Wall clock time and date at job start Tue Mar 31 2020 11:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47198 * 135.38617 * 3 2 1 5 5 C 1.52998 * 109.46906 * 255.38277 * 3 2 1 6 6 N 1.46897 * 109.47367 * 15.38659 * 3 2 1 7 7 C 1.46900 * 110.99888 * 298.95692 * 6 3 2 8 8 C 1.38579 * 111.00223 * 175.00029 * 6 3 2 9 9 N 1.31221 * 126.47289 * 44.54648 * 8 6 3 10 10 N 1.28528 * 109.85855 * 180.26314 * 9 8 6 11 11 C 1.30293 * 110.05561 * 359.74182 * 10 9 8 12 12 C 1.50700 * 126.34921 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47079 * 127.97868 * 12 11 10 14 14 C 1.53005 * 109.47057 * 247.97710 * 12 11 10 15 15 C 1.50692 * 109.46907 * 7.97716 * 12 11 10 16 16 H 1.07999 * 120.00029 * 5.31196 * 15 12 11 17 17 C 1.37886 * 120.00074 * 185.31218 * 15 12 11 18 18 N 1.31511 * 120.00004 * 187.85822 * 17 15 12 19 19 Si 1.86796 * 119.99613 * 7.85653 * 17 15 12 20 20 H 1.48495 * 109.47461 * 85.62787 * 19 17 15 21 21 H 1.48506 * 109.47111 * 205.62653 * 19 17 15 22 22 H 1.48507 * 109.47483 * 325.62529 * 19 17 15 23 23 N 1.36449 * 126.47221 * 224.38160 * 8 6 3 24 24 C 1.46498 * 127.13855 * 0.02562 * 23 8 6 25 25 C 1.50695 * 109.47510 * 297.31813 * 24 23 8 26 26 C 1.30994 * 120.00160 * 106.13450 * 25 24 23 27 27 C 1.50706 * 119.99907 * 286.13773 * 25 24 23 28 28 H 4.18748 * 15.03857 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.46912 * 60.00527 * 5 3 2 30 30 H 1.09005 * 109.46689 * 179.97438 * 5 3 2 31 31 H 1.08999 * 109.47331 * 299.99915 * 5 3 2 32 32 H 1.09002 * 109.46765 * 306.75716 * 7 6 3 33 33 H 1.08994 * 109.47368 * 66.76040 * 7 6 3 34 34 H 1.09007 * 109.46802 * 186.76884 * 7 6 3 35 35 H 1.09004 * 109.47250 * 81.93509 * 13 12 11 36 36 H 1.09000 * 109.46731 * 201.92959 * 13 12 11 37 37 H 1.08997 * 109.47236 * 321.93405 * 13 12 11 38 38 H 1.09004 * 109.46641 * 66.43550 * 14 12 11 39 39 H 1.08997 * 109.46801 * 186.43646 * 14 12 11 40 40 H 1.08997 * 109.47090 * 306.43349 * 14 12 11 41 41 H 0.97000 * 119.99877 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47296 * 177.31286 * 24 23 8 43 43 H 1.09001 * 109.46869 * 57.31667 * 24 23 8 44 44 H 1.08003 * 120.00108 * 187.50690 * 26 25 24 45 45 H 1.07998 * 120.00121 * 7.22644 * 26 25 24 46 46 H 1.09007 * 109.46565 * 269.89343 * 27 25 24 47 47 H 1.09004 * 109.47012 * 29.88693 * 27 25 24 48 48 H 1.08994 * 109.47187 * 149.88935 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0091 0.7324 -0.7218 5 6 3.1558 0.3649 1.3958 6 7 3.1364 -1.3344 -0.3675 7 6 2.6863 -2.3449 0.5991 8 6 4.5170 -1.3411 -0.4864 9 7 5.3738 -0.7890 0.3400 10 7 6.5729 -0.9838 -0.0797 11 6 6.5527 -1.6707 -1.1867 12 6 7.7512 -2.1043 -1.9909 13 6 7.6723 -3.6097 -2.2526 14 6 7.7687 -1.3550 -3.3247 15 6 9.0102 -1.7932 -1.2234 16 1 8.9475 -1.4077 -0.2165 17 6 10.2423 -2.0007 -1.8067 18 7 11.3381 -1.8780 -1.0901 19 14 10.3547 -2.4561 -3.6148 20 1 10.3467 -1.2202 -4.4380 21 1 11.6134 -3.2054 -3.8592 22 1 9.1936 -3.3048 -3.9847 23 7 5.2424 -1.9257 -1.4834 24 6 4.7246 -2.6670 -2.6360 25 6 3.9894 -3.8919 -2.1564 26 6 2.6807 -3.9292 -2.1999 27 6 4.7598 -5.0740 -1.6269 28 1 -1.0500 -0.0009 0.0002 29 1 2.7929 -0.3668 2.1175 30 1 4.2459 0.3649 1.3959 31 1 2.7921 1.3556 1.6684 32 1 2.9620 -2.0324 1.6063 33 1 1.6035 -2.4519 0.5354 34 1 3.1598 -3.3004 0.3728 35 1 7.0158 -3.7968 -3.1024 36 1 8.6688 -3.9930 -2.4720 37 1 7.2760 -4.1117 -1.3700 38 1 7.9396 -0.2938 -3.1431 39 1 8.5675 -1.7495 -3.9526 40 1 6.8113 -1.4878 -3.8286 41 1 12.2048 -2.0244 -1.5003 42 1 5.5536 -2.9683 -3.2765 43 1 4.0422 -2.0313 -3.2000 44 1 2.1486 -4.7526 -1.7466 45 1 2.1336 -3.1344 -2.6849 46 1 4.9866 -5.7563 -2.4461 47 1 5.6891 -4.7286 -1.1738 48 1 4.1609 -5.5919 -0.8778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263329999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:10 Heat of formation + Delta-G solvation = 200.745892 kcal Electronic energy + Delta-G solvation = -28404.278041 eV Core-core repulsion = 24886.074729 eV Total energy + Delta-G solvation = -3518.203312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.53394 -38.48198 -36.96896 -35.83246 -33.26648 -32.93695 -31.66487 -29.98776 -28.87820 -27.66247 -26.92090 -26.36977 -26.15215 -24.94211 -23.52201 -22.33967 -20.53515 -19.58475 -18.61939 -18.00428 -16.94606 -16.20691 -16.02921 -15.81809 -15.29448 -15.01808 -14.83063 -14.46213 -13.99915 -13.80394 -13.49230 -13.36458 -13.06543 -12.79039 -12.63774 -12.38993 -12.26324 -12.22123 -12.02349 -11.86725 -11.54915 -11.49654 -11.46777 -11.23480 -10.78227 -10.47642 -10.42246 -10.38204 -10.27765 -10.17077 -9.89806 -9.61120 -9.15932 -9.12156 -8.93306 -8.69723 -8.58196 -8.15993 -6.08949 -4.08203 1.88786 2.24142 2.45264 2.73364 3.06550 3.20505 3.26409 3.36693 3.53392 3.99632 4.25907 4.33948 4.62399 4.74279 4.94625 5.10834 5.12857 5.18488 5.18753 5.26900 5.41764 5.43778 5.53858 5.62975 5.64454 5.71309 5.77261 5.79137 5.85831 5.89896 5.94312 6.03614 6.11365 6.14666 6.17741 6.28365 6.39676 6.44231 6.48746 6.55696 6.63993 6.73014 6.78470 6.89635 7.17070 7.20355 7.47023 7.58202 7.67722 8.49690 9.09726 9.46912 9.50410 11.03942 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.004653 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.796749 B = 6015.856672 C = 6842.928149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.204 3.796 4 H 0.102 0.898 5 C -0.196 4.196 6 N -0.450 5.450 7 C 0.031 3.969 8 C 0.317 3.683 9 N -0.316 5.316 10 N -0.272 5.272 11 C 0.244 3.756 12 C 0.121 3.879 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.499 4.499 16 H 0.098 0.902 17 C 0.076 3.924 18 N -0.889 5.889 19 Si 0.877 3.123 20 H -0.284 1.284 21 H -0.302 1.302 22 H -0.253 1.253 23 N -0.464 5.464 24 C 0.143 3.857 25 C -0.147 4.147 26 C -0.152 4.152 27 C -0.127 4.127 28 H 0.217 0.783 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.265 0.735 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 -3.305 -3.148 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.097 3.903 4 H 0.120 0.880 5 C -0.255 4.255 6 N -0.174 5.174 7 C -0.117 4.117 8 C -0.039 4.039 9 N -0.160 5.160 10 N -0.109 5.109 11 C -0.022 4.022 12 C 0.117 3.883 13 C -0.204 4.204 14 C -0.210 4.210 15 C -0.537 4.537 16 H 0.116 0.884 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.709 3.291 20 H -0.211 1.211 21 H -0.230 1.230 22 H -0.179 1.179 23 N -0.157 5.157 24 C 0.020 3.980 25 C -0.148 4.148 26 C -0.190 4.190 27 C -0.184 4.184 28 H 0.234 0.766 29 H 0.077 0.923 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.786 -2.673 -2.393 20.108 hybrid contribution -0.439 -0.705 -1.482 1.699 sum -20.224 -3.378 -3.875 20.867 Atomic orbital electron populations 1.24811 0.95681 0.99717 1.01754 1.22686 0.93658 1.00602 0.99579 1.18510 0.84171 0.89205 0.98448 0.87992 1.22848 1.06458 1.01326 0.94861 1.58716 1.02996 1.06340 1.49319 1.22490 1.00932 0.94393 0.93848 1.22015 0.90105 1.01734 0.90031 1.74457 0.96643 1.22033 1.22862 1.74203 1.11806 1.15807 1.09129 1.25453 0.83499 0.97496 0.95784 1.17176 0.88709 0.91784 0.90636 1.22606 1.01722 0.97335 0.98750 1.22485 0.99150 1.02058 0.97349 1.20784 0.86298 1.43982 1.02664 0.88439 1.24932 0.95606 0.94818 0.97304 1.69881 0.97859 1.49155 1.35736 0.87393 0.76227 0.78724 0.86716 1.21135 1.23030 1.17909 1.46343 1.07100 1.41779 1.20446 1.20872 0.99859 0.90914 0.86322 1.21747 0.95592 0.95701 1.01788 1.23721 0.94754 1.01332 0.99176 1.21017 1.00937 0.95543 1.00864 0.76600 0.92327 0.86502 0.92215 0.93473 0.90576 0.91127 0.95003 0.91223 0.93152 0.91861 0.92790 0.94905 0.92494 0.87337 0.89375 0.88322 0.88095 0.91127 0.90845 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 19.25 29.55 0.57 -1.37 16 2 C -0.16 -1.93 11.52 -37.12 -0.43 -2.35 16 3 C 0.20 2.68 2.78 -70.50 -0.20 2.49 16 4 H 0.10 1.41 8.11 -51.93 -0.42 0.99 16 5 C -0.20 -2.63 8.44 37.16 0.31 -2.31 16 6 N -0.45 -6.22 4.51 -177.98 -0.80 -7.03 16 7 C 0.03 0.38 8.18 60.06 0.49 0.87 16 8 C 0.32 5.46 6.18 -318.88 -1.97 3.49 16 9 N -0.32 -6.44 9.03 30.31 0.27 -6.17 16 10 N -0.27 -6.40 11.03 32.99 0.36 -6.03 16 11 C 0.24 5.19 6.23 -154.01 -0.96 4.24 16 12 C 0.12 2.66 0.47 -156.81 -0.07 2.58 16 13 C -0.15 -2.86 6.48 37.16 0.24 -2.62 16 14 C -0.15 -3.11 7.33 37.16 0.27 -2.84 16 15 C -0.50 -13.55 8.49 -34.44 -0.29 -13.84 16 16 H 0.10 3.02 7.25 -52.49 -0.38 2.64 16 17 C 0.08 2.08 5.31 -17.82 -0.09 1.99 16 18 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 19 Si 0.88 20.38 22.61 -169.99 -3.84 16.54 16 20 H -0.28 -6.57 7.08 56.52 0.40 -6.17 16 21 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.25 -5.22 4.74 56.52 0.27 -4.96 16 23 N -0.46 -8.03 2.90 -115.37 -0.33 -8.36 16 24 C 0.14 1.96 5.59 -5.20 -0.03 1.94 16 25 C -0.15 -1.75 4.74 -101.06 -0.48 -2.23 16 26 C -0.15 -1.52 12.33 29.02 0.36 -1.16 16 27 C -0.13 -1.51 9.99 36.01 0.36 -1.15 16 28 H 0.22 1.27 7.80 -54.09 -0.42 0.85 16 29 H 0.06 0.75 6.24 -51.93 -0.32 0.43 16 30 H 0.12 1.91 5.16 -51.93 -0.27 1.64 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.61 5.94 -51.93 -0.31 0.30 16 33 H 0.08 0.81 7.38 -51.93 -0.38 0.43 16 34 H 0.07 0.90 6.81 -51.93 -0.35 0.55 16 35 H 0.03 0.52 5.76 -51.93 -0.30 0.22 16 36 H 0.07 1.45 4.86 -51.93 -0.25 1.20 16 37 H 0.05 0.96 5.65 -51.93 -0.29 0.67 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 1.12 2.39 -51.93 -0.12 1.00 16 40 H 0.03 0.55 6.48 -51.93 -0.34 0.22 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.11 1.51 3.92 -51.92 -0.20 1.30 16 43 H 0.09 1.09 7.84 -51.93 -0.41 0.68 16 44 H 0.10 0.86 8.02 -52.48 -0.42 0.44 16 45 H 0.10 0.99 7.87 -52.49 -0.41 0.57 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.06 5.27 -51.93 -0.27 0.79 16 48 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -30.92 359.79 -6.91 -37.83 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.84 Total: 5.84 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -1.92 Total: -12.28 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.27 Total: -53.34 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -3.84 Total: 16.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.92 -6.91 -37.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263329999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.571 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds