Wall clock time and date at job start Tue Mar 31 2020 12:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38309 * 119.92537 * 2 1 4 4 C 1.38082 * 120.07242 * 179.72295 * 3 2 1 5 5 C 1.38936 * 119.92642 * 0.02562 * 4 3 2 6 6 N 1.39670 * 120.07337 * 180.02562 * 5 4 3 7 7 C 1.46961 * 110.99967 * 63.79895 * 6 5 4 8 8 C 1.53053 * 109.36364 * 176.80978 * 7 6 5 9 9 N 1.46959 * 109.36332 * 58.40023 * 8 7 6 10 10 C 1.46905 * 110.99951 * 176.80920 * 9 8 7 11 11 C 1.52998 * 109.46956 * 199.58450 * 10 9 8 12 12 H 1.08993 * 109.47826 * 303.83888 * 11 10 9 13 13 C 1.53005 * 109.46760 * 63.84352 * 11 10 9 14 14 C 1.53006 * 109.46747 * 183.83620 * 11 10 9 15 15 C 1.50699 * 109.46769 * 175.00323 * 14 11 10 16 16 H 1.08000 * 120.00206 * 0.02562 * 15 14 11 17 17 C 1.37883 * 119.99808 * 180.02562 * 15 14 11 18 18 N 1.31510 * 119.99904 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99885 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47310 * 59.99692 * 19 17 15 21 21 H 1.48506 * 109.47172 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47407 * 299.99411 * 19 17 15 23 23 C 1.46954 * 110.88503 * 300.67982 * 9 8 7 24 24 C 1.46963 * 111.00103 * 300.00091 * 6 5 4 25 25 C 1.38889 * 119.84891 * 0.02562 * 5 4 3 26 26 C 1.50702 * 120.03419 * 179.97438 * 25 5 4 27 27 C 1.38124 * 119.92467 * 359.97438 * 25 5 4 28 28 H 1.08999 * 109.47349 * 89.99681 * 1 2 3 29 29 H 1.08999 * 109.46889 * 209.99921 * 1 2 3 30 30 H 1.09001 * 109.46739 * 329.99772 * 1 2 3 31 31 H 1.07999 * 119.96249 * 359.70329 * 3 2 1 32 32 H 1.07994 * 120.03704 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.48769 * 296.77997 * 7 6 5 34 34 H 1.08997 * 109.48658 * 56.84472 * 7 6 5 35 35 H 1.09000 * 109.48866 * 298.43870 * 8 7 6 36 36 H 1.08996 * 109.50724 * 178.37976 * 8 7 6 37 37 H 1.08995 * 109.46854 * 319.58980 * 10 9 8 38 38 H 1.09001 * 109.46430 * 79.58812 * 10 9 8 39 39 H 1.08998 * 109.47201 * 65.38920 * 13 11 10 40 40 H 1.09007 * 109.46543 * 185.38456 * 13 11 10 41 41 H 1.09000 * 109.46981 * 305.37720 * 13 11 10 42 42 H 1.08995 * 109.47123 * 295.00480 * 14 11 10 43 43 H 1.08998 * 109.47161 * 55.00660 * 14 11 10 44 44 H 0.97004 * 119.99984 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.48771 * 299.35436 * 23 9 8 46 46 H 1.08998 * 109.51140 * 179.29680 * 23 9 8 47 47 H 1.08998 * 109.48762 * 303.15513 * 24 6 5 48 48 H 1.08993 * 109.48643 * 63.22043 * 24 6 5 49 49 H 1.08999 * 109.47129 * 89.99629 * 26 25 5 50 50 H 1.08999 * 109.46928 * 209.99317 * 26 25 5 51 51 H 1.09003 * 109.47084 * 329.99620 * 26 25 5 52 52 H 1.08003 * 119.95963 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2022 0.0058 5 6 4.2740 -0.0001 0.0111 6 7 5.6707 -0.0001 0.0174 7 6 6.1917 0.6078 1.2498 8 6 7.7195 0.5168 1.2540 9 7 8.2516 1.2007 0.0670 10 6 9.7206 1.2007 0.0737 11 6 10.2349 2.2973 -0.8611 12 1 9.8211 2.1482 -1.8583 13 6 9.8028 3.6651 -0.3288 14 6 11.7622 2.2354 -0.9281 15 6 12.2613 3.2332 -1.9412 16 1 11.5595 3.8501 -2.4827 17 6 13.6141 3.3585 -2.1767 18 7 14.4687 2.6077 -1.5169 19 14 14.2328 4.5959 -3.4319 20 1 13.8105 5.9617 -3.0304 21 1 15.7153 4.5357 -3.4971 22 1 13.6649 4.2742 -4.7657 23 6 7.7306 0.5928 -1.1654 24 6 6.2028 0.6839 -1.1695 25 6 3.5779 -1.2020 0.0100 26 6 4.3289 -2.5085 0.0151 27 6 2.1967 -1.1983 0.0042 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6552 2.1329 -0.0048 32 1 4.1160 2.1385 0.0062 33 1 5.8896 1.6541 1.2950 34 1 5.7934 0.0763 2.1140 35 1 8.0215 -0.5304 1.2361 36 1 8.1100 0.9927 2.1534 37 1 10.0793 1.3882 1.0858 38 1 10.0854 0.2319 -0.2674 39 1 10.2933 3.8550 0.6259 40 1 10.0857 4.4387 -1.0428 41 1 8.7217 3.6762 -0.1906 42 1 12.1787 2.4722 0.0509 43 1 12.0726 1.2328 -1.2222 44 1 15.4204 2.6956 -1.6829 45 1 8.0327 -0.4535 -1.2106 46 1 8.1289 1.1240 -2.0298 47 1 5.8126 0.2078 -2.0690 48 1 5.9008 1.7310 -1.1517 49 1 4.5057 -2.8220 1.0440 50 1 3.7404 -3.2678 -0.5000 51 1 5.2837 -2.3808 -0.4950 52 1 1.6549 -2.1326 0.0037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308874296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:21 Heat of formation + Delta-G solvation = 2.443016 kcal Electronic energy + Delta-G solvation = -26599.312002 eV Core-core repulsion = 23176.049976 eV Total energy + Delta-G solvation = -3423.262026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37149 -39.69711 -37.64444 -35.76434 -34.21813 -33.66057 -32.17807 -31.94794 -29.37463 -28.42800 -28.01332 -26.64663 -25.46876 -24.63137 -24.05275 -23.11420 -21.26336 -20.63529 -20.46506 -18.54151 -18.09262 -16.79080 -16.66408 -16.28432 -16.17049 -16.00225 -15.69627 -15.61461 -15.25240 -14.79954 -14.68400 -14.48750 -14.13146 -14.08190 -13.92578 -13.87969 -13.39554 -13.30708 -13.23938 -13.00131 -12.78890 -12.75473 -12.62492 -12.39397 -12.33389 -12.28681 -12.20707 -12.06815 -11.99761 -11.89823 -11.69871 -11.35355 -11.05613 -10.86307 -10.51943 -9.67753 -9.51878 -9.27078 -9.22217 -8.16539 -6.25462 0.33598 0.46901 1.39964 1.42737 1.50353 2.42217 2.74320 2.79040 2.94063 3.16563 3.84225 3.95204 3.96192 4.01011 4.03741 4.14340 4.27531 4.30991 4.36677 4.42964 4.44244 4.52544 4.52850 4.56159 4.67151 4.78641 4.79965 4.81714 4.85856 4.86358 4.88973 4.90491 4.92424 4.94734 5.05026 5.08818 5.11900 5.17730 5.29511 5.41630 5.47972 5.49699 5.50771 5.56527 5.67329 5.70790 5.80240 5.86877 5.90074 5.96306 6.08601 6.19983 6.32839 6.48828 6.90144 7.42407 8.95171 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.002275 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.462652 B =12302.069047 C =12632.893495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.149 4.149 5 C 0.066 3.934 6 N -0.502 5.502 7 C 0.073 3.927 8 C 0.059 3.941 9 N -0.537 5.537 10 C 0.074 3.926 11 C -0.068 4.068 12 H 0.050 0.950 13 C -0.110 4.110 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.059 0.941 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.060 3.940 24 C 0.074 3.926 25 C -0.069 4.069 26 C -0.101 4.101 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.022 0.978 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.065 0.935 42 H -0.009 1.009 43 H -0.015 1.015 44 H 0.262 0.738 45 H 0.035 0.965 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.041 0.959 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.049 -7.835 5.072 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.169 4.169 5 C -0.028 4.028 6 N -0.223 5.223 7 C -0.053 4.053 8 C -0.070 4.070 9 N -0.261 5.261 10 C -0.053 4.053 11 C -0.087 4.087 12 H 0.069 0.931 13 C -0.167 4.167 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.069 4.069 24 C -0.053 4.053 25 C -0.070 4.070 26 C -0.157 4.157 27 C -0.142 4.142 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.009 0.991 43 H 0.003 0.997 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.083 0.917 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -28.844 -7.872 5.104 30.332 hybrid contribution 1.219 0.636 -0.596 1.499 sum -27.625 -7.236 4.507 28.911 Atomic orbital electron populations 1.20827 0.89332 1.03640 1.03037 1.20255 0.97476 0.92745 0.98607 1.21109 0.93491 0.98562 1.01361 1.21721 0.95568 0.98016 1.01553 1.18737 0.88352 0.92820 1.02873 1.59752 1.04683 1.54949 1.02952 1.22127 0.93808 0.97686 0.91730 1.22197 0.94257 0.97016 0.93480 1.62131 1.07306 1.54113 1.02581 1.22010 0.86481 0.96901 0.99942 1.20962 0.95087 0.95189 0.97429 0.93150 1.21442 1.00198 0.95826 0.99231 1.19015 0.91639 0.94715 0.95066 1.21590 0.92036 1.20780 1.22163 0.92261 1.25955 0.97491 0.98146 0.98467 1.70093 1.02429 1.41520 1.43490 0.85571 0.76941 0.79491 0.79474 1.19275 1.21017 1.19296 1.22145 0.94295 0.97308 0.93111 1.22101 0.93556 0.96950 0.92723 1.20033 0.93681 0.94912 0.98363 1.20611 1.00026 0.92737 1.02366 1.21132 0.92898 0.98592 1.01584 0.90449 0.90502 0.90860 0.84875 0.86647 0.94058 0.89524 0.94513 0.89506 0.91342 0.95977 0.94680 0.94590 0.91657 0.99107 0.99712 0.92973 0.94716 0.90643 0.89985 0.94031 0.91217 0.90891 0.91739 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.39 5.88 -19.84 -0.12 -1.51 16 3 C -0.13 -2.18 9.69 22.25 0.22 -1.96 16 4 C -0.15 -3.01 8.64 22.40 0.19 -2.82 16 5 C 0.07 1.40 4.70 38.22 0.18 1.58 16 6 N -0.50 -11.27 3.63 -694.77 -2.52 -13.79 16 7 C 0.07 1.60 5.36 86.31 0.46 2.07 16 8 C 0.06 1.43 5.57 86.31 0.48 1.91 16 9 N -0.54 -15.62 3.95 -895.71 -3.54 -19.16 16 10 C 0.07 2.61 4.40 86.30 0.38 2.99 16 11 C -0.07 -2.82 2.39 -10.79 -0.03 -2.84 16 12 H 0.05 2.13 6.77 -2.39 -0.02 2.12 16 13 C -0.11 -4.26 8.86 71.98 0.64 -3.62 16 14 C 0.03 1.77 4.45 29.85 0.13 1.90 16 15 C -0.53 -30.19 8.48 25.60 0.22 -29.97 16 16 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 17 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 18 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 19 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 C 0.06 1.65 5.43 86.31 0.47 2.12 16 24 C 0.07 1.75 5.31 86.31 0.46 2.21 16 25 C -0.07 -1.32 5.90 -19.73 -0.12 -1.43 16 26 C -0.10 -1.69 9.77 71.24 0.70 -0.99 16 27 C -0.12 -1.98 9.35 22.25 0.21 -1.77 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.07 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.12 2.38 7.06 -2.91 -0.02 2.36 16 33 H 0.04 0.95 7.44 -2.39 -0.02 0.93 16 34 H 0.09 1.72 8.13 -2.39 -0.02 1.70 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 2.00 8.00 -2.39 -0.02 1.98 16 37 H 0.07 2.37 7.84 -2.39 -0.02 2.36 16 38 H 0.02 0.81 8.00 -2.39 -0.02 0.79 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.03 1.47 7.11 -2.38 -0.02 1.46 16 41 H 0.06 2.23 7.57 -2.39 -0.02 2.22 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 2.23 6.73 -2.39 -0.02 2.22 16 47 H 0.08 1.86 8.13 -2.39 -0.02 1.84 16 48 H 0.04 1.03 7.24 -2.39 -0.02 1.01 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 51 H 0.06 1.28 7.46 -2.39 -0.02 1.26 16 52 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -64.53 401.57 2.75 -61.78 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.85 Total: 13.76 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 5.65 Total: -32.23 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -5.78 Total: -90.32 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.53 2.75 -61.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308874296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.226 kcal (2) G-P(sol) polarization free energy of solvation -64.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds