Wall clock time and date at job start Tue Mar 31 2020 12:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46905 * 109.46593 * 200.16026 * 3 2 1 5 5 C 1.46906 * 110.99724 * 60.75892 * 4 3 2 6 6 C 1.53001 * 109.46928 * 199.78242 * 5 4 3 7 7 C 1.38583 * 110.99827 * 184.70766 * 4 3 2 8 8 N 1.31214 * 126.47412 * 236.09132 * 7 4 3 9 9 N 1.28528 * 109.86044 * 179.97438 * 8 7 4 10 10 C 1.30292 * 110.05461 * 359.97438 * 9 8 7 11 11 C 1.50696 * 126.34837 * 180.26222 * 10 9 8 12 12 C 1.53003 * 109.47028 * 269.69233 * 11 10 9 13 13 C 1.53007 * 109.46989 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.46969 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00232 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99580 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47085 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46812 * 120.00214 * 18 16 14 21 21 H 1.48497 * 109.46998 * 240.00063 * 18 16 14 22 22 N 1.36450 * 126.47136 * 56.05015 * 7 4 3 23 23 C 1.46499 * 127.13809 * 0.05537 * 22 7 4 24 24 C 1.53006 * 109.47097 * 270.00190 * 23 22 7 25 25 C 1.53000 * 117.49548 * 243.62061 * 24 23 22 26 26 C 1.52997 * 117.49792 * 174.99853 * 24 23 22 27 27 H 4.40883 * 5.52075 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47271 * 80.16565 * 3 2 1 29 29 H 1.08998 * 109.47432 * 320.15935 * 3 2 1 30 30 H 1.09002 * 109.46966 * 319.78149 * 5 4 3 31 31 H 1.09004 * 109.47281 * 79.78493 * 5 4 3 32 32 H 1.08997 * 109.46971 * 304.95910 * 6 5 4 33 33 H 1.09005 * 109.46794 * 64.95591 * 6 5 4 34 34 H 1.09000 * 109.47172 * 184.95834 * 6 5 4 35 35 H 1.08998 * 109.47299 * 29.69006 * 11 10 9 36 36 H 1.09000 * 109.47118 * 149.69272 * 11 10 9 37 37 H 1.08998 * 109.46895 * 300.00020 * 12 11 10 38 38 H 1.09000 * 109.47139 * 60.00052 * 12 11 10 39 39 H 1.09005 * 109.46803 * 300.00082 * 13 12 11 40 40 H 1.09000 * 109.47062 * 60.00097 * 13 12 11 41 41 H 0.96993 * 120.00016 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.46999 * 29.99597 * 23 22 7 43 43 H 1.08997 * 109.47235 * 149.99750 * 23 22 7 44 44 H 1.08994 * 115.54790 * 29.32490 * 24 23 22 45 45 H 1.08999 * 117.49877 * 359.97438 * 25 24 23 46 46 H 1.09005 * 117.50009 * 145.01708 * 25 24 23 47 47 H 1.09000 * 117.50026 * 214.97431 * 26 24 23 48 48 H 1.09005 * 117.50132 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 1.3011 0.4774 5 6 2.6786 1.5639 1.8488 6 6 2.7642 3.0643 2.1360 7 6 4.5162 1.3745 0.3910 8 7 5.3462 1.6387 1.3723 9 7 6.5554 1.6257 0.9369 10 6 6.5686 1.3542 -0.3374 11 6 7.7891 1.2419 -1.2141 12 6 8.1109 2.6104 -1.8178 13 6 9.3505 2.4966 -2.7075 14 6 9.6672 3.8443 -3.3027 15 1 9.0466 4.6969 -3.0694 16 6 10.7497 3.9893 -4.1442 17 7 11.5056 2.9511 -4.4279 18 14 11.1426 5.6601 -4.8814 19 1 10.1479 6.6560 -4.4085 20 1 12.5027 6.0802 -4.4583 21 1 11.0901 5.5722 -6.3628 22 7 5.2699 1.1848 -0.7305 23 6 4.7878 0.8661 -2.0767 24 6 4.7124 -0.6528 -2.2451 25 6 5.6231 -1.2933 -3.2946 26 6 4.1178 -1.1904 -3.5483 27 1 -1.0502 -0.0004 -0.0004 28 1 3.0094 -0.1747 -1.0126 29 1 3.0097 -0.7882 0.6584 30 1 1.6463 1.2313 1.9582 31 1 3.3113 1.0227 2.5523 32 1 3.7780 3.4142 1.9413 33 1 2.0656 3.5980 1.4916 34 1 2.5100 3.2495 3.1796 35 1 8.6348 0.9001 -0.6175 36 1 7.5969 0.5277 -2.0147 37 1 7.2652 2.9523 -2.4144 38 1 8.3031 3.3247 -1.0172 39 1 10.1961 2.1548 -2.1104 40 1 9.1588 1.7822 -3.5082 41 1 12.2670 3.0529 -5.0201 42 1 3.7968 1.2970 -2.2193 43 1 5.4738 1.2800 -2.8158 44 1 4.5198 -1.2179 -1.3332 45 1 6.2757 -0.6325 -3.8653 46 1 6.0300 -2.2800 -3.0731 47 1 3.5343 -2.1095 -3.4938 48 1 3.7807 -0.4621 -4.2859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263671567.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:44 Heat of formation + Delta-G solvation = 144.869813 kcal Electronic energy + Delta-G solvation = -26674.544855 eV Core-core repulsion = 23153.918575 eV Total energy + Delta-G solvation = -3520.626280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.13946 -39.46374 -38.78278 -36.63520 -35.39946 -34.45761 -34.13343 -31.98884 -31.11980 -29.26071 -28.52058 -26.88044 -25.52206 -24.51098 -23.30235 -22.80916 -22.19758 -21.47319 -21.24668 -19.20153 -18.74209 -18.39159 -17.40723 -17.30560 -16.63704 -16.43076 -16.10745 -15.92132 -15.63940 -15.20265 -15.18322 -14.89166 -14.55641 -14.29996 -13.92995 -13.75192 -13.30834 -13.11636 -13.03428 -12.94891 -12.71706 -12.65299 -12.57153 -12.42445 -12.38802 -12.21783 -11.86512 -11.60161 -11.55870 -11.47408 -11.35273 -11.29125 -11.20790 -11.09706 -10.99221 -10.73220 -10.53800 -9.31568 -8.19059 -6.28752 0.64621 1.08199 1.39424 1.41151 1.53346 1.60481 1.83056 1.87521 2.41777 2.66484 2.72978 3.14531 3.24092 3.34878 3.57131 3.64382 3.79340 3.86598 3.91293 4.00140 4.06607 4.10125 4.16872 4.29129 4.33904 4.38325 4.48573 4.49765 4.52519 4.63525 4.79599 4.83660 4.87719 4.96606 5.02638 5.03299 5.03736 5.08764 5.10334 5.18408 5.23632 5.25213 5.47477 5.52832 5.56627 5.75116 5.86553 6.08898 6.26972 6.61954 6.87015 7.39938 7.70810 8.92509 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003148 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.629172 B = 8893.203212 C = 9833.786928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.229 4.229 3 C 0.153 3.847 4 N -0.446 5.446 5 C 0.066 3.934 6 C -0.140 4.140 7 C 0.356 3.644 8 N -0.346 5.346 9 N -0.324 5.324 10 C 0.200 3.800 11 C -0.022 4.022 12 C -0.085 4.085 13 C 0.030 3.970 14 C -0.542 4.542 15 H 0.053 0.947 16 C 0.005 3.995 17 N -0.928 5.928 18 Si 0.958 3.042 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.275 1.275 22 N -0.471 5.471 23 C 0.130 3.870 24 C -0.193 4.193 25 C -0.179 4.179 26 C -0.143 4.143 27 H 0.254 0.746 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.050 0.950 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.040 0.960 39 H -0.004 1.004 40 H 0.007 0.993 41 H 0.264 0.736 42 H 0.114 0.886 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.915 -10.651 4.991 27.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.229 4.229 3 C 0.028 3.972 4 N -0.170 5.170 5 C -0.060 4.060 6 C -0.198 4.198 7 C -0.001 4.001 8 N -0.191 5.191 9 N -0.163 5.163 10 C -0.069 4.069 11 C -0.061 4.061 12 C -0.124 4.124 13 C -0.008 4.008 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.200 1.200 22 N -0.165 5.165 23 C 0.009 3.991 24 C -0.212 4.212 25 C -0.216 4.216 26 C -0.181 4.181 27 H 0.270 0.730 28 H 0.139 0.861 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.134 0.866 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.489 -10.010 5.997 27.127 hybrid contribution 0.529 0.128 -1.085 1.214 sum -23.960 -9.882 4.912 26.379 Atomic orbital electron populations 1.25758 0.96495 0.96256 0.98145 1.22413 0.93750 1.03747 1.03037 1.19456 0.86929 0.87659 1.03168 1.58856 1.00320 1.30896 1.26976 1.22197 1.01036 0.98715 0.84084 1.21678 1.01449 0.94326 1.02333 1.22662 0.90768 1.02685 0.84024 1.74460 0.95719 1.24830 1.24062 1.73941 1.13725 1.19946 1.08649 1.24995 0.86242 1.02391 0.93247 1.20107 0.90158 0.99402 0.96461 1.21352 0.98472 0.94572 0.97955 1.18963 0.92346 0.95710 0.93738 1.21667 1.12050 0.96326 1.27967 0.92913 1.25864 0.96038 1.00452 0.97002 1.70071 1.17939 1.31584 1.37275 0.85501 0.78116 0.79797 0.78273 1.19113 1.20522 1.20030 1.46268 1.05929 1.54174 1.10177 1.21809 1.02558 0.95509 0.79259 1.22593 1.09538 0.93196 0.95876 1.23191 0.94278 1.02844 1.01297 1.23100 0.95597 1.03521 0.95852 0.72980 0.86148 0.91455 0.87728 0.93127 0.94498 0.91951 0.90085 0.88948 0.88297 0.93084 0.94160 0.98528 0.97467 0.92726 0.86805 0.87847 0.87518 0.88609 0.87897 0.86605 0.87210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 19.25 74.32 1.43 -0.22 16 2 C -0.23 -3.58 11.94 31.13 0.37 -3.21 16 3 C 0.15 2.73 4.86 84.50 0.41 3.14 16 4 N -0.45 -10.25 4.52 -716.53 -3.24 -13.49 16 5 C 0.07 1.38 5.27 86.30 0.45 1.84 16 6 C -0.14 -3.05 10.00 71.98 0.72 -2.33 16 7 C 0.36 10.42 6.74 260.11 1.75 12.17 16 8 N -0.35 -12.39 10.03 -58.01 -0.58 -12.98 16 9 N -0.32 -12.66 12.18 -49.54 -0.60 -13.26 16 10 C 0.20 6.81 7.32 137.64 1.01 7.82 16 11 C -0.02 -0.73 5.43 29.85 0.16 -0.57 16 12 C -0.08 -3.49 5.14 30.60 0.16 -3.33 16 13 C 0.03 1.51 4.97 29.85 0.15 1.66 16 14 C -0.54 -30.71 9.11 25.60 0.23 -30.47 16 15 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 16 C 0.00 0.26 5.46 84.66 0.46 0.72 16 17 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 18 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 N -0.47 -13.16 2.81 -514.85 -1.44 -14.61 16 23 C 0.13 2.66 5.27 86.38 0.46 3.12 16 24 C -0.19 -3.14 4.30 -10.79 -0.05 -3.18 16 25 C -0.18 -2.90 10.18 30.59 0.31 -2.59 16 26 C -0.14 -1.70 10.25 30.59 0.31 -1.39 16 27 H 0.25 0.72 7.80 -4.41 -0.03 0.68 16 28 H 0.12 1.95 3.40 -2.39 -0.01 1.94 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.74 6.60 -2.39 -0.02 1.72 16 31 H 0.05 1.20 7.51 -2.38 -0.02 1.18 16 32 H 0.04 1.05 6.84 -2.39 -0.02 1.03 16 33 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.10 2.91 7.94 -2.39 -0.02 2.89 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.11 2.02 7.65 -2.38 -0.02 2.00 16 43 H 0.10 2.23 7.63 -2.39 -0.02 2.21 16 44 H 0.11 1.82 7.03 -2.39 -0.02 1.80 16 45 H 0.10 1.78 8.03 -2.39 -0.02 1.76 16 46 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -71.72 395.21 5.72 -66.00 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.93 Total: 14.02 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 8.35 Total: -16.83 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -5.58 Total: -109.48 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.72 5.72 -66.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263671567.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.872 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds