Wall clock time and date at job start Tue Mar 31 2020 11:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46530 * 135.45901 * 3 2 1 5 5 C 1.53004 * 109.47045 * 255.45269 * 3 2 1 6 6 N 1.46896 * 109.47483 * 15.45189 * 3 2 1 7 7 C 1.46908 * 110.99642 * 56.04531 * 6 3 2 8 8 C 1.38588 * 110.99847 * 179.97438 * 6 3 2 9 9 N 1.31208 * 126.47280 * 308.24884 * 8 6 3 10 10 N 1.28529 * 109.85755 * 180.02562 * 9 8 6 11 11 C 1.30290 * 110.05670 * 0.02562 * 10 9 8 12 12 C 1.50701 * 126.35386 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47691 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.46814 * 60.01879 * 12 11 10 15 15 C 1.53001 * 109.47047 * 300.02452 * 12 11 10 16 16 C 1.50694 * 109.47330 * 184.99640 * 15 12 11 17 17 H 1.08004 * 119.99677 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00030 * 179.97438 * 16 15 12 19 19 N 1.31513 * 120.00270 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99713 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47281 * 60.00334 * 20 18 16 22 22 H 1.48507 * 109.46651 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47444 * 299.99819 * 20 18 16 24 24 N 1.36448 * 126.46836 * 128.56446 * 8 6 3 25 25 C 1.46501 * 127.13953 * 0.02562 * 24 8 6 26 26 C 1.50709 * 109.46784 * 277.50005 * 25 24 8 27 27 C 1.31002 * 119.99304 * 95.00433 * 26 25 24 28 28 C 1.50692 * 120.00164 * 274.99749 * 26 25 24 29 29 H 4.18738 * 15.03840 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.47194 * 300.00471 * 5 3 2 31 31 H 1.08993 * 109.46970 * 60.00279 * 5 3 2 32 32 H 1.08996 * 109.47253 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.46670 * 177.88241 * 7 6 3 34 34 H 1.09000 * 109.47405 * 297.88761 * 7 6 3 35 35 H 1.08999 * 109.46919 * 57.88462 * 7 6 3 36 36 H 1.08996 * 109.46630 * 180.02562 * 14 12 11 37 37 H 1.08993 * 109.46887 * 300.00363 * 14 12 11 38 38 H 1.08998 * 109.46918 * 60.00805 * 14 12 11 39 39 H 1.09000 * 109.46935 * 304.99723 * 15 12 11 40 40 H 1.09003 * 109.47066 * 64.99366 * 15 12 11 41 41 H 0.96994 * 120.00253 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.47330 * 37.50258 * 25 24 8 43 43 H 1.09001 * 109.47537 * 157.50539 * 25 24 8 44 44 H 1.07996 * 120.00792 * 359.97438 * 27 26 25 45 45 H 1.07999 * 119.99350 * 180.02562 * 27 26 25 46 46 H 1.09004 * 109.46832 * 90.00457 * 28 26 25 47 47 H 1.09001 * 109.47484 * 209.99615 * 28 26 25 48 48 H 1.09004 * 109.47388 * 330.00437 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.7333 -0.7209 5 6 3.1559 0.3632 1.3963 6 7 3.1364 -1.3340 -0.3690 7 6 2.5898 -1.7556 -1.6658 8 6 4.5218 -1.3687 -0.3794 9 7 5.3181 -0.5382 -1.0100 10 7 6.5435 -0.8655 -0.8020 11 6 6.6012 -1.9158 -0.0332 12 6 7.8530 -2.6074 0.4420 13 1 7.5831 -3.4559 1.0706 14 6 8.7035 -1.6245 1.2493 15 6 8.6524 -3.1013 -0.7654 16 6 9.8395 -3.8985 -0.2899 17 1 10.0068 -4.0393 0.7677 18 6 10.7114 -4.4491 -1.2051 19 7 10.5074 -4.2782 -2.4930 20 14 12.1825 -5.4380 -0.6156 21 1 11.7111 -6.6024 0.1762 22 1 12.9585 -5.9172 -1.7876 23 1 13.0479 -4.5800 0.2330 24 7 5.3151 -2.2766 0.2595 25 6 4.8795 -3.4035 1.0882 26 6 4.5818 -2.9158 2.4828 27 6 3.3555 -2.6000 2.8184 28 6 5.6948 -2.7916 3.4912 29 1 -1.0500 -0.0003 0.0009 30 1 2.7920 1.3535 1.6701 31 1 2.7929 -0.3693 2.1171 32 1 4.2458 0.3642 1.3962 33 1 2.9982 -2.7304 -1.9325 34 1 1.5040 -1.8227 -1.5980 35 1 2.8619 -1.0265 -2.4290 36 1 9.6090 -2.1246 1.5926 37 1 8.9734 -0.7761 0.6205 38 1 8.1340 -1.2727 2.1095 39 1 8.0176 -3.7314 -1.3884 40 1 8.9981 -2.2464 -1.3467 41 1 11.1210 -4.6652 -3.1369 42 1 3.9804 -3.8447 0.6580 43 1 5.6697 -4.1533 1.1265 44 1 2.5580 -2.6887 2.0957 45 1 3.1423 -2.2501 3.8176 46 1 6.1295 -1.7938 3.4314 47 1 5.2975 -2.9553 4.4929 48 1 6.4624 -3.5357 3.2786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263337991.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:25 Heat of formation + Delta-G solvation = 152.675468 kcal Electronic energy + Delta-G solvation = -27524.094537 eV Core-core repulsion = 24003.806736 eV Total energy + Delta-G solvation = -3520.287802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.67732 -38.38255 -36.81162 -35.19454 -33.55353 -33.03841 -32.14233 -30.73120 -28.83911 -27.56800 -26.96270 -26.86083 -25.46238 -24.11317 -23.97060 -21.97532 -20.75992 -19.34641 -18.62234 -18.12827 -17.09887 -16.58046 -16.40087 -15.71499 -15.19612 -15.05084 -14.64453 -14.55340 -14.27065 -13.74232 -13.49886 -13.39499 -13.11026 -12.82869 -12.48477 -12.37405 -12.07246 -11.98705 -11.85146 -11.82065 -11.73462 -11.51130 -11.29680 -11.10095 -10.92769 -10.90543 -10.73353 -10.51557 -10.48480 -10.26602 -9.95833 -9.83382 -9.56872 -9.27250 -9.13432 -8.83882 -8.38906 -8.35407 -6.00763 -4.04617 1.76884 2.10146 2.31191 2.61449 2.92948 3.29191 3.31855 3.37435 3.38666 3.82674 4.08279 4.43279 4.58727 4.62651 4.79827 4.96173 5.05678 5.10293 5.15150 5.33106 5.34255 5.37207 5.43724 5.45894 5.54849 5.57881 5.62028 5.68688 5.74239 5.75732 5.89459 5.90913 6.00657 6.05345 6.09893 6.24734 6.29340 6.42207 6.53309 6.67119 6.70893 6.81324 6.90935 7.04735 7.34773 7.45370 7.61402 7.77878 7.98245 8.34128 9.00776 9.18535 9.58989 11.10255 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.003583 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.146152 B = 7812.619527 C = 8457.949236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.203 3.797 4 H 0.082 0.918 5 C -0.141 4.141 6 N -0.456 5.456 7 C 0.032 3.968 8 C 0.324 3.676 9 N -0.313 5.313 10 N -0.286 5.286 11 C 0.222 3.778 12 C -0.002 4.002 13 H 0.072 0.928 14 C -0.125 4.125 15 C 0.039 3.961 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 N -0.461 5.461 25 C 0.148 3.852 26 C -0.147 4.147 27 C -0.158 4.158 28 C -0.119 4.119 29 H 0.219 0.781 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 4.298 10.267 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.097 3.903 4 H 0.100 0.900 5 C -0.199 4.199 6 N -0.182 5.182 7 C -0.115 4.115 8 C -0.032 4.032 9 N -0.157 5.157 10 N -0.125 5.125 11 C -0.045 4.045 12 C -0.023 4.023 13 H 0.090 0.910 14 C -0.183 4.183 15 C 0.001 3.999 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.201 1.201 24 N -0.153 5.153 25 C 0.025 3.975 26 C -0.148 4.148 27 C -0.196 4.196 28 C -0.176 4.176 29 H 0.236 0.764 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.824 5.065 9.559 21.711 hybrid contribution 0.271 -1.230 0.337 1.304 sum -18.553 3.835 9.897 21.374 Atomic orbital electron populations 1.24853 0.95694 0.99480 1.01057 1.22580 0.93568 1.00847 1.00187 1.18510 0.84297 0.88555 0.98969 0.90000 1.21865 1.01663 1.01837 0.94514 1.58651 1.00428 1.27244 1.31833 1.22458 1.00430 1.01140 0.87500 1.21910 0.89918 0.92435 0.98974 1.74528 0.97389 1.23380 1.20371 1.74067 1.10881 1.12228 1.15317 1.25659 0.85789 0.95344 0.97688 1.20003 0.86670 0.95407 1.00189 0.90973 1.21671 0.99516 0.99113 0.97996 1.19103 0.93648 0.96620 0.90575 1.21093 1.09191 1.32816 0.92835 0.92384 1.24996 0.97929 0.96424 0.94855 1.69967 1.37455 1.44875 1.00602 0.86675 0.82824 0.80448 0.78147 1.20297 1.21335 1.20143 1.46398 1.06622 1.24197 1.38075 1.20816 1.02400 0.86710 0.87574 1.21805 0.96311 1.01732 0.94989 1.23835 0.96386 0.98108 1.01268 1.20874 0.97050 1.02703 0.96937 0.76435 0.91483 0.91007 0.91758 0.90991 0.90114 0.93600 0.90678 0.92094 0.94938 0.96880 0.94975 0.92858 0.88474 0.87803 0.87557 0.88308 0.91486 0.91739 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.64 19.25 29.55 0.57 -1.08 16 2 C -0.17 -1.81 11.19 -37.12 -0.42 -2.23 16 3 C 0.20 2.46 2.42 -70.50 -0.17 2.29 16 4 H 0.08 1.09 7.99 -51.93 -0.41 0.68 16 5 C -0.14 -1.62 9.02 37.16 0.34 -1.29 16 6 N -0.46 -5.94 4.65 -177.98 -0.83 -6.76 16 7 C 0.03 0.38 9.14 60.07 0.55 0.93 16 8 C 0.32 5.26 5.11 -318.88 -1.63 3.63 16 9 N -0.31 -6.12 11.94 30.31 0.36 -5.76 16 10 N -0.29 -6.18 12.18 32.99 0.40 -5.78 16 11 C 0.22 4.32 6.58 -154.02 -1.01 3.31 16 12 C 0.00 -0.03 2.70 -91.77 -0.25 -0.28 16 13 H 0.07 1.32 6.78 -51.93 -0.35 0.97 16 14 C -0.12 -2.31 8.99 37.16 0.33 -1.97 16 15 C 0.04 0.98 4.43 -27.89 -0.12 0.85 16 16 C -0.52 -13.95 8.41 -34.44 -0.29 -14.24 16 17 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 N -0.46 -7.46 2.79 -115.36 -0.32 -7.78 16 25 C 0.15 1.88 6.17 -5.19 -0.03 1.85 16 26 C -0.15 -1.62 5.63 -101.07 -0.57 -2.19 16 27 C -0.16 -1.53 11.79 29.01 0.34 -1.18 16 28 C -0.12 -1.25 10.03 36.00 0.36 -0.89 16 29 H 0.22 1.06 7.80 -54.09 -0.42 0.64 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.77 5.89 -51.93 -0.31 0.47 16 32 H 0.06 0.89 7.22 -51.93 -0.38 0.52 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.08 0.80 7.07 -51.93 -0.37 0.43 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 42 H 0.10 1.11 7.99 -51.93 -0.41 0.70 16 43 H 0.10 1.32 6.88 -51.93 -0.36 0.97 16 44 H 0.11 1.05 7.99 -52.49 -0.42 0.63 16 45 H 0.10 0.83 8.04 -52.49 -0.42 0.40 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 48 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -31.88 399.22 -8.69 -40.57 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.93 Total: 0.17 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -2.10 Total: -10.91 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.35 Total: -51.89 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.88 -8.69 -40.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263337991.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.246 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds