Wall clock time and date at job start Tue Mar 31 2020 12:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.92537 * 2 1 4 4 C 1.38082 * 120.07242 * 179.72295 * 3 2 1 5 5 C 1.38936 * 119.92642 * 0.02562 * 4 3 2 6 6 N 1.39670 * 120.07337 * 180.02562 * 5 4 3 7 7 C 1.46961 * 110.99967 * 63.79895 * 6 5 4 8 8 C 1.53053 * 109.36364 * 176.80978 * 7 6 5 9 9 N 1.46959 * 109.36332 * 58.40023 * 8 7 6 10 10 C 1.46905 * 110.99951 * 176.80920 * 9 8 7 11 11 C 1.52998 * 109.46956 * 199.58450 * 10 9 8 12 12 H 1.08993 * 109.47826 * 303.83888 * 11 10 9 13 13 C 1.53005 * 109.46760 * 63.84352 * 11 10 9 14 14 C 1.53006 * 109.46747 * 183.83620 * 11 10 9 15 15 C 1.50699 * 109.46769 * 175.00323 * 14 11 10 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 11 17 17 C 1.37883 * 119.99808 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99904 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47310 * 59.99692 * 19 17 15 21 21 H 1.48506 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47407 * 299.99411 * 19 17 15 23 23 C 1.46954 * 110.88503 * 300.67982 * 9 8 7 24 24 C 1.46963 * 111.00103 * 300.00091 * 6 5 4 25 25 C 1.38889 * 119.84891 * 0.02562 * 5 4 3 26 26 C 1.50702 * 120.03419 * 179.97438 * 25 5 4 27 27 C 1.38124 * 119.92467 * 359.97438 * 25 5 4 28 28 H 1.08999 * 109.47349 * 89.99681 * 1 2 3 29 29 H 1.08999 * 109.46889 * 209.99921 * 1 2 3 30 30 H 1.09001 * 109.46739 * 329.99772 * 1 2 3 31 31 H 1.07999 * 119.96249 * 359.70329 * 3 2 1 32 32 H 1.07994 * 120.03704 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.48769 * 296.77997 * 7 6 5 34 34 H 1.08997 * 109.48658 * 56.84472 * 7 6 5 35 35 H 1.09000 * 109.48866 * 298.43870 * 8 7 6 36 36 H 1.08996 * 109.50724 * 178.37976 * 8 7 6 37 37 H 1.08995 * 109.46854 * 319.58980 * 10 9 8 38 38 H 1.09001 * 109.46430 * 79.58812 * 10 9 8 39 39 H 1.08998 * 109.47201 * 65.38920 * 13 11 10 40 40 H 1.09007 * 109.46543 * 185.38456 * 13 11 10 41 41 H 1.09000 * 109.46981 * 305.37720 * 13 11 10 42 42 H 1.08995 * 109.47123 * 295.00480 * 14 11 10 43 43 H 1.08998 * 109.47161 * 55.00660 * 14 11 10 44 44 H 0.97004 * 119.99984 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.48771 * 299.35436 * 23 9 8 46 46 H 1.08998 * 109.51140 * 179.29680 * 23 9 8 47 47 H 1.08998 * 109.48762 * 303.15513 * 24 6 5 48 48 H 1.08993 * 109.48643 * 63.22043 * 24 6 5 49 49 H 1.08999 * 109.47129 * 89.99629 * 26 25 5 50 50 H 1.08999 * 109.46928 * 209.99317 * 26 25 5 51 51 H 1.09003 * 109.47084 * 329.99620 * 26 25 5 52 52 H 1.08003 * 119.95963 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 0.0058 5 6 4.2740 -0.0001 0.0111 6 7 5.6707 -0.0001 0.0174 7 6 6.1917 0.6078 1.2498 8 6 7.7195 0.5168 1.2540 9 7 8.2516 1.2007 0.0670 10 6 9.7206 1.2007 0.0737 11 6 10.2349 2.2973 -0.8611 12 1 9.8211 2.1482 -1.8583 13 6 9.8028 3.6651 -0.3288 14 6 11.7622 2.2354 -0.9281 15 6 12.2613 3.2332 -1.9412 16 1 11.5595 3.8501 -2.4827 17 6 13.6141 3.3585 -2.1767 18 7 14.4687 2.6077 -1.5169 19 14 14.2328 4.5959 -3.4319 20 1 13.8105 5.9617 -3.0304 21 1 15.7153 4.5357 -3.4971 22 1 13.6649 4.2742 -4.7657 23 6 7.7306 0.5928 -1.1654 24 6 6.2028 0.6839 -1.1695 25 6 3.5779 -1.2020 0.0100 26 6 4.3289 -2.5085 0.0151 27 6 2.1967 -1.1983 0.0042 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6552 2.1329 -0.0048 32 1 4.1160 2.1385 0.0062 33 1 5.8896 1.6541 1.2950 34 1 5.7934 0.0763 2.1140 35 1 8.0215 -0.5304 1.2361 36 1 8.1100 0.9927 2.1534 37 1 10.0793 1.3882 1.0858 38 1 10.0854 0.2319 -0.2674 39 1 10.2933 3.8550 0.6259 40 1 10.0857 4.4387 -1.0428 41 1 8.7217 3.6762 -0.1906 42 1 12.1787 2.4722 0.0509 43 1 12.0726 1.2328 -1.2222 44 1 15.4204 2.6956 -1.6829 45 1 8.0327 -0.4535 -1.2106 46 1 8.1289 1.1240 -2.0298 47 1 5.8126 0.2078 -2.0690 48 1 5.9008 1.7310 -1.1517 49 1 4.5057 -2.8220 1.0440 50 1 3.7404 -3.2678 -0.5000 51 1 5.2837 -2.3808 -0.4950 52 1 1.6549 -2.1326 0.0037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308874296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:22 Heat of formation + Delta-G solvation = 16.790676 kcal Electronic energy + Delta-G solvation = -26598.689841 eV Core-core repulsion = 23176.049976 eV Total energy + Delta-G solvation = -3422.639865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52127 -38.68412 -36.36570 -34.28715 -33.11408 -32.10266 -31.29633 -30.90611 -28.05265 -27.35005 -26.68686 -25.48373 -24.13749 -23.58492 -22.67021 -22.01731 -20.51204 -19.58140 -18.82842 -17.29663 -16.31720 -16.01245 -15.36078 -15.18875 -14.97696 -14.74512 -14.52998 -14.31356 -14.08562 -13.99181 -13.69611 -13.34598 -13.29886 -13.11452 -12.71697 -12.54350 -12.29205 -12.21452 -12.13810 -11.82889 -11.57445 -11.42744 -11.32278 -11.25559 -11.24040 -10.96502 -10.83620 -10.70740 -10.66611 -10.27160 -10.22785 -9.58234 -9.08543 -8.95851 -8.94753 -8.59615 -8.53614 -8.30112 -7.99138 -5.95128 -3.96027 1.07075 1.19457 3.35877 3.40129 3.42709 3.46545 3.68935 4.13779 4.50488 4.57534 4.63897 4.73609 4.85935 5.06638 5.09312 5.10479 5.23417 5.27700 5.31003 5.32562 5.35062 5.40592 5.47047 5.55253 5.55800 5.61468 5.67180 5.72093 5.75872 5.78774 5.90071 5.93342 6.02309 6.08829 6.14669 6.20452 6.23523 6.36945 6.40874 6.43335 6.57014 6.69378 6.73877 6.81104 7.04350 7.17377 7.22484 7.30608 7.39634 7.47043 7.72269 7.88921 8.05312 8.49714 9.10168 9.67046 11.16338 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.002275 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.462652 B =12302.069047 C =12632.893495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.139 4.139 5 C 0.085 3.915 6 N -0.502 5.502 7 C 0.066 3.934 8 C 0.057 3.943 9 N -0.536 5.536 10 C 0.062 3.938 11 C -0.077 4.077 12 H 0.054 0.946 13 C -0.121 4.121 14 C 0.027 3.973 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C 0.057 3.943 24 C 0.064 3.936 25 C -0.058 4.058 26 C -0.105 4.105 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.260 0.740 45 H 0.039 0.961 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.616 -8.044 5.258 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.224 5.224 7 C -0.061 4.061 8 C -0.072 4.072 9 N -0.261 5.261 10 C -0.065 4.065 11 C -0.096 4.096 12 H 0.072 0.928 13 C -0.178 4.178 14 C -0.010 4.010 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.071 4.071 24 C -0.063 4.063 25 C -0.059 4.059 26 C -0.162 4.162 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.098 0.902 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -26.384 -8.080 5.287 28.095 hybrid contribution 0.530 0.748 -0.679 1.141 sum -25.854 -7.332 4.609 27.266 Atomic orbital electron populations 1.20777 0.91322 1.02634 1.02238 1.19903 0.95955 0.93136 0.99977 1.20869 0.93826 0.97454 1.01605 1.21686 0.94874 0.98382 1.00931 1.18653 0.88807 0.92147 1.01246 1.59776 1.03968 1.55284 1.03340 1.22194 0.94951 0.97719 0.91198 1.22146 0.93371 0.97351 0.94295 1.62193 1.09253 1.53276 1.01338 1.22306 0.84587 0.98705 1.00952 1.21169 0.98724 0.93196 0.96554 0.92782 1.21562 0.98943 0.97236 1.00093 1.19131 0.88038 0.96825 0.97046 1.21194 0.91559 1.20427 1.21780 0.92685 1.25024 0.97156 0.96101 0.96327 1.69955 1.02104 1.39808 1.41829 0.86695 0.77544 0.81951 0.82016 1.20304 1.21405 1.20333 1.22170 0.93057 0.97928 0.93934 1.22238 0.95040 0.97045 0.91957 1.19822 0.92942 0.94868 0.98284 1.20646 1.00654 0.92724 1.02174 1.20857 0.93247 0.97505 1.02212 0.91268 0.91639 0.91653 0.86328 0.86143 0.93647 0.90670 0.94300 0.90297 0.91474 0.95021 0.94264 0.93140 0.93871 0.96655 0.96986 0.93082 0.94248 0.89568 0.90546 0.93572 0.91546 0.92412 0.90217 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.09 -0.79 5.88 -104.59 -0.62 -1.41 16 3 C -0.12 -1.12 9.69 -39.61 -0.38 -1.50 16 4 C -0.14 -1.48 8.64 -39.38 -0.34 -1.82 16 5 C 0.09 0.95 4.70 -83.79 -0.39 0.56 16 6 N -0.50 -5.83 3.63 -170.95 -0.62 -6.45 16 7 C 0.07 0.76 5.36 -3.76 -0.02 0.74 16 8 C 0.06 0.72 5.57 -3.76 -0.02 0.70 16 9 N -0.54 -7.91 3.95 -234.46 -0.93 -8.84 16 10 C 0.06 1.07 4.40 -3.82 -0.02 1.05 16 11 C -0.08 -1.59 2.39 -90.61 -0.22 -1.80 16 12 H 0.05 1.13 6.77 -51.93 -0.35 0.78 16 13 C -0.12 -2.37 8.86 37.16 0.33 -2.04 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.39 8.48 -34.44 -0.29 -14.68 16 16 H 0.05 1.51 7.06 -52.49 -0.37 1.14 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 19 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.06 0.80 5.43 -3.77 -0.02 0.78 16 24 C 0.06 0.78 5.31 -3.76 -0.02 0.76 16 25 C -0.06 -0.60 5.90 -104.42 -0.62 -1.22 16 26 C -0.11 -0.95 9.77 36.01 0.35 -0.60 16 27 C -0.12 -1.09 9.35 -39.61 -0.37 -1.46 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.27 7.06 -52.49 -0.37 0.90 16 33 H 0.05 0.55 7.44 -51.93 -0.39 0.16 16 34 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 37 H 0.07 1.16 7.84 -51.93 -0.41 0.75 16 38 H 0.03 0.57 8.00 -51.93 -0.42 0.15 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.05 7.11 -51.92 -0.37 0.68 16 41 H 0.04 0.76 7.57 -51.93 -0.39 0.37 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.27 6.73 -51.93 -0.35 0.92 16 47 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 48 H 0.05 0.59 7.24 -51.93 -0.38 0.21 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 51 H 0.08 0.82 7.46 -51.93 -0.39 0.43 16 52 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 401.57 15.07 6.05 6.05 Total: -1.00 -29.95 401.57 -11.92 -41.87 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -9.64 Total: -2.85 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.51 Total: -20.23 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.81 Total: -41.68 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.95 -11.92 -41.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308874296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.662 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds