Wall clock time and date at job start Tue Mar 31 2020 11:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47172 * 2 1 4 4 C 1.36730 * 127.13722 * 270.90482 * 3 2 1 5 5 C 1.50699 * 126.35152 * 359.97105 * 4 3 2 6 6 C 1.54635 * 111.03873 * 235.33042 * 5 4 3 7 7 C 1.51163 * 104.69225 * 217.35859 * 6 5 4 8 8 C 1.30523 * 111.12394 * 16.37830 * 7 6 5 9 9 C 1.51103 * 111.10178 * 0.03745 * 8 7 6 10 10 N 1.30296 * 107.30723 * 179.83498 * 4 3 2 11 11 N 1.28534 * 110.05295 * 0.44461 * 10 4 3 12 12 C 1.31221 * 109.85340 * 359.72033 * 11 10 4 13 13 N 1.38589 * 126.46822 * 180.02562 * 12 11 10 14 14 C 1.46899 * 110.99997 * 256.27855 * 13 12 11 15 15 C 1.50691 * 109.47228 * 59.08320 * 14 13 12 16 16 H 1.08007 * 120.00001 * 3.58255 * 15 14 13 17 17 C 1.37874 * 120.00189 * 183.56921 * 15 14 13 18 18 N 1.31514 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00358 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46877 * 60.00720 * 19 17 15 21 21 H 1.48505 * 109.47460 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47411 * 300.00749 * 19 17 15 23 23 C 1.46898 * 110.99800 * 20.23449 * 13 12 11 24 24 C 1.53004 * 109.47000 * 163.99100 * 23 13 12 25 25 C 1.52994 * 117.49912 * 243.38640 * 24 23 13 26 26 C 1.52999 * 117.49955 * 174.72531 * 24 23 13 27 27 H 1.08993 * 109.47527 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47335 * 59.99609 * 1 2 3 29 29 H 1.09002 * 109.46925 * 299.99873 * 1 2 3 30 30 H 1.08998 * 109.47335 * 120.00391 * 2 1 3 31 31 H 1.08998 * 109.47086 * 240.00624 * 2 1 3 32 32 H 1.09005 * 110.91071 * 359.29586 * 5 4 3 33 33 H 1.08995 * 110.38316 * 336.13789 * 6 5 4 34 34 H 1.08994 * 110.38648 * 98.51887 * 6 5 4 35 35 H 1.08001 * 124.43385 * 196.40802 * 7 6 5 36 36 H 1.08006 * 124.44981 * 180.02562 * 8 7 6 37 37 H 1.09007 * 110.38161 * 224.74801 * 9 8 7 38 38 H 1.08995 * 110.39166 * 102.37569 * 9 8 7 39 39 H 1.08995 * 109.46685 * 179.08847 * 14 13 12 40 40 H 1.08998 * 109.46648 * 299.08462 * 14 13 12 41 41 H 0.97003 * 120.00325 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47242 * 283.99002 * 23 13 12 43 43 H 1.09000 * 109.47646 * 43.99026 * 23 13 12 44 44 H 1.08997 * 115.54987 * 29.06381 * 24 23 13 45 45 H 1.08998 * 117.50115 * 0.02562 * 25 24 23 46 46 H 1.09000 * 117.49560 * 145.02047 * 25 24 23 47 47 H 1.08999 * 117.49914 * 214.98205 * 26 24 23 48 48 H 1.09007 * 117.49972 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2772 2.1653 -1.0899 5 6 2.1135 1.7689 -2.5345 6 6 3.4311 1.9711 -3.3184 7 6 2.9956 2.4640 -4.6794 8 6 1.7599 2.8835 -4.6546 9 6 1.1648 2.7414 -3.2730 10 7 2.6890 3.3197 -0.6479 11 7 2.7165 3.3153 0.6372 12 6 2.3148 2.1501 1.0875 13 7 2.2108 1.7721 2.4168 14 6 3.3213 0.8912 2.8021 15 6 4.6292 1.6076 2.5854 16 1 4.6335 2.6359 2.2551 17 6 5.8205 0.9505 2.8090 18 7 5.8154 -0.3017 3.2110 19 14 7.4418 1.8387 2.5411 20 1 7.5116 3.0221 3.4357 21 1 8.5668 0.9190 2.8477 22 1 7.5361 2.2812 1.1267 23 6 2.1425 2.9480 3.2947 24 6 1.6354 2.5252 4.6749 25 6 0.3008 3.1065 5.1457 26 6 1.6104 3.5887 5.7746 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.7623 0.7404 -2.6184 33 1 4.0549 2.7172 -2.8263 34 1 3.9674 1.0267 -3.4096 35 1 3.6245 2.4681 -5.5574 36 1 1.2320 3.2803 -5.5093 37 1 0.1612 2.3203 -3.3334 38 1 1.1425 3.7070 -2.7679 39 1 3.2239 0.6227 3.8540 40 1 3.2966 -0.0122 2.1928 41 1 6.6535 -0.7642 3.3679 42 1 3.1353 3.3874 3.3913 43 1 1.4604 3.6823 2.8662 44 1 1.8708 1.5025 4.9693 45 1 -0.2162 3.7898 4.4720 46 1 -0.3418 2.4663 5.7500 47 1 1.8289 3.2655 6.7924 48 1 1.9549 4.5897 5.5146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263045949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:48 Heat of formation + Delta-G solvation = 127.053633 kcal Electronic energy + Delta-G solvation = -27576.503183 eV Core-core repulsion = 24055.104335 eV Total energy + Delta-G solvation = -3521.398848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31789 -38.53451 -37.75634 -35.67536 -35.10108 -32.56785 -30.82066 -30.07985 -28.13500 -27.78101 -27.20790 -25.38943 -23.87540 -22.56587 -22.28943 -22.01266 -20.24863 -19.67411 -19.04839 -18.76776 -16.89855 -16.46951 -16.15281 -15.72549 -15.62659 -14.98200 -14.79094 -14.38191 -14.05112 -13.69203 -13.50132 -12.80446 -12.75167 -12.63842 -12.21931 -12.17576 -12.11962 -11.97775 -11.70632 -11.41561 -11.33160 -11.23588 -11.13839 -11.11883 -11.03350 -10.84079 -10.67502 -10.50052 -10.27046 -10.05758 -9.89799 -9.60141 -9.49347 -9.40584 -8.86228 -8.59262 -8.51331 -7.41461 -6.14043 -4.20408 2.25361 2.46541 2.87697 3.29913 3.32262 3.39501 3.58578 4.19253 4.38483 4.46884 4.59352 4.73320 4.78289 4.89513 5.10412 5.16654 5.18848 5.23471 5.28602 5.35216 5.39254 5.46024 5.53422 5.66584 5.69492 5.79630 5.85723 5.87577 5.90636 5.95410 5.97273 5.99979 6.08403 6.16410 6.20944 6.25352 6.42870 6.47203 6.51572 6.60970 6.72138 6.85439 6.88692 7.00599 7.26133 7.30540 7.61461 7.82991 8.05426 8.18204 8.88629 9.47078 9.52692 10.92704 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005190 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.654765 B = 5393.201728 C = 6902.013765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.472 5.472 4 C 0.160 3.840 5 C 0.003 3.997 6 C -0.092 4.092 7 C -0.160 4.160 8 C -0.168 4.168 9 C -0.087 4.087 10 N -0.284 5.284 11 N -0.332 5.332 12 C 0.412 3.588 13 N -0.467 5.467 14 C 0.192 3.808 15 C -0.550 4.550 16 H 0.070 0.930 17 C 0.070 3.930 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.108 3.892 24 C -0.130 4.130 25 C -0.185 4.185 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 0.270 -8.414 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.166 5.166 4 C -0.107 4.107 5 C -0.018 4.018 6 C -0.130 4.130 7 C -0.178 4.178 8 C -0.186 4.186 9 C -0.125 4.125 10 N -0.124 5.124 11 N -0.176 5.176 12 C 0.056 3.944 13 N -0.191 5.191 14 C 0.069 3.931 15 C -0.589 4.589 16 H 0.088 0.912 17 C -0.133 4.133 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.019 4.019 24 C -0.148 4.148 25 C -0.222 4.222 26 C -0.218 4.218 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.380 1.241 -8.241 14.105 hybrid contribution 1.313 -0.738 -0.108 1.510 sum -10.067 0.503 -8.349 13.089 Atomic orbital electron populations 1.22098 0.94328 1.02689 1.02965 1.21772 0.95228 0.79746 1.04790 1.46039 1.51163 1.13541 1.05877 1.24008 1.06726 0.89628 0.90378 1.20172 0.97181 0.99400 0.85015 1.21439 0.96701 1.02015 0.92813 1.23251 0.96687 1.00239 0.97652 1.23194 0.96790 1.01169 0.97439 1.21384 0.97945 1.00097 0.93062 1.73766 1.17097 1.17653 1.03862 1.74636 1.21335 1.19193 1.02423 1.22423 0.96022 0.87739 0.88227 1.59294 1.45726 1.18684 0.95395 1.19963 0.84794 0.90892 0.97481 1.21746 0.91186 0.99602 1.46382 0.91199 1.24878 0.99214 0.94721 0.94521 1.69918 1.27306 1.10079 1.45843 0.86645 0.82788 0.79629 0.79048 1.19917 1.21244 1.20196 1.21420 1.01473 0.89940 0.89093 1.22233 0.99193 0.98864 0.94545 1.22998 0.90989 1.04074 1.04127 1.22911 1.01439 0.99547 0.97871 0.90839 0.92494 0.91353 0.87952 0.89739 0.89243 0.89094 0.90971 0.85831 0.85855 0.91243 0.89359 0.93417 0.94923 0.92689 0.91129 0.91764 0.87171 0.89337 0.89457 0.89112 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.24 37.15 0.38 -1.52 16 2 C 0.11 1.57 6.61 -4.04 -0.03 1.55 16 3 N -0.47 -8.74 2.81 -114.09 -0.32 -9.06 16 4 C 0.16 2.91 6.61 -154.02 -1.02 1.89 16 5 C 0.00 0.05 3.54 -90.05 -0.32 -0.27 16 6 C -0.09 -1.24 6.37 -26.80 -0.17 -1.41 16 7 C -0.16 -1.79 10.78 -35.67 -0.38 -2.17 16 8 C -0.17 -1.80 10.77 -35.70 -0.38 -2.18 16 9 C -0.09 -1.05 6.37 -26.83 -0.17 -1.22 16 10 N -0.28 -6.11 11.79 32.99 0.39 -5.72 16 11 N -0.33 -7.73 10.96 30.32 0.33 -7.40 16 12 C 0.41 8.90 5.80 -318.86 -1.85 7.05 16 13 N -0.47 -9.83 4.70 -175.89 -0.83 -10.66 16 14 C 0.19 4.66 4.90 -4.98 -0.02 4.64 16 15 C -0.55 -15.00 7.60 -34.45 -0.26 -15.26 16 16 H 0.07 2.01 6.25 -52.48 -0.33 1.68 16 17 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 18 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 23 C 0.11 2.14 4.59 -3.82 -0.02 2.13 16 24 C -0.13 -2.21 5.69 -90.62 -0.52 -2.72 16 25 C -0.18 -2.58 10.18 -26.70 -0.27 -2.86 16 26 C -0.18 -2.62 10.25 -26.69 -0.27 -2.89 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 1.65 6.51 -51.93 -0.34 1.31 16 31 H 0.08 1.04 7.30 -51.93 -0.38 0.66 16 32 H 0.09 1.05 7.08 -51.93 -0.37 0.68 16 33 H 0.09 1.47 7.71 -51.93 -0.40 1.07 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.24 7.74 -51.93 -0.40 0.84 16 39 H 0.05 1.20 6.60 -51.93 -0.34 0.85 16 40 H 0.03 0.84 6.59 -51.93 -0.34 0.49 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.07 1.60 6.46 -51.93 -0.34 1.26 16 43 H 0.06 1.25 7.58 -51.93 -0.39 0.85 16 44 H 0.11 2.00 6.78 -51.93 -0.35 1.64 16 45 H 0.09 1.20 8.03 -51.93 -0.42 0.79 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 48 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 384.37 15.07 5.79 5.79 Total: -1.00 -31.06 384.37 -12.08 -43.15 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.76 Total: 4.90 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -5.40 Total: -13.42 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.31 Total: -57.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.06 -12.08 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263045949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.200 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds