Wall clock time and date at job start Tue Mar 31 2020 11:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47198 * 135.38617 * 3 2 1 5 5 C 1.52998 * 109.46906 * 255.38277 * 3 2 1 6 6 N 1.46897 * 109.47367 * 15.38659 * 3 2 1 7 7 C 1.46900 * 110.99888 * 298.95692 * 6 3 2 8 8 C 1.38579 * 111.00223 * 175.00029 * 6 3 2 9 9 N 1.31221 * 126.47289 * 44.54648 * 8 6 3 10 10 N 1.28528 * 109.85855 * 180.26314 * 9 8 6 11 11 C 1.30293 * 110.05561 * 359.74182 * 10 9 8 12 12 C 1.50700 * 126.34921 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47079 * 127.97868 * 12 11 10 14 14 C 1.53005 * 109.47057 * 247.97710 * 12 11 10 15 15 C 1.50692 * 109.46907 * 7.97716 * 12 11 10 16 16 H 1.07999 * 120.00029 * 5.31196 * 15 12 11 17 17 C 1.37886 * 120.00074 * 185.31218 * 15 12 11 18 18 N 1.31511 * 120.00004 * 187.85822 * 17 15 12 19 19 Si 1.86796 * 119.99613 * 7.85653 * 17 15 12 20 20 H 1.48495 * 109.47461 * 85.62787 * 19 17 15 21 21 H 1.48506 * 109.47111 * 205.62653 * 19 17 15 22 22 H 1.48507 * 109.47483 * 325.62529 * 19 17 15 23 23 N 1.36449 * 126.47221 * 224.38160 * 8 6 3 24 24 C 1.46498 * 127.13855 * 0.02562 * 23 8 6 25 25 C 1.50695 * 109.47510 * 297.31813 * 24 23 8 26 26 C 1.30994 * 120.00160 * 106.13450 * 25 24 23 27 27 C 1.50706 * 119.99907 * 286.13773 * 25 24 23 28 28 H 4.18748 * 15.03857 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.46912 * 60.00527 * 5 3 2 30 30 H 1.09005 * 109.46689 * 179.97438 * 5 3 2 31 31 H 1.08999 * 109.47331 * 299.99915 * 5 3 2 32 32 H 1.09002 * 109.46765 * 306.75716 * 7 6 3 33 33 H 1.08994 * 109.47368 * 66.76040 * 7 6 3 34 34 H 1.09007 * 109.46802 * 186.76884 * 7 6 3 35 35 H 1.09004 * 109.47250 * 81.93509 * 13 12 11 36 36 H 1.09000 * 109.46731 * 201.92959 * 13 12 11 37 37 H 1.08997 * 109.47236 * 321.93405 * 13 12 11 38 38 H 1.09004 * 109.46641 * 66.43550 * 14 12 11 39 39 H 1.08997 * 109.46801 * 186.43646 * 14 12 11 40 40 H 1.08997 * 109.47090 * 306.43349 * 14 12 11 41 41 H 0.97000 * 119.99877 * 179.97438 * 18 17 15 42 42 H 1.09007 * 109.47296 * 177.31286 * 24 23 8 43 43 H 1.09001 * 109.46869 * 57.31667 * 24 23 8 44 44 H 1.08003 * 120.00108 * 187.50690 * 26 25 24 45 45 H 1.07998 * 120.00121 * 7.22644 * 26 25 24 46 46 H 1.09007 * 109.46565 * 269.89343 * 27 25 24 47 47 H 1.09004 * 109.47012 * 29.88693 * 27 25 24 48 48 H 1.08994 * 109.47187 * 149.88935 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0091 0.7324 -0.7218 5 6 3.1558 0.3649 1.3958 6 7 3.1364 -1.3344 -0.3675 7 6 2.6863 -2.3449 0.5991 8 6 4.5170 -1.3411 -0.4864 9 7 5.3738 -0.7890 0.3400 10 7 6.5729 -0.9838 -0.0797 11 6 6.5527 -1.6707 -1.1867 12 6 7.7512 -2.1043 -1.9909 13 6 7.6723 -3.6097 -2.2526 14 6 7.7687 -1.3550 -3.3247 15 6 9.0102 -1.7932 -1.2234 16 1 8.9475 -1.4077 -0.2165 17 6 10.2423 -2.0007 -1.8067 18 7 11.3381 -1.8780 -1.0901 19 14 10.3547 -2.4561 -3.6148 20 1 10.3467 -1.2202 -4.4380 21 1 11.6134 -3.2054 -3.8592 22 1 9.1936 -3.3048 -3.9847 23 7 5.2424 -1.9257 -1.4834 24 6 4.7246 -2.6670 -2.6360 25 6 3.9894 -3.8919 -2.1564 26 6 2.6807 -3.9292 -2.1999 27 6 4.7598 -5.0740 -1.6269 28 1 -1.0500 -0.0009 0.0002 29 1 2.7929 -0.3668 2.1175 30 1 4.2459 0.3649 1.3959 31 1 2.7921 1.3556 1.6684 32 1 2.9620 -2.0324 1.6063 33 1 1.6035 -2.4519 0.5354 34 1 3.1598 -3.3004 0.3728 35 1 7.0158 -3.7968 -3.1024 36 1 8.6688 -3.9930 -2.4720 37 1 7.2760 -4.1117 -1.3700 38 1 7.9396 -0.2938 -3.1431 39 1 8.5675 -1.7495 -3.9526 40 1 6.8113 -1.4878 -3.8286 41 1 12.2048 -2.0244 -1.5003 42 1 5.5536 -2.9683 -3.2765 43 1 4.0422 -2.0313 -3.2000 44 1 2.1486 -4.7526 -1.7466 45 1 2.1336 -3.1344 -2.6849 46 1 4.9866 -5.7563 -2.4461 47 1 5.6891 -4.7286 -1.1738 48 1 4.1609 -5.5919 -0.8778 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263329999.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:09 Heat of formation + Delta-G solvation = 182.426427 kcal Electronic energy + Delta-G solvation = -28405.072432 eV Core-core repulsion = 24886.074729 eV Total energy + Delta-G solvation = -3518.997703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.99620 -39.63233 -38.24978 -37.30129 -34.40892 -34.13954 -33.54473 -30.99740 -30.33258 -28.73737 -28.17704 -27.72126 -27.26251 -26.86435 -24.72000 -23.88888 -21.79544 -21.17258 -19.63582 -18.88338 -18.31502 -17.90069 -17.43352 -17.17175 -16.93658 -16.05235 -16.00881 -15.48871 -15.31795 -15.20134 -14.88147 -14.67798 -14.29071 -14.11029 -13.95798 -13.84982 -13.73155 -13.55807 -13.11724 -13.02801 -12.93776 -12.66118 -12.54273 -12.42882 -12.24143 -12.14432 -11.84279 -11.79923 -11.74023 -11.34463 -11.14741 -10.93970 -10.87529 -10.67933 -10.60904 -10.08058 -10.00956 -9.60591 -8.22125 -6.26759 0.80902 0.94694 1.35515 1.38731 1.47784 1.51744 1.93198 1.94782 2.04284 2.36748 2.91286 3.11495 3.40053 3.53775 3.60654 3.80474 3.91810 4.06479 4.10402 4.14587 4.23821 4.34189 4.41870 4.47995 4.53340 4.57894 4.63426 4.65907 4.70097 4.73314 4.79779 4.80672 4.88187 4.93600 4.98010 5.03369 5.08525 5.13851 5.15900 5.26756 5.42315 5.58474 5.59591 5.64538 5.67611 5.74083 5.90663 6.29210 6.44816 6.70149 6.85060 7.35534 7.94465 8.95438 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.004653 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.796749 B = 6015.856672 C = 6842.928149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.213 4.213 3 C 0.207 3.793 4 H 0.089 0.911 5 C -0.190 4.190 6 N -0.437 5.437 7 C 0.034 3.966 8 C 0.338 3.662 9 N -0.345 5.345 10 N -0.330 5.330 11 C 0.231 3.769 12 C 0.119 3.881 13 C -0.140 4.140 14 C -0.150 4.150 15 C -0.503 4.503 16 H 0.039 0.961 17 C 0.016 3.984 18 N -0.949 5.949 19 Si 0.939 3.061 20 H -0.278 1.278 21 H -0.310 1.310 22 H -0.203 1.203 23 N -0.454 5.454 24 C 0.134 3.866 25 C -0.170 4.170 26 C -0.124 4.124 27 C -0.124 4.124 28 H 0.255 0.745 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.265 0.735 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.041 0.959 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.148 -4.915 -5.979 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.214 4.214 3 C 0.100 3.900 4 H 0.107 0.893 5 C -0.249 4.249 6 N -0.162 5.162 7 C -0.113 4.113 8 C -0.019 4.019 9 N -0.188 5.188 10 N -0.167 5.167 11 C -0.037 4.037 12 C 0.115 3.885 13 C -0.198 4.198 14 C -0.208 4.208 15 C -0.541 4.541 16 H 0.057 0.943 17 C -0.181 4.181 18 N -0.588 5.588 19 Si 0.767 3.233 20 H -0.205 1.205 21 H -0.239 1.239 22 H -0.126 1.126 23 N -0.146 5.146 24 C 0.014 3.986 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.180 4.180 28 H 0.271 0.729 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.127 0.873 46 H 0.102 0.898 47 H 0.060 0.940 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.622 -4.293 -5.233 25.536 hybrid contribution 0.819 -0.138 -0.436 0.938 sum -23.804 -4.432 -5.669 24.868 Atomic orbital electron populations 1.25667 0.96273 0.96751 0.98785 1.22406 0.93385 1.03325 1.02284 1.18331 0.85862 0.88329 0.97489 0.89349 1.22718 1.04249 1.02246 0.95680 1.58989 1.00277 1.07284 1.49667 1.22529 1.02378 0.93566 0.92836 1.22393 0.91261 0.99342 0.88913 1.74450 0.96236 1.23835 1.24323 1.74111 1.13904 1.17715 1.10995 1.25119 0.84941 0.98077 0.95613 1.17076 0.86648 0.93791 0.90955 1.22480 1.01889 0.94856 1.00526 1.22399 1.01418 1.00589 0.96348 1.20910 0.89235 1.42974 1.01001 0.94261 1.25827 0.94745 0.94791 1.02699 1.70072 0.98661 1.51744 1.38361 0.86386 0.77558 0.79348 0.80016 1.20528 1.23906 1.12618 1.46436 1.05542 1.41488 1.21166 1.21206 1.00444 0.91846 0.85130 1.21600 0.96144 0.95139 1.04159 1.23929 0.93946 1.01532 0.96739 1.20975 0.99641 0.95961 1.01461 0.72883 0.91863 0.89744 0.91069 0.94513 0.87904 0.91348 0.90907 0.92446 0.93302 0.93714 0.92629 0.90787 0.92644 0.87247 0.87444 0.86434 0.87297 0.89763 0.93959 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 19.25 74.32 1.43 -0.85 16 2 C -0.21 -4.34 11.52 31.13 0.36 -3.99 16 3 C 0.21 5.23 2.78 43.11 0.12 5.35 16 4 H 0.09 2.43 8.11 -2.38 -0.02 2.41 16 5 C -0.19 -5.13 8.44 71.98 0.61 -4.52 16 6 N -0.44 -11.39 4.51 -717.00 -3.23 -14.62 16 7 C 0.03 0.76 8.18 127.69 1.04 1.81 16 8 C 0.34 11.60 6.18 260.11 1.61 13.21 16 9 N -0.35 -14.78 9.03 -58.01 -0.52 -15.30 16 10 N -0.33 -16.51 11.03 -49.53 -0.55 -17.05 16 11 C 0.23 10.06 6.23 137.64 0.86 10.92 16 12 C 0.12 5.26 0.47 -53.67 -0.03 5.24 16 13 C -0.14 -5.25 6.48 71.98 0.47 -4.79 16 14 C -0.15 -5.85 7.33 71.98 0.53 -5.33 16 15 C -0.50 -28.86 8.49 25.60 0.22 -28.64 16 16 H 0.04 2.66 7.25 -2.91 -0.02 2.64 16 17 C 0.02 0.92 5.31 84.66 0.45 1.37 16 18 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 19 Si 0.94 42.00 22.61 68.60 1.55 43.55 16 20 H -0.28 -12.16 7.08 99.48 0.70 -11.45 16 21 H -0.31 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.20 -7.43 4.74 99.48 0.47 -6.96 16 23 N -0.45 -15.32 2.90 -518.91 -1.51 -16.83 16 24 C 0.13 3.27 5.59 85.63 0.48 3.75 16 25 C -0.17 -3.41 4.74 -16.48 -0.08 -3.49 16 26 C -0.12 -1.89 12.33 67.79 0.84 -1.05 16 27 C -0.12 -2.60 9.99 71.24 0.71 -1.89 16 28 H 0.25 1.40 7.80 -4.42 -0.03 1.37 16 29 H 0.06 1.60 6.24 -2.39 -0.01 1.59 16 30 H 0.08 2.91 5.16 -2.38 -0.01 2.90 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.04 0.92 5.94 -2.39 -0.01 0.90 16 33 H 0.10 1.80 7.38 -2.39 -0.02 1.78 16 34 H 0.07 1.58 6.81 -2.38 -0.02 1.57 16 35 H 0.07 2.12 5.76 -2.39 -0.01 2.10 16 36 H 0.06 2.29 4.86 -2.39 -0.01 2.27 16 37 H 0.05 1.85 5.65 -2.39 -0.01 1.83 16 38 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 39 H 0.06 2.14 2.39 -2.39 -0.01 2.14 16 40 H 0.07 2.25 6.48 -2.39 -0.02 2.24 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.11 2.60 3.92 -2.38 -0.01 2.59 16 43 H 0.11 2.21 7.84 -2.39 -0.02 2.19 16 44 H 0.12 1.41 8.02 -2.91 -0.02 1.39 16 45 H 0.11 1.55 7.87 -2.91 -0.02 1.52 16 46 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.04 1.16 5.27 -2.38 -0.01 1.15 16 48 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 Total: -1.00 -75.45 359.79 6.39 -69.06 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.74 Total: 23.84 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 9.61 Total: -12.91 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.51 Total: -123.55 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.55 Total: 43.55 kcal Total: -75.45 6.39 -69.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263329999.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.487 kcal (2) G-P(sol) polarization free energy of solvation -75.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds