Wall clock time and date at job start Tue Mar 31 2020 11:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08993 * 109.46671 * 148.69595 * 3 2 1 5 5 C 1.52996 * 109.47256 * 268.69890 * 3 2 1 6 6 N 1.46906 * 109.46788 * 28.70017 * 3 2 1 7 7 C 1.46896 * 111.00338 * 56.04652 * 6 3 2 8 8 C 1.38580 * 110.99718 * 180.02562 * 6 3 2 9 9 N 1.31227 * 126.46807 * 308.01729 * 8 6 3 10 10 N 1.28528 * 109.85494 * 179.73005 * 9 8 6 11 11 C 1.30303 * 110.05553 * 0.45142 * 10 9 8 12 12 C 1.50698 * 126.34606 * 179.81799 * 11 10 9 13 13 H 1.09005 * 109.46699 * 179.69130 * 12 11 10 14 14 C 1.52997 * 109.47236 * 299.69305 * 12 11 10 15 15 C 1.53001 * 109.47197 * 59.69607 * 12 11 10 16 16 C 1.50699 * 109.47426 * 174.99791 * 15 12 11 17 17 H 1.07999 * 119.99741 * 359.97438 * 16 15 12 18 18 C 1.37868 * 120.00093 * 179.97438 * 16 15 12 19 19 N 1.31523 * 120.00265 * 0.27627 * 18 16 15 20 20 Si 1.86807 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46920 * 90.00185 * 20 18 16 22 22 H 1.48502 * 109.47085 * 209.99947 * 20 18 16 23 23 H 1.48491 * 109.47140 * 330.00270 * 20 18 16 24 24 N 1.36448 * 126.47450 * 128.01581 * 8 6 3 25 25 C 1.46496 * 127.13675 * 0.02562 * 24 8 6 26 26 C 1.50699 * 109.46925 * 275.43418 * 25 24 8 27 27 C 1.31000 * 120.00024 * 94.99909 * 26 25 24 28 28 C 1.50703 * 120.00084 * 274.99872 * 26 25 24 29 29 H 4.18732 * 15.03851 * 0.02562 * 4 2 1 30 30 H 1.08998 * 109.47356 * 179.97438 * 5 3 2 31 31 H 1.09005 * 109.47110 * 300.00176 * 5 3 2 32 32 H 1.09003 * 109.47430 * 60.00142 * 5 3 2 33 33 H 1.09001 * 109.47304 * 180.97540 * 7 6 3 34 34 H 1.09003 * 109.46759 * 300.97661 * 7 6 3 35 35 H 1.08998 * 109.47267 * 60.96691 * 7 6 3 36 36 H 1.09002 * 109.46633 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47104 * 299.99607 * 14 12 11 38 38 H 1.08995 * 109.47325 * 60.00129 * 14 12 11 39 39 H 1.08996 * 109.47443 * 54.99163 * 15 12 11 40 40 H 1.09005 * 109.46721 * 294.99736 * 15 12 11 41 41 H 0.96999 * 119.99655 * 359.72400 * 19 18 16 42 42 H 1.08997 * 109.47737 * 35.43512 * 25 24 8 43 43 H 1.09000 * 109.47104 * 155.43582 * 25 24 8 44 44 H 1.08004 * 120.00006 * 179.97438 * 27 26 25 45 45 H 1.07994 * 120.00085 * 0.02562 * 27 26 25 46 46 H 1.09006 * 109.46992 * 0.02562 * 28 26 25 47 47 H 1.09001 * 109.46683 * 120.00036 * 28 26 25 48 48 H 1.08999 * 109.47624 * 239.99985 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.8788 -0.5339 5 6 3.1560 0.0336 1.4421 6 7 3.1361 -1.2140 -0.6651 7 6 2.5895 -1.3273 -2.0239 8 6 4.5215 -1.2461 -0.6824 9 7 5.3184 -0.2950 -1.1092 10 7 6.5437 -0.6587 -0.9741 11 6 6.6006 -1.8574 -0.4662 12 6 7.8520 -2.6386 -0.1585 13 1 7.5815 -3.6064 0.2636 14 6 8.6513 -2.8491 -1.4460 15 6 8.7029 -1.8626 0.8489 16 6 9.8921 -2.6968 1.2499 17 1 10.0274 -3.6820 0.8287 18 6 10.8075 -2.2022 2.1545 19 7 10.6399 -1.0045 2.6716 20 14 12.2814 -3.2365 2.6522 21 1 13.4137 -2.9595 1.7322 22 1 12.6783 -2.8962 4.0421 23 1 11.9238 -4.6758 2.5778 24 7 5.3144 -2.2726 -0.2588 25 6 4.8782 -3.5540 0.3013 26 6 4.6288 -3.3973 1.7793 27 6 3.4190 -3.1503 2.2168 28 6 5.7712 -3.5247 2.7539 29 1 -1.0500 -0.0005 0.0009 30 1 4.2460 0.0337 1.4421 31 1 2.7922 0.9349 1.9356 32 1 2.7931 -0.8446 1.9760 33 1 2.9547 -2.2439 -2.4872 34 1 1.5008 -1.3528 -1.9765 35 1 2.9073 -0.4692 -2.6161 36 1 9.5563 -3.4145 -1.2234 37 1 8.0452 -3.4019 -2.1636 38 1 8.9218 -1.8813 -1.8681 39 1 8.1044 -1.6353 1.7311 40 1 9.0473 -0.9337 0.3943 41 1 9.8744 -0.4676 2.4135 42 1 3.9588 -3.8716 -0.1906 43 1 5.6534 -4.3033 0.1411 44 1 3.2402 -3.0384 3.2761 45 1 2.6003 -3.0595 1.5185 46 1 6.6929 -3.7285 2.2087 47 1 5.8778 -2.5946 3.3122 48 1 5.5693 -4.3426 3.4456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263337990.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:21 Heat of formation + Delta-G solvation = 132.126236 kcal Electronic energy + Delta-G solvation = -27743.872748 eV Core-core repulsion = 24222.693865 eV Total energy + Delta-G solvation = -3521.178883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.15153 -39.50413 -37.96354 -37.12016 -34.65300 -34.57159 -33.83302 -31.66902 -30.29426 -28.60573 -28.50813 -27.95670 -26.56768 -25.79370 -25.06136 -23.89618 -22.05861 -20.98890 -19.74603 -19.06086 -18.81520 -18.27042 -17.62624 -17.13916 -16.46634 -16.19935 -15.84906 -15.63043 -15.53495 -15.37345 -15.11735 -14.51948 -14.23407 -14.18517 -13.96329 -13.69648 -13.47007 -13.17168 -13.08000 -12.99831 -12.89540 -12.84501 -12.72647 -12.68545 -12.45837 -12.40013 -12.07120 -11.91217 -11.80303 -11.70723 -11.45840 -11.24839 -11.07683 -10.70893 -10.51022 -10.22985 -10.08205 -9.88182 -8.62265 -6.33087 0.53498 0.85962 1.35112 1.56343 1.65537 1.70409 1.81594 1.85555 1.92195 2.60889 2.74662 3.22955 3.26869 3.34867 3.53525 3.66706 3.77475 3.83363 4.01310 4.07853 4.15186 4.23872 4.29519 4.37817 4.43480 4.47284 4.51034 4.56949 4.61719 4.71167 4.73165 4.76996 4.91173 4.93168 4.97355 4.99708 5.03876 5.05356 5.07585 5.23558 5.27744 5.43890 5.47134 5.53320 5.54660 5.76706 5.99749 6.12743 6.23568 6.58765 6.62982 7.49877 7.65352 8.77237 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018875 B = 0.003778 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.088646 B = 7408.611852 C = 7789.295935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.221 4.221 3 C 0.208 3.792 4 H 0.061 0.939 5 C -0.137 4.137 6 N -0.447 5.447 7 C 0.033 3.967 8 C 0.350 3.650 9 N -0.348 5.348 10 N -0.327 5.327 11 C 0.206 3.794 12 C 0.015 3.985 13 H 0.092 0.908 14 C -0.119 4.119 15 C 0.042 3.958 16 C -0.598 4.598 17 H 0.067 0.933 18 C -0.040 4.040 19 N -0.941 5.941 20 Si 1.118 2.882 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.259 1.259 24 N -0.454 5.454 25 C 0.143 3.857 26 C -0.166 4.166 27 C -0.136 4.136 28 C -0.117 4.117 29 H 0.258 0.742 30 H 0.025 0.975 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.039 0.961 39 H -0.023 1.023 40 H -0.018 1.018 41 H 0.250 0.750 42 H 0.125 0.875 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.049 0.951 47 H 0.041 0.959 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.681 -7.661 -4.895 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.222 4.222 3 C 0.101 3.899 4 H 0.079 0.921 5 C -0.194 4.194 6 N -0.173 5.173 7 C -0.113 4.113 8 C -0.007 4.007 9 N -0.192 5.192 10 N -0.167 5.167 11 C -0.063 4.063 12 C -0.005 4.005 13 H 0.110 0.890 14 C -0.177 4.177 15 C 0.004 3.996 16 C -0.636 4.636 17 H 0.085 0.915 18 C -0.237 4.237 19 N -0.579 5.579 20 Si 0.939 3.061 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.184 1.184 24 N -0.145 5.145 25 C 0.022 3.978 26 C -0.167 4.167 27 C -0.174 4.174 28 C -0.174 4.174 29 H 0.274 0.726 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.059 0.941 39 H -0.005 1.005 40 H 0.000 1.000 41 H 0.060 0.940 42 H 0.143 0.857 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.058 -6.786 -4.286 22.536 hybrid contribution -1.251 0.300 -0.683 1.457 sum -22.309 -6.486 -4.969 23.758 Atomic orbital electron populations 1.25712 0.96233 0.96734 0.97551 1.22247 0.93185 1.03520 1.03204 1.18306 0.86149 0.89694 0.95709 0.92106 1.21824 0.99144 1.04065 0.94389 1.58924 0.97894 1.39339 1.21151 1.22538 1.01900 1.01865 0.85046 1.22245 0.91127 0.86757 1.00611 1.74443 0.97093 1.25320 1.22339 1.73957 1.12501 1.10592 1.19620 1.25303 0.86881 0.93800 1.00297 1.19619 0.86598 0.96479 0.97851 0.88959 1.21603 1.00071 1.01476 0.94595 1.18946 0.94059 0.94706 0.91925 1.22334 1.09354 1.03848 1.28087 0.91486 1.27387 1.04490 0.97702 0.94073 1.70884 1.31070 1.11449 1.44512 0.82942 0.72349 0.74594 0.76206 1.20161 1.21529 1.18366 1.46552 1.05352 1.16251 1.46328 1.21166 1.03548 0.81306 0.91745 1.21725 0.96568 1.04475 0.93915 1.23979 0.95907 0.95294 1.02222 1.20805 0.96526 1.01591 0.98435 0.72626 0.95580 0.90149 0.89948 0.90361 0.87529 0.94865 0.90756 0.91681 0.94130 1.00460 0.99995 0.94021 0.85670 0.87359 0.87084 0.86448 0.93225 0.94026 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 19.25 74.32 1.43 -0.45 16 2 C -0.22 -4.22 11.13 31.13 0.35 -3.88 16 3 C 0.21 5.12 2.42 43.11 0.10 5.22 16 4 H 0.06 1.74 7.99 -2.39 -0.02 1.72 16 5 C -0.14 -3.54 9.02 71.98 0.65 -2.89 16 6 N -0.45 -11.03 4.65 -717.01 -3.33 -14.37 16 7 C 0.03 0.67 9.19 127.69 1.17 1.84 16 8 C 0.35 11.37 5.13 260.11 1.33 12.70 16 9 N -0.35 -14.17 11.95 -58.00 -0.69 -14.87 16 10 N -0.33 -14.86 12.18 -49.53 -0.60 -15.46 16 11 C 0.21 8.27 6.58 137.64 0.91 9.17 16 12 C 0.02 0.64 2.65 -11.54 -0.03 0.61 16 13 H 0.09 3.42 5.86 -2.38 -0.01 3.41 16 14 C -0.12 -4.51 8.99 71.98 0.65 -3.86 16 15 C 0.04 2.20 3.74 29.85 0.11 2.31 16 16 C -0.60 -32.70 8.41 25.60 0.22 -32.48 16 17 H 0.07 3.41 7.06 -2.91 -0.02 3.39 16 18 C -0.04 -2.27 5.46 84.65 0.46 -1.80 16 19 N -0.94 -59.59 13.65 21.45 0.29 -59.30 16 20 Si 1.12 49.47 29.90 68.60 2.05 51.52 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 N -0.45 -14.62 2.79 -518.92 -1.45 -16.07 16 25 C 0.14 3.42 6.06 85.63 0.52 3.94 16 26 C -0.17 -4.00 5.63 -16.49 -0.09 -4.10 16 27 C -0.14 -2.68 11.85 67.78 0.80 -1.88 16 28 C -0.12 -3.35 10.05 71.24 0.72 -2.63 16 29 H 0.26 1.02 7.80 -4.42 -0.03 0.98 16 30 H 0.03 0.86 7.22 -2.39 -0.02 0.84 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.08 1.90 5.84 -2.39 -0.01 1.89 16 33 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 34 H 0.11 1.64 6.95 -2.39 -0.02 1.62 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 2.80 6.95 -2.39 -0.02 2.79 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H -0.02 -1.32 8.00 -2.39 -0.02 -1.34 16 40 H -0.02 -1.10 8.01 -2.38 -0.02 -1.12 16 41 H 0.25 16.48 7.22 -92.71 -0.67 15.81 16 42 H 0.13 2.30 7.99 -2.39 -0.02 2.28 16 43 H 0.11 2.41 6.99 -2.39 -0.02 2.39 16 44 H 0.11 1.97 8.05 -2.91 -0.02 1.95 16 45 H 0.12 2.07 7.94 -2.91 -0.02 2.05 16 46 H 0.05 1.65 6.99 -2.38 -0.02 1.63 16 47 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.61 395.85 6.59 -68.03 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 1.03 Total: 18.69 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 9.29 Total: -18.18 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -5.78 Total: -120.06 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -74.61 6.59 -68.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263337990.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.152 kcal (2) G-P(sol) polarization free energy of solvation -74.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds