Wall clock time and date at job start Tue Mar 31 2020 12:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.92483 * 2 1 4 4 C 1.38079 * 120.07378 * 180.02562 * 3 2 1 5 5 C 1.38930 * 119.92864 * 0.02562 * 4 3 2 6 6 N 1.39673 * 120.07738 * 179.97438 * 5 4 3 7 7 C 1.46959 * 110.99908 * 300.00073 * 6 5 4 8 8 C 1.53057 * 109.36103 * 183.18565 * 7 6 5 9 9 N 1.46949 * 109.36574 * 301.59858 * 8 7 6 10 10 C 1.46898 * 111.00039 * 183.18799 * 9 8 7 11 11 C 1.53001 * 109.47205 * 170.00117 * 10 9 8 12 12 H 1.09002 * 109.47118 * 55.00481 * 11 10 9 13 13 C 1.53001 * 109.47328 * 294.99944 * 11 10 9 14 14 C 1.52999 * 109.47200 * 175.00159 * 11 10 9 15 15 C 1.50702 * 109.47522 * 185.00185 * 14 11 10 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 11 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 C 1.46959 * 110.88135 * 59.32343 * 9 8 7 24 24 C 1.46958 * 110.99968 * 63.79922 * 6 5 4 25 25 C 1.38892 * 119.84881 * 0.25362 * 5 4 3 26 26 C 1.50702 * 120.03926 * 179.72644 * 25 5 4 27 27 C 1.38129 * 119.92301 * 359.46820 * 25 5 4 28 28 H 1.08998 * 109.47311 * 89.99925 * 1 2 3 29 29 H 1.09003 * 109.46774 * 209.99658 * 1 2 3 30 30 H 1.09000 * 109.47272 * 329.99363 * 1 2 3 31 31 H 1.08006 * 119.96034 * 0.02595 * 3 2 1 32 32 H 1.08004 * 120.03411 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.48993 * 63.22472 * 7 6 5 34 34 H 1.08995 * 109.50513 * 303.16569 * 7 6 5 35 35 H 1.09001 * 109.48588 * 181.63116 * 8 7 6 36 36 H 1.09004 * 109.48540 * 61.56887 * 8 7 6 37 37 H 1.08995 * 109.47120 * 50.00244 * 10 9 8 38 38 H 1.08999 * 109.47423 * 290.00387 * 10 9 8 39 39 H 1.09008 * 109.46596 * 59.99947 * 13 11 10 40 40 H 1.08998 * 109.47607 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47129 * 300.00358 * 13 11 10 42 42 H 1.09000 * 109.47527 * 64.99784 * 14 11 10 43 43 H 1.09001 * 109.47054 * 304.99874 * 14 11 10 44 44 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 45 45 H 1.08998 * 109.49040 * 60.64582 * 23 9 8 46 46 H 1.08998 * 109.49297 * 180.71121 * 23 9 8 47 47 H 1.08995 * 109.48888 * 296.78284 * 24 6 5 48 48 H 1.09007 * 109.48568 * 56.82504 * 24 6 5 49 49 H 1.09000 * 109.47121 * 89.99754 * 26 25 5 50 50 H 1.08995 * 109.47091 * 209.99778 * 26 25 5 51 51 H 1.09001 * 109.47011 * 330.00055 * 26 25 5 52 52 H 1.08001 * 119.96114 * 180.27470 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0005 5 6 4.2741 0.0001 -0.0016 6 7 5.6708 0.0001 -0.0027 7 6 6.1965 0.6866 -1.1910 8 6 7.7244 0.5956 -1.1951 9 7 8.2519 1.2008 0.0357 10 6 9.7209 1.2008 0.0346 11 6 10.2317 2.0523 1.1987 12 1 9.7979 1.6908 2.1310 13 6 9.8268 3.5114 0.9795 14 6 11.7566 1.9519 1.2732 15 6 12.2497 2.6897 2.4912 16 1 11.5459 3.1814 3.1464 17 6 13.5994 2.7379 2.7686 18 7 14.0302 3.3864 3.8285 19 14 14.8169 1.8880 1.6350 20 1 15.0308 0.4925 2.0954 21 1 14.2790 1.8756 0.2509 22 1 16.1086 2.6202 1.6575 23 6 7.7262 0.5143 1.2240 24 6 6.1984 0.6053 1.2282 25 6 3.5781 -1.2019 -0.0075 26 6 4.3290 -2.5085 -0.0149 27 6 2.1968 -1.1983 -0.0011 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6551 2.1330 0.0004 32 1 4.1159 2.1387 -0.0010 33 1 5.8947 1.7338 -1.1693 34 1 5.8015 0.2128 -2.0896 35 1 8.1180 1.1291 -2.0603 36 1 8.0262 -0.4506 -1.2443 37 1 10.0835 1.6160 -0.9057 38 1 10.0843 0.1792 0.1448 39 1 8.7404 3.5828 0.9264 40 1 10.1904 4.1179 1.8090 41 1 10.2607 3.8727 0.0472 42 1 12.1941 2.3946 0.3784 43 1 12.0489 0.9040 1.3402 44 1 14.9800 3.4236 4.0215 45 1 8.0281 -0.5328 1.2023 46 1 8.1212 0.9884 2.1225 47 1 5.8965 1.6514 1.2774 48 1 5.8044 0.0720 2.0934 49 1 4.5108 -2.8289 1.0110 50 1 3.7381 -3.2642 -0.5323 51 1 5.2814 -2.3772 -0.5287 52 1 1.6550 -2.1326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308874297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:25 Heat of formation + Delta-G solvation = 20.883012 kcal Electronic energy + Delta-G solvation = -26672.740704 eV Core-core repulsion = 23250.278296 eV Total energy + Delta-G solvation = -3422.462408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.54765 -38.75159 -36.47834 -34.34950 -33.12424 -32.11990 -31.36980 -30.93142 -28.27270 -27.39994 -27.12520 -25.52647 -24.13243 -23.62049 -22.60573 -21.80836 -20.52861 -19.62977 -18.86811 -17.33310 -16.72824 -16.03166 -15.45894 -15.21554 -15.02422 -14.81381 -14.51271 -14.19227 -14.13201 -14.06263 -13.68709 -13.36610 -13.31420 -13.19157 -12.87274 -12.70985 -12.33115 -12.25401 -12.13296 -11.90680 -11.74148 -11.60035 -11.45348 -11.33498 -11.26843 -11.05762 -10.93661 -10.74212 -10.64394 -10.32369 -9.87923 -9.57533 -9.38363 -9.03379 -8.96855 -8.62347 -8.55236 -8.49674 -8.07184 -6.00192 -3.96889 1.05741 1.18229 3.32436 3.40035 3.43789 3.45269 3.66390 4.07123 4.48415 4.56387 4.62852 4.72148 4.82364 5.04619 5.05592 5.09170 5.18710 5.26451 5.27105 5.30136 5.32617 5.34042 5.44966 5.52495 5.53427 5.59813 5.63283 5.66803 5.71856 5.74584 5.81427 5.86449 5.98171 6.06290 6.07399 6.08353 6.21566 6.30365 6.35724 6.41419 6.43621 6.61407 6.67739 6.77775 6.86548 7.04494 7.15513 7.23423 7.27836 7.32798 7.39102 7.52624 7.85031 8.59512 9.05648 9.62839 11.13228 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002345 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.820846 B =11936.356071 C =12182.816617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.119 4.119 4 C -0.139 4.139 5 C 0.085 3.915 6 N -0.502 5.502 7 C 0.064 3.936 8 C 0.057 3.943 9 N -0.535 5.535 10 C 0.059 3.941 11 C -0.072 4.072 12 H 0.061 0.939 13 C -0.123 4.123 14 C -0.010 4.010 15 C -0.511 4.511 16 H 0.073 0.927 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.266 1.266 22 H -0.289 1.289 23 C 0.055 3.945 24 C 0.065 3.935 25 C -0.058 4.058 26 C -0.105 4.105 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.038 0.962 42 H 0.015 0.985 43 H 0.007 0.993 44 H 0.262 0.738 45 H 0.040 0.960 46 H 0.090 0.910 47 H 0.046 0.954 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.873 -9.246 -10.723 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.159 4.159 5 C -0.009 4.009 6 N -0.224 5.224 7 C -0.062 4.062 8 C -0.072 4.072 9 N -0.260 5.260 10 C -0.068 4.068 11 C -0.091 4.091 12 H 0.080 0.920 13 C -0.180 4.180 14 C -0.047 4.047 15 C -0.549 4.549 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.191 1.191 22 H -0.215 1.215 23 C -0.073 4.073 24 C -0.061 4.061 25 C -0.059 4.059 26 C -0.162 4.162 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.076 0.924 51 H 0.097 0.903 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.671 -9.194 -10.633 29.268 hybrid contribution 0.844 -0.335 -0.493 1.033 sum -24.827 -9.529 -11.126 28.827 Atomic orbital electron populations 1.20779 0.91307 1.02692 1.02205 1.19907 0.95967 0.93132 0.99932 1.20872 0.93823 0.97465 1.01583 1.21680 0.94882 0.98363 1.00937 1.18644 0.88775 0.92157 1.01319 1.59777 1.04007 1.55235 1.03350 1.22206 0.94830 0.97071 0.92143 1.22131 0.93530 0.97947 0.93556 1.62176 1.08921 1.53454 1.01432 1.22326 0.85084 0.98696 1.00687 1.21030 0.97425 0.95042 0.95592 0.92023 1.21579 0.99157 0.96233 1.01069 1.19623 0.91245 0.96218 0.97661 1.21122 0.92800 1.32819 1.08140 0.90855 1.25035 0.98463 0.95150 0.95024 1.69915 1.14709 1.42942 1.26906 0.86806 0.80731 0.79748 0.82137 1.20459 1.19078 1.21506 1.22207 0.93084 0.97272 0.94756 1.22223 0.94977 0.97825 0.91085 1.19823 0.92949 0.94861 0.98279 1.20644 1.00541 0.92727 1.02278 1.20859 0.93243 0.97516 1.02195 0.91288 0.91618 0.91626 0.86309 0.86144 0.93602 0.90633 0.90356 0.94293 0.91304 0.95274 0.93832 0.92290 0.94297 0.96662 0.97425 0.92863 0.94196 0.89190 0.93545 0.90472 0.91453 0.92434 0.90303 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.09 -0.78 5.88 -104.58 -0.62 -1.39 16 3 C -0.12 -1.11 9.69 -39.61 -0.38 -1.49 16 4 C -0.14 -1.45 8.64 -39.38 -0.34 -1.79 16 5 C 0.08 0.93 4.70 -83.79 -0.39 0.54 16 6 N -0.50 -5.71 3.63 -170.95 -0.62 -6.33 16 7 C 0.06 0.71 5.31 -3.76 -0.02 0.69 16 8 C 0.06 0.69 5.61 -3.77 -0.02 0.67 16 9 N -0.54 -7.60 4.16 -234.47 -0.98 -8.57 16 10 C 0.06 0.97 4.35 -3.82 -0.02 0.95 16 11 C -0.07 -1.41 2.26 -90.62 -0.21 -1.62 16 12 H 0.06 1.24 6.28 -51.93 -0.33 0.92 16 13 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 14 C -0.01 -0.23 3.51 -27.88 -0.10 -0.33 16 15 C -0.51 -14.44 8.96 -34.44 -0.31 -14.74 16 16 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 17 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.91 -28.05 13.96 55.43 0.77 -27.27 16 19 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.06 0.75 5.42 -3.77 -0.02 0.73 16 24 C 0.07 0.79 5.36 -3.77 -0.02 0.77 16 25 C -0.06 -0.59 5.90 -104.42 -0.62 -1.21 16 26 C -0.11 -0.94 9.77 36.01 0.35 -0.59 16 27 C -0.12 -1.08 9.35 -39.61 -0.37 -1.45 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.12 1.25 7.06 -52.48 -0.37 0.88 16 33 H 0.05 0.53 7.24 -51.93 -0.38 0.16 16 34 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 1.10 8.03 -51.93 -0.42 0.69 16 38 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.04 0.75 7.75 -51.92 -0.40 0.35 16 40 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.32 6.25 -51.93 -0.32 0.99 16 47 H 0.05 0.58 7.44 -51.93 -0.39 0.20 16 48 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 51 H 0.08 0.78 7.46 -51.93 -0.39 0.40 16 52 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -30.34 397.41 -11.56 -41.90 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -9.57 Total: -2.11 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.48 Total: -20.85 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.82 Total: -42.18 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.34 -11.56 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308874297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.785 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds