Wall clock time and date at job start Tue Mar 31 2020 11:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46827 * 169.27117 * 3 2 1 5 5 C 1.52997 * 109.47394 * 59.99915 * 4 3 2 6 6 C 1.53002 * 109.47549 * 299.99783 * 4 3 2 7 7 C 1.50703 * 109.47338 * 179.97438 * 4 3 2 8 8 N 1.30299 * 126.34494 * 353.65170 * 7 4 3 9 9 N 1.28528 * 110.05439 * 180.02562 * 8 7 4 10 10 C 1.31213 * 109.85730 * 359.97438 * 9 8 7 11 11 N 1.38590 * 126.47064 * 179.97438 * 10 9 8 12 12 C 1.46846 * 110.99853 * 35.80474 * 11 10 9 13 13 C 1.53039 * 109.52017 * 174.16150 * 12 11 10 14 14 C 1.53119 * 109.27684 * 59.17996 * 13 12 11 15 15 C 1.53120 * 109.16324 * 302.34003 * 14 13 12 16 16 H 1.08998 * 109.50311 * 297.68341 * 15 14 13 17 17 C 1.50691 * 109.50490 * 177.59682 * 15 14 13 18 18 H 1.07998 * 120.00218 * 240.00119 * 17 15 14 19 19 C 1.37882 * 120.00033 * 60.28238 * 17 15 14 20 20 N 1.31523 * 119.99817 * 359.71615 * 19 17 15 21 21 Si 1.86798 * 120.00198 * 179.72602 * 19 17 15 22 22 H 1.48498 * 109.47445 * 89.99714 * 21 19 17 23 23 H 1.48504 * 109.46751 * 209.99580 * 21 19 17 24 24 H 1.48503 * 109.46856 * 329.99258 * 21 19 17 25 25 C 1.46852 * 110.99732 * 271.59415 * 11 10 9 26 26 N 1.36448 * 107.05948 * 0.22767 * 10 9 8 27 27 C 1.46505 * 127.14080 * 179.77317 * 26 10 9 28 28 H 4.44645 * 5.63373 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47673 * 49.27218 * 3 2 1 30 30 H 1.09004 * 109.47016 * 289.26492 * 3 2 1 31 31 H 1.09001 * 109.47885 * 185.59106 * 5 4 3 32 32 H 1.09004 * 109.47161 * 305.59047 * 5 4 3 33 33 H 1.09005 * 109.47451 * 65.59012 * 5 4 3 34 34 H 1.08997 * 109.46986 * 300.00634 * 6 4 3 35 35 H 1.09001 * 109.46648 * 60.00033 * 6 4 3 36 36 H 1.08995 * 109.47455 * 179.97438 * 6 4 3 37 37 H 1.08990 * 109.46403 * 54.14508 * 12 11 10 38 38 H 1.09000 * 109.45115 * 294.16466 * 12 11 10 39 39 H 1.08991 * 109.50384 * 299.23837 * 13 12 11 40 40 H 1.09001 * 109.49909 * 179.11359 * 13 12 11 41 41 H 1.09005 * 109.52080 * 182.44148 * 14 13 12 42 42 H 1.08996 * 109.57723 * 62.28061 * 14 13 12 43 43 H 0.96995 * 119.99765 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.46341 * 65.82435 * 25 11 10 45 45 H 1.09004 * 109.46304 * 305.85077 * 25 11 10 46 46 H 1.08994 * 109.47260 * 95.31888 * 27 26 10 47 47 H 1.08996 * 109.46906 * 215.32046 * 27 26 10 48 48 H 1.08999 * 109.47083 * 335.31718 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4182 -0.2685 5 6 2.6448 2.3592 0.8245 6 6 2.6451 1.8941 -1.6302 7 6 4.6623 1.4191 -0.2679 8 7 5.4350 0.4164 0.0407 9 7 6.6685 0.7619 -0.0642 10 6 6.7495 2.0137 -0.4491 11 7 7.9127 2.7343 -0.6689 12 6 8.9600 1.8805 -1.2438 13 6 10.1755 2.7364 -1.6071 14 6 10.6953 3.4364 -0.3484 15 6 9.5710 4.2810 0.2576 16 1 9.2730 5.0530 -0.4518 17 6 10.0566 4.9268 1.5296 18 1 9.5586 4.7187 2.4651 19 6 11.1330 5.7879 1.4983 20 7 11.7395 6.0413 0.3591 21 14 11.7301 6.5944 3.0738 22 1 12.7558 5.7319 3.7136 23 1 12.3240 7.9184 2.7578 24 1 10.5853 6.7743 4.0024 25 6 8.3731 3.3802 0.5670 26 7 5.4723 2.4737 -0.5865 27 6 5.0552 3.8179 -0.9935 28 1 -1.0503 -0.0004 0.0003 29 1 3.0097 -0.6697 -0.7788 30 1 3.0095 -0.3383 0.9702 31 1 2.9236 3.3844 0.5809 32 1 1.5594 2.2838 0.8911 33 1 3.0877 2.0797 1.7806 34 1 3.0087 1.2237 -2.4090 35 1 1.5551 1.8935 -1.6302 36 1 3.0075 2.9041 -1.8213 37 1 8.5788 1.3919 -2.1404 38 1 9.2529 1.1248 -0.5149 39 1 9.8865 3.4837 -2.3460 40 1 10.9586 2.1000 -2.0192 41 1 11.5344 4.0811 -0.6103 42 1 11.0214 2.6903 0.3761 43 1 12.4969 6.6467 0.3371 44 1 8.6687 2.6173 1.2871 45 1 7.5655 3.9810 0.9854 46 1 4.8588 3.8284 -2.0655 47 1 4.1489 4.0955 -0.4554 48 1 5.8475 4.5297 -0.7621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338504021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:23 Heat of formation + Delta-G solvation = 126.914973 kcal Electronic energy + Delta-G solvation = -27149.869350 eV Core-core repulsion = 23628.464490 eV Total energy + Delta-G solvation = -3521.404861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86541 -38.53297 -37.68317 -34.86040 -33.88027 -32.74890 -31.69782 -30.07711 -28.75961 -27.82350 -27.65302 -27.38721 -25.07396 -23.76679 -22.83650 -21.63853 -20.68111 -19.90969 -18.66705 -17.91942 -17.17905 -16.25763 -16.20082 -15.70856 -15.42737 -14.83420 -14.66245 -14.45155 -14.13289 -13.64605 -13.50903 -13.33561 -13.00097 -12.91470 -12.80345 -12.62805 -12.47674 -12.14491 -12.05155 -11.83547 -11.50641 -11.47244 -11.25679 -11.00073 -10.85918 -10.78354 -10.50602 -10.28011 -10.21472 -10.18423 -9.98078 -9.94670 -9.65675 -9.33361 -8.92084 -8.84898 -8.38063 -8.04751 -6.06154 -4.12883 1.91750 2.33551 2.66008 2.66750 3.02883 3.26753 3.33821 3.36602 3.92749 4.11715 4.24639 4.40750 4.55111 4.60898 4.66733 4.84019 5.08948 5.24264 5.29949 5.30165 5.39408 5.40576 5.46552 5.56585 5.58695 5.61308 5.73053 5.76064 5.77438 5.86221 5.93574 5.96325 6.01169 6.11222 6.20720 6.29210 6.37374 6.55590 6.63064 6.71912 6.85826 7.02086 7.27816 7.36830 7.41164 7.66292 7.71363 7.93026 8.05360 8.35110 8.89958 8.95944 9.52099 10.99843 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003064 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.298063 B = 9134.906141 C = 9717.001769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.170 4.170 3 C 0.006 3.994 4 C 0.038 3.962 5 C -0.147 4.147 6 C -0.149 4.149 7 C 0.172 3.828 8 N -0.285 5.285 9 N -0.322 5.322 10 C 0.370 3.630 11 N -0.466 5.466 12 C 0.079 3.921 13 C -0.118 4.118 14 C -0.114 4.114 15 C 0.058 3.942 16 H 0.036 0.964 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.077 3.923 26 N -0.467 5.467 27 C 0.074 3.926 28 H 0.215 0.785 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.035 0.965 43 H 0.261 0.739 44 H 0.037 0.963 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.577 -6.153 -4.828 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.170 4.170 3 C -0.031 4.031 4 C 0.035 3.965 5 C -0.205 4.205 6 C -0.207 4.207 7 C -0.096 4.096 8 N -0.125 5.125 9 N -0.166 5.166 10 C 0.014 3.986 11 N -0.192 5.192 12 C -0.048 4.048 13 C -0.156 4.156 14 C -0.152 4.152 15 C 0.039 3.961 16 H 0.054 0.946 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.049 4.049 26 N -0.160 5.160 27 C -0.069 4.069 28 H 0.232 0.768 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.050 -7.019 -4.820 19.957 hybrid contribution 0.020 1.283 0.921 1.580 sum -18.030 -5.736 -3.899 19.318 Atomic orbital electron populations 1.24837 0.95826 1.00852 1.02021 1.22939 0.94209 1.00153 0.99723 1.18597 0.84288 0.95417 1.04825 1.18786 0.83754 0.96527 0.97383 1.22032 1.01901 0.98570 0.98014 1.22056 1.01925 1.01695 0.95029 1.24296 0.95144 0.84819 1.05330 1.73908 0.96564 1.23653 1.18397 1.74661 1.11645 1.10470 1.19860 1.22782 0.85739 0.90405 0.99658 1.58944 1.00987 1.29275 1.30001 1.22014 0.90651 0.93902 0.98202 1.21732 0.94815 0.98494 1.00512 1.21703 1.01892 0.98109 0.93474 1.18695 0.88551 0.92217 0.96594 0.94596 1.21060 1.14595 1.26333 0.93585 0.92755 1.24912 0.96384 0.96256 0.96090 1.69881 1.21948 1.36014 1.24671 0.86599 0.79026 0.78790 0.83619 1.20633 1.21192 1.19964 1.22507 0.99395 0.96770 0.86205 1.45999 1.06004 1.12369 1.51584 1.22203 1.02676 0.80671 1.01322 0.76768 0.88618 0.88277 0.92102 0.90932 0.91713 0.91887 0.91007 0.91966 0.91986 0.93279 0.91969 0.92529 0.88699 0.94580 0.92912 0.94442 0.92382 0.90205 0.89620 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.17 -1.60 10.71 -37.12 -0.40 -2.00 16 3 C 0.01 0.06 4.30 -29.52 -0.13 -0.07 16 4 C 0.04 0.39 0.57 -155.66 -0.09 0.31 16 5 C -0.15 -1.36 8.21 37.16 0.31 -1.05 16 6 C -0.15 -1.29 8.06 37.16 0.30 -0.99 16 7 C 0.17 2.44 6.35 -154.01 -0.98 1.46 16 8 N -0.29 -4.97 11.51 32.99 0.38 -4.59 16 9 N -0.32 -6.27 11.69 30.31 0.35 -5.92 16 10 C 0.37 6.69 6.71 -318.87 -2.14 4.55 16 11 N -0.47 -8.76 4.64 -174.55 -0.81 -9.57 16 12 C 0.08 1.45 5.09 -3.83 -0.02 1.43 16 13 C -0.12 -2.20 6.09 -26.65 -0.16 -2.37 16 14 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 15 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 16 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.52 -13.66 8.56 -34.44 -0.29 -13.96 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 19 C 0.07 1.75 5.31 -17.81 -0.09 1.65 16 20 N -0.89 -24.34 11.36 55.43 0.63 -23.71 16 21 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.08 1.61 4.62 -3.83 -0.02 1.60 16 26 N -0.47 -6.87 3.21 -121.46 -0.39 -7.26 16 27 C 0.07 0.81 9.42 59.85 0.56 1.38 16 28 H 0.22 1.01 7.80 -54.08 -0.42 0.59 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.51 5.78 -51.93 -0.30 0.21 16 32 H 0.07 0.59 7.04 -51.93 -0.37 0.22 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 7.23 -51.93 -0.38 0.17 16 36 H 0.06 0.48 5.55 -51.93 -0.29 0.19 16 37 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.05 0.94 8.06 -51.93 -0.42 0.53 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.09 2.40 6.16 -51.93 -0.32 2.08 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 46 H 0.08 0.73 7.64 -51.93 -0.40 0.34 16 47 H 0.09 0.72 5.31 -51.93 -0.28 0.45 16 48 H 0.10 1.23 8.11 -51.93 -0.42 0.81 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -30.03 378.01 -9.85 -39.89 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.77 Total: 0.52 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.92 Total: -10.77 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.16 Total: -51.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.03 -9.85 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338504021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.802 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds