Wall clock time and date at job start Tue Mar 31 2020 12:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38309 * 119.92483 * 2 1 4 4 C 1.38079 * 120.07378 * 180.02562 * 3 2 1 5 5 C 1.38930 * 119.92864 * 0.02562 * 4 3 2 6 6 N 1.39673 * 120.07738 * 179.97438 * 5 4 3 7 7 C 1.46959 * 110.99908 * 300.00073 * 6 5 4 8 8 C 1.53057 * 109.36103 * 183.18565 * 7 6 5 9 9 N 1.46949 * 109.36574 * 301.59858 * 8 7 6 10 10 C 1.46898 * 111.00039 * 183.18799 * 9 8 7 11 11 C 1.53001 * 109.47205 * 170.00117 * 10 9 8 12 12 H 1.09002 * 109.47118 * 55.00481 * 11 10 9 13 13 C 1.53001 * 109.47328 * 294.99944 * 11 10 9 14 14 C 1.52999 * 109.47200 * 175.00159 * 11 10 9 15 15 C 1.50702 * 109.47522 * 185.00185 * 14 11 10 16 16 H 1.08002 * 119.99446 * 359.97438 * 15 14 11 17 17 C 1.37871 * 120.00072 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 179.72119 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 C 1.46959 * 110.88135 * 59.32343 * 9 8 7 24 24 C 1.46958 * 110.99968 * 63.79922 * 6 5 4 25 25 C 1.38892 * 119.84881 * 0.25362 * 5 4 3 26 26 C 1.50702 * 120.03926 * 179.72644 * 25 5 4 27 27 C 1.38129 * 119.92301 * 359.46820 * 25 5 4 28 28 H 1.08998 * 109.47311 * 89.99925 * 1 2 3 29 29 H 1.09003 * 109.46774 * 209.99658 * 1 2 3 30 30 H 1.09000 * 109.47272 * 329.99363 * 1 2 3 31 31 H 1.08006 * 119.96034 * 0.02595 * 3 2 1 32 32 H 1.08004 * 120.03411 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.48993 * 63.22472 * 7 6 5 34 34 H 1.08995 * 109.50513 * 303.16569 * 7 6 5 35 35 H 1.09001 * 109.48588 * 181.63116 * 8 7 6 36 36 H 1.09004 * 109.48540 * 61.56887 * 8 7 6 37 37 H 1.08995 * 109.47120 * 50.00244 * 10 9 8 38 38 H 1.08999 * 109.47423 * 290.00387 * 10 9 8 39 39 H 1.09008 * 109.46596 * 59.99947 * 13 11 10 40 40 H 1.08998 * 109.47607 * 179.97438 * 13 11 10 41 41 H 1.08994 * 109.47129 * 300.00358 * 13 11 10 42 42 H 1.09000 * 109.47527 * 64.99784 * 14 11 10 43 43 H 1.09001 * 109.47054 * 304.99874 * 14 11 10 44 44 H 0.96999 * 120.00128 * 180.27192 * 18 17 15 45 45 H 1.08998 * 109.49040 * 60.64582 * 23 9 8 46 46 H 1.08998 * 109.49297 * 180.71121 * 23 9 8 47 47 H 1.08995 * 109.48888 * 296.78284 * 24 6 5 48 48 H 1.09007 * 109.48568 * 56.82504 * 24 6 5 49 49 H 1.09000 * 109.47121 * 89.99754 * 26 25 5 50 50 H 1.08995 * 109.47091 * 209.99778 * 26 25 5 51 51 H 1.09001 * 109.47011 * 330.00055 * 26 25 5 52 52 H 1.08001 * 119.96114 * 180.27470 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5778 1.2023 -0.0005 5 6 4.2741 0.0001 -0.0016 6 7 5.6708 0.0001 -0.0027 7 6 6.1965 0.6866 -1.1910 8 6 7.7244 0.5956 -1.1951 9 7 8.2519 1.2008 0.0357 10 6 9.7209 1.2008 0.0346 11 6 10.2317 2.0523 1.1987 12 1 9.7979 1.6908 2.1310 13 6 9.8268 3.5114 0.9795 14 6 11.7566 1.9519 1.2732 15 6 12.2497 2.6897 2.4912 16 1 11.5459 3.1814 3.1464 17 6 13.5994 2.7379 2.7686 18 7 14.0302 3.3864 3.8285 19 14 14.8169 1.8880 1.6350 20 1 15.0308 0.4925 2.0954 21 1 14.2790 1.8756 0.2509 22 1 16.1086 2.6202 1.6575 23 6 7.7262 0.5143 1.2240 24 6 6.1984 0.6053 1.2282 25 6 3.5781 -1.2019 -0.0075 26 6 4.3290 -2.5085 -0.0149 27 6 2.1968 -1.1983 -0.0011 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6551 2.1330 0.0004 32 1 4.1159 2.1387 -0.0010 33 1 5.8947 1.7338 -1.1693 34 1 5.8015 0.2128 -2.0896 35 1 8.1180 1.1291 -2.0603 36 1 8.0262 -0.4506 -1.2443 37 1 10.0835 1.6160 -0.9057 38 1 10.0843 0.1792 0.1448 39 1 8.7404 3.5828 0.9264 40 1 10.1904 4.1179 1.8090 41 1 10.2607 3.8727 0.0472 42 1 12.1941 2.3946 0.3784 43 1 12.0489 0.9040 1.3402 44 1 14.9800 3.4236 4.0215 45 1 8.0281 -0.5328 1.2023 46 1 8.1212 0.9884 2.1225 47 1 5.8965 1.6514 1.2774 48 1 5.8044 0.0720 2.0934 49 1 4.5108 -2.8289 1.0110 50 1 3.7381 -3.2642 -0.5323 51 1 5.2814 -2.3772 -0.5287 52 1 1.6550 -2.1326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308874297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:24 Heat of formation + Delta-G solvation = 5.274866 kcal Electronic energy + Delta-G solvation = -26673.417524 eV Core-core repulsion = 23250.278296 eV Total energy + Delta-G solvation = -3423.139228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37842 -39.72916 -37.69697 -35.74473 -34.25127 -33.70590 -32.22311 -31.93633 -29.76083 -28.61051 -28.01992 -26.61641 -25.35790 -24.62818 -23.81825 -23.07133 -21.27410 -20.67892 -20.39637 -18.92939 -18.14912 -16.79277 -16.66093 -16.19481 -16.06000 -15.98581 -15.77969 -15.63409 -15.31805 -14.92652 -14.70335 -14.56470 -14.34619 -14.05542 -13.91407 -13.89894 -13.53304 -13.34205 -13.28914 -13.04857 -12.85389 -12.77411 -12.55986 -12.34855 -12.29571 -12.28629 -12.17253 -12.00958 -11.92457 -11.78892 -11.70990 -11.35317 -11.15399 -10.94016 -10.72738 -9.68327 -9.52185 -9.27734 -9.21186 -8.25366 -6.27489 0.33038 0.46230 1.35884 1.37757 1.49586 2.38070 2.73076 2.79645 2.94087 3.09758 3.84455 3.93862 3.95189 4.00411 4.03080 4.13994 4.25142 4.31060 4.35343 4.42754 4.43602 4.48659 4.50577 4.52985 4.66985 4.77985 4.79632 4.80654 4.85303 4.86315 4.87230 4.90371 4.91642 4.92983 5.02112 5.06819 5.09942 5.11215 5.17270 5.39586 5.41098 5.41664 5.49182 5.55008 5.66750 5.70054 5.70281 5.73665 5.85874 5.95917 6.09980 6.20237 6.35986 6.48248 6.80020 7.35792 8.91344 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002345 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.820846 B =11936.356071 C =12182.816617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.149 4.149 5 C 0.066 3.934 6 N -0.500 5.500 7 C 0.070 3.930 8 C 0.060 3.940 9 N -0.540 5.540 10 C 0.072 3.928 11 C -0.067 4.067 12 H 0.049 0.951 13 C -0.113 4.113 14 C -0.006 4.006 15 C -0.516 4.516 16 H 0.034 0.966 17 C -0.001 4.001 18 N -0.954 5.954 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.246 1.246 22 H -0.286 1.286 23 C 0.059 3.941 24 C 0.074 3.926 25 C -0.069 4.069 26 C -0.100 4.100 27 C -0.124 4.124 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.026 0.974 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.013 0.987 44 H 0.264 0.736 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.066 0.934 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.416 -10.875 -13.035 32.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.146 4.146 4 C -0.169 4.169 5 C -0.028 4.028 6 N -0.222 5.222 7 C -0.057 4.057 8 C -0.068 4.068 9 N -0.264 5.264 10 C -0.056 4.056 11 C -0.086 4.086 12 H 0.068 0.932 13 C -0.170 4.170 14 C -0.044 4.044 15 C -0.554 4.554 16 H 0.052 0.948 17 C -0.197 4.197 18 N -0.595 5.595 19 Si 0.772 3.228 20 H -0.194 1.194 21 H -0.169 1.169 22 H -0.212 1.212 23 C -0.070 4.070 24 C -0.053 4.053 25 C -0.070 4.070 26 C -0.157 4.157 27 C -0.142 4.142 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.092 0.908 47 H 0.057 0.943 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.085 0.915 52 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -27.244 -10.831 -12.959 32.055 hybrid contribution 1.192 0.215 0.297 1.247 sum -26.052 -10.616 -12.662 30.850 Atomic orbital electron populations 1.20828 0.89341 1.03591 1.03083 1.20257 0.97475 0.92751 0.98615 1.21109 0.93512 0.98558 1.01383 1.21718 0.95563 0.98029 1.01586 1.18741 0.88433 0.92785 1.02834 1.59763 1.04604 1.54911 1.02937 1.22167 0.94093 0.96899 0.92551 1.22181 0.94076 0.97898 0.92685 1.62124 1.07577 1.54195 1.02539 1.22070 0.86482 0.97833 0.99215 1.20896 0.94846 0.96019 0.96870 0.93224 1.21458 1.00186 0.95436 0.99917 1.19569 0.93983 0.95537 0.95337 1.21431 0.92392 1.32464 1.09103 0.94818 1.26016 1.00811 0.96082 0.96777 1.70076 1.15299 1.44970 1.29184 0.85686 0.77803 0.78653 0.80658 1.19417 1.16939 1.21229 1.22139 0.94080 0.96730 0.94015 1.22081 0.93798 0.97505 0.91874 1.20042 0.93674 0.94944 0.98349 1.20610 1.00121 0.92714 1.02270 1.21137 0.92929 0.98578 1.01570 0.90300 0.90562 0.90954 0.84917 0.86695 0.94146 0.89480 0.89151 0.94283 0.90303 0.95242 0.92067 0.95525 0.93622 0.96261 0.96877 0.92729 0.94491 0.90775 0.94310 0.90220 0.91540 0.90773 0.91475 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.40 5.88 -19.84 -0.12 -1.51 16 3 C -0.13 -2.19 9.69 22.25 0.22 -1.97 16 4 C -0.15 -3.01 8.64 22.40 0.19 -2.82 16 5 C 0.07 1.38 4.70 38.21 0.18 1.56 16 6 N -0.50 -10.95 3.63 -694.77 -2.52 -13.47 16 7 C 0.07 1.44 5.31 86.31 0.46 1.90 16 8 C 0.06 1.33 5.61 86.31 0.48 1.81 16 9 N -0.54 -14.65 4.16 -895.73 -3.73 -18.38 16 10 C 0.07 2.22 4.35 86.30 0.38 2.60 16 11 C -0.07 -2.63 2.26 -10.79 -0.02 -2.65 16 12 H 0.05 2.05 6.28 -2.39 -0.01 2.03 16 13 C -0.11 -4.31 8.89 71.98 0.64 -3.67 16 14 C -0.01 -0.30 3.51 29.85 0.10 -0.20 16 15 C -0.52 -29.90 8.96 25.60 0.23 -29.67 16 16 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 17 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 18 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 19 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 C 0.06 1.58 5.42 86.31 0.47 2.04 16 24 C 0.07 1.77 5.36 86.31 0.46 2.23 16 25 C -0.07 -1.31 5.90 -19.73 -0.12 -1.42 16 26 C -0.10 -1.64 9.77 71.24 0.70 -0.95 16 27 C -0.12 -1.97 9.35 22.25 0.21 -1.76 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 30 H 0.07 0.60 8.08 -2.39 -0.02 0.58 16 31 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.12 2.37 7.06 -2.91 -0.02 2.35 16 33 H 0.04 0.89 7.24 -2.39 -0.02 0.87 16 34 H 0.09 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.09 1.81 8.07 -2.39 -0.02 1.79 16 36 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 2.32 8.03 -2.39 -0.02 2.30 16 38 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 39 H 0.06 2.10 7.75 -2.38 -0.02 2.08 16 40 H 0.03 1.16 6.95 -2.39 -0.02 1.14 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 43 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 44 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 2.21 6.25 -2.39 -0.01 2.20 16 47 H 0.04 0.98 7.44 -2.39 -0.02 0.96 16 48 H 0.08 1.84 8.13 -2.38 -0.02 1.82 16 49 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 50 H 0.07 0.93 8.09 -2.39 -0.02 0.92 16 51 H 0.07 1.25 7.46 -2.39 -0.02 1.24 16 52 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -66.24 397.41 2.37 -63.87 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.80 Total: 16.08 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 5.63 Total: -34.44 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -5.95 Total: -92.33 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -66.24 2.37 -63.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308874297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.146 kcal (2) G-P(sol) polarization free energy of solvation -66.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds