 * 61.04143 * 15 14 13 30 30 H 1.08007 * 119.99627 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00395 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99939 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47202 * 4.99972 * 3 2 1 34 34 H 1.09000 * 109.47317 * 245.00093 * 3 2 1 35 35 H 1.08997 * 117.49766 * 0.02562 * 8 6 5 36 36 H 1.09002 * 117.49353 * 145.02037 * 8 6 5 37 37 H 1.09000 * 109.46279 * 60.00376 * 11 9 6 38 38 H 1.08998 * 109.47303 * 180.02562 * 11 9 6 39 39 H 1.09001 * 109.46799 * 300.00399 * 11 9 6 40 40 H 1.08998 * 109.46865 * 65.82143 * 16 15 14 41 41 H 1.09006 * 109.45653 * 305.85260 * 16 15 14 42 42 H 1.09003 * 109.49946 * 180.87999 * 17 16 15 43 43 H 1.08995 * 109.50687 * 60.75492 * 17 16 15 44 44 H 1.08998 * 109.52536 * 177.55833 * 18 17 16 45 45 H 1.09002 * 109.52220 * 297.68886 * 18 17 16 46 46 H 0.97002 * 119.99896 * 179.97438 * 24 23 21 47 47 H 1.08999 * 109.46576 * 294.17592 * 29 15 14 48 48 H 1.08999 * 109.46003 * 54.15586 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7406 1.7812 2.3979 6 6 1.4385 2.3494 2.9004 7 1 0.7991 2.8014 2.1421 8 6 1.4333 2.9775 4.2955 9 6 0.7538 1.6266 4.0621 10 1 1.2455 0.7403 4.4633 11 6 -0.7758 1.5938 4.0708 12 7 3.8343 1.6281 3.0893 13 7 4.7524 1.1112 2.3532 14 6 4.2927 0.9141 1.1400 15 7 4.9925 0.3776 0.0710 16 6 6.1272 1.2336 -0.2980 17 6 6.7869 0.6893 -1.5672 18 6 7.2654 -0.7430 -1.3137 19 6 6.0743 -1.6034 -0.8832 20 1 5.3400 -1.6373 -1.6881 21 6 6.5481 -3.0001 -0.5743 22 1 6.4048 -3.4129 0.4134 23 6 7.1645 -3.7512 -1.5525 24 7 7.3386 -3.2487 -2.7553 25 14 7.7525 -5.4823 -1.1693 26 1 6.6647 -6.4503 -1.4605 27 1 8.9358 -5.8002 -2.0084 28 1 8.1245 -5.5725 0.2654 29 6 5.4342 -0.9917 0.3652 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9352 0.0004 32 1 1.8499 -0.9353 0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6213 1.4026 -0.9314 35 1 2.3718 2.9801 4.8497 36 1 0.7905 3.8432 4.4552 37 1 -1.1335 1.0947 3.1702 38 1 -1.1226 1.0505 4.9498 39 1 -1.1609 2.6131 4.0987 40 1 6.8543 1.2431 0.5139 41 1 5.7726 2.2483 -0.4796 42 1 7.6386 1.3160 -1.8319 43 1 6.0643 0.6925 -2.3831 44 1 7.6972 -1.1500 -2.2280 45 1 8.0177 -0.7415 -0.5249 46 1 7.7726 -3.7769 -3.4435 47 1 6.1645 -0.9719 1.1740 48 1 4.5762 -1.5934 0.6651 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262953502.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:39 Heat of formation + Delta-G solvation = 109.120690 kcal Electronic energy + Delta-G solvation = -27164.754994 eV Core-core repulsion = 23642.578516 eV Total energy + Delta-G solvation = -3522.176479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07937 -40.00036 -38.66391 -37.16519 -35.72137 -33.84122 -33.53694 -31.87155 -30.82495 -28.85359 -27.80725 -27.03750 -25.40511 -24.89092 -23.37045 -22.34168 -21.86835 -21.32005 -20.76907 -20.23204 -18.85487 -18.18388 -17.35847 -17.22019 -16.72069 -16.49658 -15.90258 -15.64935 -15.27232 -15.06842 -14.66458 -14.60287 -14.49892 -14.24954 -14.06756 -13.74999 -13.53777 -13.27403 -12.89895 -12.79097 -12.74204 -12.67912 -12.62947 -12.48202 -12.30000 -11.97296 -11.89172 -11.80216 -11.59455 -11.40888 -11.14546 -11.05560 -11.04911 -10.78759 -10.52860 -10.43554 -9.86161 -9.79355 -8.12384 -6.25912 0.57423 0.92581 1.39262 1.40626 1.50390 1.55580 1.65013 2.40269 2.74524 2.87510 3.15094 3.23933 3.57540 3.78068 3.83307 3.85866 3.90113 3.96261 4.07628 4.17879 4.26237 4.32313 4.42764 4.47397 4.50304 4.52829 4.61996 4.78121 4.78542 4.84792 4.89593 4.95652 4.98120 5.01775 5.01954 5.07130 5.21493 5.24464 5.25871 5.41335 5.46488 5.53578 5.58659 5.61078 5.67737 5.75531 5.95700 6.08741 6.29065 6.34759 6.82328 7.41573 7.64287 8.92439 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.003422 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.114934 B = 8180.038301 C = 8526.588035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.203 4.203 3 C 0.140 3.860 4 N -0.455 5.455 5 C 0.219 3.781 6 C -0.088 4.088 7 H 0.154 0.846 8 C -0.138 4.138 9 C -0.126 4.126 10 H 0.080 0.920 11 C -0.116 4.116 12 N -0.328 5.328 13 N -0.352 5.352 14 C 0.346 3.654 15 N -0.460 5.460 16 C 0.079 3.921 17 C -0.104 4.104 18 C -0.107 4.107 19 C 0.063 3.937 20 H 0.009 0.991 21 C -0.541 4.541 22 H 0.044 0.956 23 C 0.023 3.977 24 N -0.908 5.908 25 Si 0.952 3.048 26 H -0.274 1.274 27 H -0.279 1.279 28 H -0.274 1.274 29 C 0.103 3.897 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.022 0.978 46 H 0.263 0.737 47 H 0.019 0.981 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.665 14.414 6.021 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.222 4.222 3 C 0.020 3.980 4 N -0.147 5.147 5 C -0.049 4.049 6 C -0.108 4.108 7 H 0.172 0.828 8 C -0.176 4.176 9 C -0.146 4.146 10 H 0.098 0.902 11 C -0.173 4.173 12 N -0.168 5.168 13 N -0.195 5.195 14 C -0.012 4.012 15 N -0.186 5.186 16 C -0.048 4.048 17 C -0.141 4.141 18 C -0.145 4.145 19 C 0.044 3.956 20 H 0.028 0.972 21 C -0.580 4.580 22 H 0.062 0.938 23 C -0.177 4.177 24 N -0.547 5.547 25 Si 0.777 3.223 26 H -0.200 1.200 27 H -0.204 1.204 28 H -0.199 1.199 29 C -0.024 4.024 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.154 0.846 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.922 14.380 6.564 23.897 hybrid contribution 0.795 -1.617 -0.444 1.856 sum -17.127 12.763 6.120 22.219 Atomic orbital electron populations 1.24155 0.94156 1.04143 0.94608 1.22891 0.97171 0.97009 1.05104 1.21199 0.91441 0.98267 0.87109 1.46493 1.10129 1.46143 1.11918 1.24479 0.98280 1.00828 0.81305 1.20487 0.89955 1.06247 0.94118 0.82809 1.23259 1.02901 0.97139 0.94296 1.22489 0.97136 0.96309 0.98695 0.90192 1.21402 0.89605 1.03521 1.02803 1.73838 0.98182 1.18164 1.26622 1.74561 1.24893 1.18635 1.01419 1.22571 0.85423 1.01236 0.91957 1.58871 1.26303 1.03468 1.29983 1.22096 0.89680 0.95342 0.97659 1.21594 0.99891 0.96729 0.95923 1.21511 0.98184 0.93656 1.01126 1.18551 0.93234 0.92744 0.91103 0.97236 1.21384 1.39326 1.00025 0.97233 0.93768 1.25601 0.95684 1.01610 0.94821 1.69987 1.43506 1.38055 1.03161 0.85658 0.78087 0.80435 0.78095 1.19983 1.20381 1.19918 1.21985 0.97028 0.84634 0.98770 0.84931 0.87144 0.90138 0.84835 0.87860 0.89627 0.84618 0.91327 0.91470 0.90253 0.95004 0.89758 0.89904 0.91628 0.91184 0.95888 0.92762 0.96245 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 14.32 67.78 0.97 -0.93 16 2 C -0.20 -4.47 9.85 25.65 0.25 -4.22 16 3 C 0.14 3.00 6.45 85.63 0.55 3.55 16 4 N -0.46 -13.61 2.79 -518.92 -1.45 -15.06 16 5 C 0.22 6.38 7.59 137.63 1.04 7.42 16 6 C -0.09 -1.58 5.72 -11.54 -0.07 -1.64 16 7 H 0.15 1.69 7.56 -2.39 -0.02 1.67 16 8 C -0.14 -2.19 9.79 30.60 0.30 -1.89 16 9 C -0.13 -2.08 6.11 -10.79 -0.07 -2.14 16 10 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 11 C -0.12 -1.11 10.19 71.98 0.73 -0.38 16 12 N -0.33 -12.34 11.79 -49.54 -0.58 -12.93 16 13 N -0.35 -14.90 12.19 -58.01 -0.71 -15.60 16 14 C 0.35 13.18 6.41 260.11 1.67 14.85 16 15 N -0.46 -18.23 4.67 -706.13 -3.30 -21.52 16 16 C 0.08 2.90 5.39 86.33 0.47 3.36 16 17 C -0.10 -3.88 6.10 30.65 0.19 -3.70 16 18 C -0.11 -5.09 5.02 30.68 0.15 -4.94 16 19 C 0.06 3.23 2.27 -11.49 -0.03 3.20 16 20 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 21 C -0.54 -30.69 8.57 25.60 0.22 -30.48 16 22 H 0.04 2.53 7.75 -2.91 -0.02 2.51 16 23 C 0.02 1.26 5.30 84.66 0.45 1.70 16 24 N -0.91 -51.78 11.35 21.45 0.24 -51.54 16 25 Si 0.95 44.17 29.54 68.60 2.03 46.19 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 29 C 0.10 4.80 4.60 86.33 0.40 5.20 16 30 H 0.13 1.01 7.84 -2.91 -0.02 0.99 16 31 H 0.11 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.08 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.13 1.67 7.12 -2.39 -0.02 1.66 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.09 1.81 7.92 -2.39 -0.02 1.79 16 36 H 0.14 1.24 8.05 -2.39 -0.02 1.22 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.47 7.90 -2.39 -0.02 0.45 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 2.67 8.10 -2.38 -0.02 2.65 16 42 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.07 3.70 6.15 -2.39 -0.01 3.69 16 45 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.04 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -71.14 389.64 4.38 -66.75 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.92 Total: 14.74 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 7.23 Total: -11.04 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.79 Total: -116.65 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.14 4.38 -66.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262953502.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.875 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds