Wall clock time and date at job start Tue Mar 31 2020 12:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46593 * 200.16026 * 3 2 1 5 5 C 1.46906 * 110.99724 * 60.75892 * 4 3 2 6 6 C 1.53001 * 109.46928 * 199.78242 * 5 4 3 7 7 C 1.38583 * 110.99827 * 184.70766 * 4 3 2 8 8 N 1.31214 * 126.47412 * 236.09132 * 7 4 3 9 9 N 1.28528 * 109.86044 * 179.97438 * 8 7 4 10 10 C 1.30292 * 110.05461 * 359.97438 * 9 8 7 11 11 C 1.50696 * 126.34837 * 180.26222 * 10 9 8 12 12 C 1.53003 * 109.47028 * 269.69233 * 11 10 9 13 13 C 1.53007 * 109.46989 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.46969 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99580 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46812 * 120.00214 * 18 16 14 21 21 H 1.48497 * 109.46998 * 240.00063 * 18 16 14 22 22 N 1.36450 * 126.47136 * 56.05015 * 7 4 3 23 23 C 1.46499 * 127.13809 * 0.05537 * 22 7 4 24 24 C 1.53006 * 109.47097 * 270.00190 * 23 22 7 25 25 C 1.53000 * 117.49548 * 243.62061 * 24 23 22 26 26 C 1.52997 * 117.49792 * 174.99853 * 24 23 22 27 27 H 4.40883 * 5.52075 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47271 * 80.16565 * 3 2 1 29 29 H 1.08998 * 109.47432 * 320.15935 * 3 2 1 30 30 H 1.09002 * 109.46966 * 319.78149 * 5 4 3 31 31 H 1.09004 * 109.47281 * 79.78493 * 5 4 3 32 32 H 1.08997 * 109.46971 * 304.95910 * 6 5 4 33 33 H 1.09005 * 109.46794 * 64.95591 * 6 5 4 34 34 H 1.09000 * 109.47172 * 184.95834 * 6 5 4 35 35 H 1.08998 * 109.47299 * 29.69006 * 11 10 9 36 36 H 1.09000 * 109.47118 * 149.69272 * 11 10 9 37 37 H 1.08998 * 109.46895 * 300.00020 * 12 11 10 38 38 H 1.09000 * 109.47139 * 60.00052 * 12 11 10 39 39 H 1.09005 * 109.46803 * 300.00082 * 13 12 11 40 40 H 1.09000 * 109.47062 * 60.00097 * 13 12 11 41 41 H 0.96993 * 120.00016 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.46999 * 29.99597 * 23 22 7 43 43 H 1.08997 * 109.47235 * 149.99750 * 23 22 7 44 44 H 1.08994 * 115.54790 * 29.32490 * 24 23 22 45 45 H 1.08999 * 117.49877 * 359.97438 * 25 24 23 46 46 H 1.09005 * 117.50009 * 145.01708 * 25 24 23 47 47 H 1.09000 * 117.50026 * 214.97431 * 26 24 23 48 48 H 1.09005 * 117.50132 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3011 0.4774 5 6 2.6786 1.5639 1.8488 6 6 2.7642 3.0643 2.1360 7 6 4.5162 1.3745 0.3910 8 7 5.3462 1.6387 1.3723 9 7 6.5554 1.6257 0.9369 10 6 6.5686 1.3542 -0.3374 11 6 7.7891 1.2419 -1.2141 12 6 8.1109 2.6104 -1.8178 13 6 9.3505 2.4966 -2.7075 14 6 9.6672 3.8443 -3.3027 15 1 9.0466 4.6969 -3.0694 16 6 10.7497 3.9893 -4.1442 17 7 11.5056 2.9511 -4.4279 18 14 11.1426 5.6601 -4.8814 19 1 10.1479 6.6560 -4.4085 20 1 12.5027 6.0802 -4.4583 21 1 11.0901 5.5722 -6.3628 22 7 5.2699 1.1848 -0.7305 23 6 4.7878 0.8661 -2.0767 24 6 4.7124 -0.6528 -2.2451 25 6 5.6231 -1.2933 -3.2946 26 6 4.1178 -1.1904 -3.5483 27 1 -1.0502 -0.0004 -0.0004 28 1 3.0094 -0.1747 -1.0126 29 1 3.0097 -0.7882 0.6584 30 1 1.6463 1.2313 1.9582 31 1 3.3113 1.0227 2.5523 32 1 3.7780 3.4142 1.9413 33 1 2.0656 3.5980 1.4916 34 1 2.5100 3.2495 3.1796 35 1 8.6348 0.9001 -0.6175 36 1 7.5969 0.5277 -2.0147 37 1 7.2652 2.9523 -2.4144 38 1 8.3031 3.3247 -1.0172 39 1 10.1961 2.1548 -2.1104 40 1 9.1588 1.7822 -3.5082 41 1 12.2670 3.0529 -5.0201 42 1 3.7968 1.2970 -2.2193 43 1 5.4738 1.2800 -2.8158 44 1 4.5198 -1.2179 -1.3332 45 1 6.2757 -0.6325 -3.8653 46 1 6.0300 -2.2800 -3.0731 47 1 3.5343 -2.1095 -3.4938 48 1 3.7807 -0.4621 -4.2859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263671567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:45 Heat of formation + Delta-G solvation = 159.865838 kcal Electronic energy + Delta-G solvation = -26673.894579 eV Core-core repulsion = 23153.918575 eV Total energy + Delta-G solvation = -3519.976004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93924 -38.54586 -38.00159 -35.00851 -34.20300 -33.56481 -32.43253 -30.96110 -29.74498 -28.16606 -27.10358 -25.88125 -23.72544 -23.52236 -22.66326 -21.76367 -20.71005 -20.28097 -20.07342 -18.56263 -17.71683 -16.42415 -16.35061 -16.19694 -15.65227 -15.27295 -15.02930 -14.52554 -14.35871 -14.19677 -14.04002 -13.80551 -13.69631 -12.94509 -12.41947 -12.30153 -12.16979 -12.10066 -11.95058 -11.78160 -11.54211 -11.36423 -11.33786 -11.03185 -10.87679 -10.81381 -10.77098 -10.59635 -10.55534 -10.47739 -10.24579 -10.06232 -9.79384 -9.70478 -9.41094 -9.11198 -8.36877 -8.13849 -6.02006 -4.03966 1.73789 2.13771 2.43675 2.46000 3.04855 3.30391 3.38314 3.38727 3.42895 3.55819 3.90012 4.28364 4.42093 4.45142 4.55594 4.65477 4.68142 4.81295 4.81681 4.87619 4.97398 5.09405 5.21663 5.25803 5.34287 5.35767 5.37308 5.39255 5.53482 5.62943 5.71454 5.74331 5.80494 5.85540 5.88049 5.96965 6.04150 6.10670 6.21682 6.46528 6.63280 6.64096 6.76765 7.03100 7.16171 7.21470 7.64094 7.76971 7.97574 8.40258 8.96125 9.02887 9.60390 11.09285 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003148 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.629172 B = 8893.203212 C = 9833.786928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.150 3.850 4 N -0.446 5.446 5 C 0.065 3.935 6 C -0.145 4.145 7 C 0.341 3.659 8 N -0.315 5.315 9 N -0.289 5.289 10 C 0.208 3.792 11 C -0.036 4.036 12 C -0.103 4.103 13 C 0.023 3.977 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 N -0.476 5.476 23 C 0.134 3.866 24 C -0.190 4.190 25 C -0.167 4.167 26 C -0.166 4.166 27 H 0.221 0.779 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.099 0.901 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.132 -10.413 5.868 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.170 5.170 5 C -0.062 4.062 6 C -0.203 4.203 7 C -0.015 4.015 8 N -0.160 5.160 9 N -0.127 5.127 10 C -0.059 4.059 11 C -0.075 4.075 12 C -0.142 4.142 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.171 5.171 23 C 0.011 3.989 24 C -0.209 4.209 25 C -0.204 4.204 26 C -0.204 4.204 27 H 0.238 0.762 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -21.683 -9.762 6.883 24.755 hybrid contribution -0.207 0.076 -1.362 1.380 sum -21.890 -9.686 5.521 24.566 Atomic orbital electron populations 1.24926 0.95789 0.98640 1.00380 1.22399 0.93606 1.01604 1.00956 1.19490 0.85950 0.89154 1.03007 1.58720 1.02327 1.29446 1.26530 1.22150 1.00178 0.99056 0.84789 1.21716 1.03398 0.94142 1.01001 1.22389 0.89845 1.04813 0.84433 1.74544 0.95776 1.22863 1.22787 1.74037 1.12478 1.18861 1.07356 1.25245 0.85361 1.01650 0.93664 1.20354 0.89912 1.01213 0.96052 1.21660 1.00432 0.92792 0.99274 1.19096 0.91241 0.97219 0.93808 1.21261 1.11732 0.95192 1.27569 0.92691 1.25007 0.96210 0.96590 0.96577 1.69964 1.17423 1.29455 1.36613 0.86561 0.78322 0.84461 0.78842 1.19741 1.20956 1.21049 1.46168 1.06918 1.54860 1.09186 1.21560 1.02237 0.93921 0.81159 1.22724 1.08291 0.94707 0.95162 1.23166 0.93184 1.02873 1.01156 1.22995 0.96872 1.03026 0.97487 0.76208 0.86741 0.91386 0.89941 0.91953 0.91253 0.92554 0.91836 0.88533 0.90333 0.93669 0.92423 0.96165 0.96545 0.93049 0.88115 0.87406 0.87364 0.87489 0.88287 0.88302 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 19.25 29.55 0.57 -0.75 16 2 C -0.19 -1.69 11.94 -37.12 -0.44 -2.13 16 3 C 0.15 1.45 4.86 -6.61 -0.03 1.42 16 4 N -0.45 -5.33 4.52 -177.83 -0.80 -6.14 16 5 C 0.06 0.71 5.27 -3.82 -0.02 0.69 16 6 C -0.14 -1.62 10.00 37.16 0.37 -1.25 16 7 C 0.34 5.00 6.74 -318.88 -2.15 2.85 16 8 N -0.32 -5.49 10.03 30.31 0.30 -5.19 16 9 N -0.29 -5.46 12.18 32.99 0.40 -5.06 16 10 C 0.21 3.48 7.32 -154.02 -1.13 2.35 16 11 C -0.04 -0.59 5.43 -27.88 -0.15 -0.74 16 12 C -0.10 -2.07 5.14 -26.73 -0.14 -2.20 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 N -0.48 -6.69 2.81 -114.08 -0.32 -7.01 16 23 C 0.13 1.44 5.27 -4.04 -0.02 1.42 16 24 C -0.19 -1.68 4.30 -90.62 -0.39 -2.07 16 25 C -0.17 -1.45 10.18 -26.73 -0.27 -1.72 16 26 C -0.17 -1.19 10.25 -26.73 -0.27 -1.47 16 27 H 0.22 0.84 7.80 -54.08 -0.42 0.41 16 28 H 0.11 1.03 3.40 -51.93 -0.18 0.85 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.77 6.60 -51.93 -0.34 0.43 16 31 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 32 H 0.07 0.97 6.84 -51.93 -0.35 0.62 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.08 1.16 7.94 -51.93 -0.41 0.74 16 37 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 42 H 0.10 0.98 7.65 -51.93 -0.40 0.58 16 43 H 0.11 1.20 7.63 -51.93 -0.40 0.81 16 44 H 0.11 1.00 7.03 -51.93 -0.37 0.63 16 45 H 0.11 1.02 8.03 -51.93 -0.42 0.60 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 395.21 15.07 5.96 5.96 Total: -1.00 -32.70 395.21 -11.24 -43.94 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.87 Total: -0.91 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -4.63 Total: -16.44 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.32 Total: -49.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.70 -11.24 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263671567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.807 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds