Wall clock time and date at job start Tue Mar 31 2020 11:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46827 * 169.27117 * 3 2 1 5 5 C 1.52997 * 109.47394 * 59.99915 * 4 3 2 6 6 C 1.53002 * 109.47549 * 299.99783 * 4 3 2 7 7 C 1.50703 * 109.47338 * 179.97438 * 4 3 2 8 8 N 1.30299 * 126.34494 * 353.65170 * 7 4 3 9 9 N 1.28528 * 110.05439 * 180.02562 * 8 7 4 10 10 C 1.31213 * 109.85730 * 359.97438 * 9 8 7 11 11 N 1.38590 * 126.47064 * 179.97438 * 10 9 8 12 12 C 1.46846 * 110.99853 * 35.80474 * 11 10 9 13 13 C 1.53039 * 109.52017 * 174.16150 * 12 11 10 14 14 C 1.53119 * 109.27684 * 59.17996 * 13 12 11 15 15 C 1.53120 * 109.16324 * 302.34003 * 14 13 12 16 16 H 1.08998 * 109.50311 * 297.68341 * 15 14 13 17 17 C 1.50691 * 109.50490 * 177.59682 * 15 14 13 18 18 H 1.07998 * 120.00218 * 240.00119 * 17 15 14 19 19 C 1.37882 * 120.00033 * 60.28238 * 17 15 14 20 20 N 1.31523 * 119.99817 * 359.71615 * 19 17 15 21 21 Si 1.86798 * 120.00198 * 179.72602 * 19 17 15 22 22 H 1.48498 * 109.47445 * 89.99714 * 21 19 17 23 23 H 1.48504 * 109.46751 * 209.99580 * 21 19 17 24 24 H 1.48503 * 109.46856 * 329.99258 * 21 19 17 25 25 C 1.46852 * 110.99732 * 271.59415 * 11 10 9 26 26 N 1.36448 * 107.05948 * 0.22767 * 10 9 8 27 27 C 1.46505 * 127.14080 * 179.77317 * 26 10 9 28 28 H 4.44645 * 5.63373 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47673 * 49.27218 * 3 2 1 30 30 H 1.09004 * 109.47016 * 289.26492 * 3 2 1 31 31 H 1.09001 * 109.47885 * 185.59106 * 5 4 3 32 32 H 1.09004 * 109.47161 * 305.59047 * 5 4 3 33 33 H 1.09005 * 109.47451 * 65.59012 * 5 4 3 34 34 H 1.08997 * 109.46986 * 300.00634 * 6 4 3 35 35 H 1.09001 * 109.46648 * 60.00033 * 6 4 3 36 36 H 1.08995 * 109.47455 * 179.97438 * 6 4 3 37 37 H 1.08990 * 109.46403 * 54.14508 * 12 11 10 38 38 H 1.09000 * 109.45115 * 294.16466 * 12 11 10 39 39 H 1.08991 * 109.50384 * 299.23837 * 13 12 11 40 40 H 1.09001 * 109.49909 * 179.11359 * 13 12 11 41 41 H 1.09005 * 109.52080 * 182.44148 * 14 13 12 42 42 H 1.08996 * 109.57723 * 62.28061 * 14 13 12 43 43 H 0.96995 * 119.99765 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.46341 * 65.82435 * 25 11 10 45 45 H 1.09004 * 109.46304 * 305.85077 * 25 11 10 46 46 H 1.08994 * 109.47260 * 95.31888 * 27 26 10 47 47 H 1.08996 * 109.46906 * 215.32046 * 27 26 10 48 48 H 1.08999 * 109.47083 * 335.31718 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4182 -0.2685 5 6 2.6448 2.3592 0.8245 6 6 2.6451 1.8941 -1.6302 7 6 4.6623 1.4191 -0.2679 8 7 5.4350 0.4164 0.0407 9 7 6.6685 0.7619 -0.0642 10 6 6.7495 2.0137 -0.4491 11 7 7.9127 2.7343 -0.6689 12 6 8.9600 1.8805 -1.2438 13 6 10.1755 2.7364 -1.6071 14 6 10.6953 3.4364 -0.3484 15 6 9.5710 4.2810 0.2576 16 1 9.2730 5.0530 -0.4518 17 6 10.0566 4.9268 1.5296 18 1 9.5586 4.7187 2.4651 19 6 11.1330 5.7879 1.4983 20 7 11.7395 6.0413 0.3591 21 14 11.7301 6.5944 3.0738 22 1 12.7558 5.7319 3.7136 23 1 12.3240 7.9184 2.7578 24 1 10.5853 6.7743 4.0024 25 6 8.3731 3.3802 0.5670 26 7 5.4723 2.4737 -0.5865 27 6 5.0552 3.8179 -0.9935 28 1 -1.0503 -0.0004 0.0003 29 1 3.0097 -0.6697 -0.7788 30 1 3.0095 -0.3383 0.9702 31 1 2.9236 3.3844 0.5809 32 1 1.5594 2.2838 0.8911 33 1 3.0877 2.0797 1.7806 34 1 3.0087 1.2237 -2.4090 35 1 1.5551 1.8935 -1.6302 36 1 3.0075 2.9041 -1.8213 37 1 8.5788 1.3919 -2.1404 38 1 9.2529 1.1248 -0.5149 39 1 9.8865 3.4837 -2.3460 40 1 10.9586 2.1000 -2.0192 41 1 11.5344 4.0811 -0.6103 42 1 11.0214 2.6903 0.3761 43 1 12.4969 6.6467 0.3371 44 1 8.6687 2.6173 1.2871 45 1 7.5655 3.9810 0.9854 46 1 4.8588 3.8284 -2.0655 47 1 4.1489 4.0955 -0.4554 48 1 5.8475 4.5297 -0.7621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338504021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:22 Heat of formation + Delta-G solvation = 112.890244 kcal Electronic energy + Delta-G solvation = -27150.477508 eV Core-core repulsion = 23628.464490 eV Total energy + Delta-G solvation = -3522.013019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.12719 -40.03597 -38.64894 -36.07630 -35.59445 -33.79944 -33.13749 -31.86648 -30.02900 -28.75698 -28.39171 -28.27435 -27.01659 -25.35564 -23.98683 -23.24298 -22.12596 -20.95615 -20.30415 -18.84301 -18.53113 -17.79177 -17.45336 -17.07321 -16.56853 -16.38594 -15.74240 -15.54333 -15.49877 -15.10406 -14.69922 -14.47620 -14.36197 -14.21463 -14.12621 -13.78833 -13.60432 -13.49334 -13.00659 -12.87085 -12.84811 -12.73319 -12.62110 -12.54082 -12.25032 -12.18788 -11.94312 -11.83598 -11.68231 -11.47209 -11.16607 -11.07915 -10.99355 -10.93577 -10.76772 -10.46945 -10.28343 -9.53699 -8.10660 -6.24199 0.67080 1.20557 1.41191 1.43155 1.52000 1.71814 1.95490 2.00851 2.41531 2.74012 3.06345 3.17290 3.46246 3.73945 3.81026 3.82974 3.90909 4.03594 4.09176 4.20361 4.27487 4.30308 4.45336 4.50980 4.54626 4.62845 4.63794 4.71676 4.73734 4.79827 4.83024 4.86362 4.90811 4.95392 5.00681 5.01189 5.08373 5.19620 5.24226 5.25528 5.28794 5.43984 5.58353 5.62538 5.74410 5.96510 6.09925 6.28069 6.35491 6.77618 6.84755 7.43563 7.66123 8.94082 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003064 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.298063 B = 9134.906141 C = 9717.001769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.207 4.207 3 C 0.010 3.990 4 C 0.040 3.960 5 C -0.144 4.144 6 C -0.145 4.145 7 C 0.194 3.806 8 N -0.318 5.318 9 N -0.352 5.352 10 C 0.349 3.651 11 N -0.460 5.460 12 C 0.085 3.915 13 C -0.106 4.106 14 C -0.108 4.108 15 C 0.061 3.939 16 H 0.013 0.987 17 C -0.538 4.538 18 H 0.048 0.952 19 C 0.022 3.978 20 N -0.910 5.910 21 Si 0.951 3.049 22 H -0.278 1.278 23 H -0.281 1.281 24 H -0.270 1.270 25 C 0.096 3.904 26 N -0.463 5.463 27 C 0.066 3.934 28 H 0.247 0.753 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.017 0.983 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.115 0.885 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 -5.707 -5.311 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C -0.027 4.027 4 C 0.037 3.963 5 C -0.201 4.201 6 C -0.202 4.202 7 C -0.075 4.075 8 N -0.158 5.158 9 N -0.196 5.196 10 C -0.008 4.008 11 N -0.185 5.185 12 C -0.042 4.042 13 C -0.143 4.143 14 C -0.146 4.146 15 C 0.042 3.958 16 H 0.031 0.969 17 C -0.576 4.576 18 H 0.066 0.934 19 C -0.178 4.178 20 N -0.548 5.548 21 Si 0.777 3.223 22 H -0.204 1.204 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.031 4.031 26 N -0.154 5.154 27 C -0.075 4.075 28 H 0.263 0.737 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.133 0.867 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.657 -6.570 -5.312 22.318 hybrid contribution 0.692 1.108 1.073 1.690 sum -19.965 -5.462 -4.239 21.128 Atomic orbital electron populations 1.25609 0.96508 0.98813 0.99961 1.22860 0.94228 1.02036 1.01583 1.18420 0.85404 0.95108 1.03752 1.19021 0.80915 0.97222 0.99163 1.22017 1.02799 0.98678 0.96645 1.22041 1.02893 1.02039 0.93258 1.25085 0.96555 0.83714 1.02107 1.73853 0.96279 1.25226 1.20419 1.74556 1.13059 1.11468 1.20504 1.22660 0.86382 0.90468 1.01306 1.58875 1.01481 1.29627 1.28540 1.21968 0.90383 0.93384 0.98497 1.21611 0.95658 0.98636 0.98428 1.21527 1.00700 0.97370 0.94978 1.18569 0.89919 0.92167 0.95159 0.96890 1.21374 1.14972 1.26948 0.94320 0.93418 1.25609 0.96506 0.96788 0.98906 1.69995 1.22203 1.36381 1.26259 0.85669 0.78495 0.77940 0.80219 1.20426 1.20612 1.19500 1.22114 0.98300 0.95795 0.86871 1.46203 1.04834 1.13660 1.50743 1.22534 1.03315 0.78393 1.03276 0.73701 0.89538 0.89727 0.90922 0.89254 0.93245 0.92601 0.89389 0.90724 0.90194 0.94509 0.91813 0.90119 0.91314 0.95846 0.92837 0.96419 0.92321 0.87855 0.86707 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.45 19.25 74.32 1.43 -1.01 16 2 C -0.21 -3.48 10.71 31.12 0.33 -3.15 16 3 C 0.01 0.20 4.30 28.79 0.12 0.33 16 4 C 0.04 0.75 0.57 -52.93 -0.03 0.72 16 5 C -0.14 -2.32 8.21 71.98 0.59 -1.72 16 6 C -0.14 -2.08 8.06 71.98 0.58 -1.50 16 7 C 0.19 5.36 6.35 137.64 0.87 6.23 16 8 N -0.32 -11.20 11.51 -49.53 -0.57 -11.77 16 9 N -0.35 -13.90 11.69 -58.00 -0.68 -14.57 16 10 C 0.35 12.63 6.71 260.11 1.75 14.38 16 11 N -0.46 -17.40 4.64 -706.14 -3.28 -20.68 16 12 C 0.08 3.08 5.09 86.33 0.44 3.52 16 13 C -0.11 -3.93 6.09 30.65 0.19 -3.75 16 14 C -0.11 -5.01 5.03 30.67 0.15 -4.86 16 15 C 0.06 2.98 2.26 -11.49 -0.03 2.96 16 16 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 17 C -0.54 -29.10 8.56 25.60 0.22 -28.88 16 18 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 19 C 0.02 1.17 5.31 84.65 0.45 1.61 16 20 N -0.91 -50.79 11.36 21.45 0.24 -50.54 16 21 Si 0.95 42.85 29.54 68.60 2.03 44.87 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.10 4.13 4.62 86.33 0.40 4.53 16 26 N -0.46 -13.14 3.21 -538.18 -1.73 -14.87 16 27 C 0.07 1.30 9.42 127.77 1.20 2.51 16 28 H 0.25 1.22 7.80 -4.40 -0.03 1.19 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.07 0.98 5.78 -2.39 -0.01 0.97 16 32 H 0.09 1.17 7.04 -2.39 -0.02 1.16 16 33 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.02 7.23 -2.39 -0.02 1.01 16 36 H 0.07 0.89 5.55 -2.39 -0.01 0.87 16 37 H 0.08 2.65 8.10 -2.39 -0.02 2.63 16 38 H 0.04 1.43 8.06 -2.39 -0.02 1.41 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.07 3.57 6.16 -2.38 -0.01 3.56 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 2.48 8.10 -2.39 -0.02 2.46 16 46 H 0.10 1.59 7.64 -2.39 -0.02 1.57 16 47 H 0.11 1.57 5.31 -2.39 -0.01 1.56 16 48 H 0.09 2.04 8.11 -2.39 -0.02 2.02 16 Total: -1.00 -66.70 378.01 5.63 -61.07 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.93 Total: 14.58 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 8.67 Total: -8.09 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -6.01 Total: -112.43 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.70 5.63 -61.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338504021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.959 kcal (2) G-P(sol) polarization free energy of solvation -66.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds