Wall clock time and date at job start Tue Mar 31 2020 11:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47172 * 2 1 4 4 C 1.36730 * 127.13722 * 270.90482 * 3 2 1 5 5 C 1.50699 * 126.35152 * 359.97105 * 4 3 2 6 6 C 1.54635 * 111.03873 * 235.33042 * 5 4 3 7 7 C 1.51163 * 104.69225 * 217.35859 * 6 5 4 8 8 C 1.30523 * 111.12394 * 16.37830 * 7 6 5 9 9 C 1.51103 * 111.10178 * 0.03745 * 8 7 6 10 10 N 1.30296 * 107.30723 * 179.83498 * 4 3 2 11 11 N 1.28534 * 110.05295 * 0.44461 * 10 4 3 12 12 C 1.31221 * 109.85340 * 359.72033 * 11 10 4 13 13 N 1.38589 * 126.46822 * 180.02562 * 12 11 10 14 14 C 1.46899 * 110.99997 * 256.27855 * 13 12 11 15 15 C 1.50691 * 109.47228 * 59.08320 * 14 13 12 16 16 H 1.08007 * 120.00001 * 3.58255 * 15 14 13 17 17 C 1.37874 * 120.00189 * 183.56921 * 15 14 13 18 18 N 1.31514 * 119.99824 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00358 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46877 * 60.00720 * 19 17 15 21 21 H 1.48505 * 109.47460 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47411 * 300.00749 * 19 17 15 23 23 C 1.46898 * 110.99800 * 20.23449 * 13 12 11 24 24 C 1.53004 * 109.47000 * 163.99100 * 23 13 12 25 25 C 1.52994 * 117.49912 * 243.38640 * 24 23 13 26 26 C 1.52999 * 117.49955 * 174.72531 * 24 23 13 27 27 H 1.08993 * 109.47527 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47335 * 59.99609 * 1 2 3 29 29 H 1.09002 * 109.46925 * 299.99873 * 1 2 3 30 30 H 1.08998 * 109.47335 * 120.00391 * 2 1 3 31 31 H 1.08998 * 109.47086 * 240.00624 * 2 1 3 32 32 H 1.09005 * 110.91071 * 359.29586 * 5 4 3 33 33 H 1.08995 * 110.38316 * 336.13789 * 6 5 4 34 34 H 1.08994 * 110.38648 * 98.51887 * 6 5 4 35 35 H 1.08001 * 124.43385 * 196.40802 * 7 6 5 36 36 H 1.08006 * 124.44981 * 180.02562 * 8 7 6 37 37 H 1.09007 * 110.38161 * 224.74801 * 9 8 7 38 38 H 1.08995 * 110.39166 * 102.37569 * 9 8 7 39 39 H 1.08995 * 109.46685 * 179.08847 * 14 13 12 40 40 H 1.08998 * 109.46648 * 299.08462 * 14 13 12 41 41 H 0.97003 * 120.00325 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.47242 * 283.99002 * 23 13 12 43 43 H 1.09000 * 109.47646 * 43.99026 * 23 13 12 44 44 H 1.08997 * 115.54987 * 29.06381 * 24 23 13 45 45 H 1.08998 * 117.50115 * 0.02562 * 25 24 23 46 46 H 1.09000 * 117.49560 * 145.02047 * 25 24 23 47 47 H 1.08999 * 117.49914 * 214.98205 * 26 24 23 48 48 H 1.09007 * 117.49972 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2772 2.1653 -1.0899 5 6 2.1135 1.7689 -2.5345 6 6 3.4311 1.9711 -3.3184 7 6 2.9956 2.4640 -4.6794 8 6 1.7599 2.8835 -4.6546 9 6 1.1648 2.7414 -3.2730 10 7 2.6890 3.3197 -0.6479 11 7 2.7165 3.3153 0.6372 12 6 2.3148 2.1501 1.0875 13 7 2.2108 1.7721 2.4168 14 6 3.3213 0.8912 2.8021 15 6 4.6292 1.6076 2.5854 16 1 4.6335 2.6359 2.2551 17 6 5.8205 0.9505 2.8090 18 7 5.8154 -0.3017 3.2110 19 14 7.4418 1.8387 2.5411 20 1 7.5116 3.0221 3.4357 21 1 8.5668 0.9190 2.8477 22 1 7.5361 2.2812 1.1267 23 6 2.1425 2.9480 3.2947 24 6 1.6354 2.5252 4.6749 25 6 0.3008 3.1065 5.1457 26 6 1.6104 3.5887 5.7746 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.7623 0.7404 -2.6184 33 1 4.0549 2.7172 -2.8263 34 1 3.9674 1.0267 -3.4096 35 1 3.6245 2.4681 -5.5574 36 1 1.2320 3.2803 -5.5093 37 1 0.1612 2.3203 -3.3334 38 1 1.1425 3.7070 -2.7679 39 1 3.2239 0.6227 3.8540 40 1 3.2966 -0.0122 2.1928 41 1 6.6535 -0.7642 3.3679 42 1 3.1353 3.3874 3.3913 43 1 1.4604 3.6823 2.8662 44 1 1.8708 1.5025 4.9693 45 1 -0.2162 3.7898 4.4720 46 1 -0.3418 2.4663 5.7500 47 1 1.8289 3.2655 6.7924 48 1 1.9549 4.5897 5.5146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263045949.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:47 Heat of formation + Delta-G solvation = 112.171238 kcal Electronic energy + Delta-G solvation = -27577.148532 eV Core-core repulsion = 24055.104335 eV Total energy + Delta-G solvation = -3522.044197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.87103 -39.69658 -39.13847 -37.15440 -36.47220 -34.66251 -32.08104 -31.35463 -29.55625 -29.12068 -28.68806 -27.13508 -25.26924 -24.27356 -23.58323 -23.17152 -21.65858 -21.16699 -20.43780 -19.64820 -18.75874 -18.05547 -17.46964 -17.24469 -16.81495 -16.56345 -16.35675 -15.92193 -15.43227 -15.15637 -14.83347 -14.57434 -14.00366 -13.80048 -13.70752 -13.38331 -13.25429 -13.14726 -13.08772 -13.00357 -12.78434 -12.65510 -12.50736 -12.41003 -12.31194 -12.24072 -12.17840 -12.05713 -12.01183 -11.93766 -11.28879 -11.20700 -10.92615 -10.86273 -10.67633 -10.24642 -9.76646 -9.15404 -8.28348 -6.40889 0.91866 1.27839 1.28541 1.37763 1.41338 1.46020 1.96366 2.30178 2.85814 3.01032 3.13538 3.28534 3.65516 3.72609 3.78699 3.90702 4.03040 4.07948 4.10005 4.17494 4.30860 4.35080 4.38434 4.39957 4.44930 4.58797 4.67268 4.78211 4.80730 4.82677 4.84282 4.93523 4.95836 4.98064 5.03496 5.06787 5.14419 5.17671 5.20980 5.22860 5.31151 5.31505 5.39934 5.62934 5.63305 5.72165 5.89604 6.01951 6.05141 6.49361 6.73092 7.28459 7.92129 8.76308 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.005190 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.654765 B = 5393.201728 C = 6902.013765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.098 3.902 3 N -0.472 5.472 4 C 0.180 3.820 5 C -0.001 4.001 6 C -0.095 4.095 7 C -0.166 4.166 8 C -0.158 4.158 9 C -0.085 4.085 10 N -0.324 5.324 11 N -0.367 5.367 12 C 0.389 3.611 13 N -0.454 5.454 14 C 0.212 3.788 15 C -0.556 4.556 16 H 0.049 0.951 17 C 0.029 3.971 18 N -0.914 5.914 19 Si 0.941 3.059 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.287 1.287 23 C 0.119 3.881 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.172 4.172 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.118 0.882 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.018 0.982 41 H 0.267 0.733 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 -0.478 -9.903 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 N -0.166 5.166 4 C -0.089 4.089 5 C -0.022 4.022 6 C -0.133 4.133 7 C -0.184 4.184 8 C -0.175 4.175 9 C -0.123 4.123 10 N -0.163 5.163 11 N -0.211 5.211 12 C 0.031 3.969 13 N -0.177 5.177 14 C 0.087 3.913 15 C -0.595 4.595 16 H 0.067 0.933 17 C -0.172 4.172 18 N -0.553 5.553 19 Si 0.767 3.233 20 H -0.196 1.196 21 H -0.196 1.196 22 H -0.213 1.213 23 C -0.009 4.009 24 C -0.177 4.177 25 C -0.195 4.195 26 C -0.209 4.209 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.981 0.489 -9.729 16.230 hybrid contribution 1.781 -0.495 0.290 1.871 sum -11.200 -0.006 -9.439 14.647 Atomic orbital electron populations 1.22034 0.91628 1.04621 1.02559 1.22127 0.97431 0.77632 1.05158 1.46367 1.50472 1.14698 1.05023 1.24893 1.03451 0.88493 0.92028 1.20517 0.98173 1.01381 0.82098 1.21425 0.96194 1.01567 0.94149 1.23309 0.97271 1.00848 0.96930 1.23378 0.96576 1.00296 0.97266 1.21376 0.98954 0.98516 0.93475 1.73685 1.19444 1.19889 1.03251 1.74512 1.22245 1.20710 1.03618 1.22534 0.97236 0.88286 0.88829 1.59301 1.43953 1.18782 0.95679 1.19571 0.84724 0.90633 0.96377 1.21856 0.92814 0.98802 1.45985 0.93309 1.25479 1.01736 0.95425 0.94555 1.69977 1.28079 1.10788 1.46463 0.85871 0.80222 0.79015 0.78146 1.19644 1.19600 1.21314 1.21301 0.99509 0.89472 0.90598 1.22064 1.02886 0.98978 0.93761 1.23064 0.90083 1.03154 1.03189 1.23021 1.01619 0.98611 0.97682 0.87678 0.91256 0.93309 0.89963 0.86964 0.86368 0.92625 0.90190 0.83649 0.82994 0.88756 0.91787 0.94486 0.96353 0.92366 0.94820 0.91788 0.88567 0.88747 0.87244 0.87507 0.88937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.10 2.77 6.61 86.38 0.57 3.34 16 3 N -0.47 -17.67 2.81 -514.86 -1.45 -19.12 16 4 C 0.18 6.57 6.61 137.64 0.91 7.48 16 5 C 0.00 -0.02 3.54 -10.43 -0.04 -0.06 16 6 C -0.10 -2.48 6.37 30.55 0.19 -2.29 16 7 C -0.17 -3.30 10.78 26.28 0.28 -3.02 16 8 C -0.16 -2.88 10.77 26.27 0.28 -2.59 16 9 C -0.09 -1.88 6.37 30.53 0.19 -1.68 16 10 N -0.32 -14.48 11.79 -49.54 -0.58 -15.07 16 11 N -0.37 -17.98 10.96 -58.00 -0.64 -18.62 16 12 C 0.39 17.48 5.80 260.11 1.51 18.99 16 13 N -0.45 -19.99 4.70 -710.38 -3.34 -23.33 16 14 C 0.21 10.73 4.90 85.55 0.42 11.15 16 15 C -0.56 -31.55 7.60 25.60 0.19 -31.36 16 16 H 0.05 2.96 6.25 -2.91 -0.02 2.94 16 17 C 0.03 1.64 5.46 84.65 0.46 2.10 16 18 N -0.91 -52.72 13.29 21.45 0.28 -52.44 16 19 Si 0.94 46.25 29.54 68.60 2.03 48.27 16 20 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.29 -14.50 7.11 99.48 0.71 -13.80 16 23 C 0.12 4.95 4.59 86.31 0.40 5.34 16 24 C -0.16 -5.47 5.69 -10.79 -0.06 -5.54 16 25 C -0.16 -4.19 10.18 30.62 0.31 -3.87 16 26 C -0.17 -4.86 10.25 30.62 0.31 -4.55 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 2.68 6.51 -2.39 -0.02 2.67 16 31 H 0.11 2.51 7.30 -2.39 -0.02 2.49 16 32 H 0.12 2.38 7.08 -2.38 -0.02 2.37 16 33 H 0.06 1.85 7.71 -2.39 -0.02 1.83 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 35 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.06 1.76 7.74 -2.39 -0.02 1.74 16 39 H 0.04 1.95 6.60 -2.39 -0.02 1.93 16 40 H 0.02 0.98 6.59 -2.39 -0.02 0.97 16 41 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.03 1.63 6.46 -2.39 -0.02 1.61 16 43 H 0.06 2.61 7.58 -2.39 -0.02 2.59 16 44 H 0.10 3.60 6.78 -2.39 -0.02 3.58 16 45 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 46 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 48 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 Total: -1.00 -70.97 384.37 3.93 -67.04 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.94 Total: 22.26 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 6.68 Total: -9.01 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.72 Total: -128.57 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.97 3.93 -67.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263045949.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.215 kcal (2) G-P(sol) polarization free energy of solvation -70.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds