Wall clock time and date at job start Tue Mar 31 2020 11:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47136 * 186.24408 * 3 2 1 5 5 C 1.52996 * 109.47254 * 299.99825 * 4 3 2 6 6 C 1.53004 * 109.47047 * 60.00064 * 4 3 2 7 7 C 1.50700 * 109.47113 * 179.97438 * 4 3 2 8 8 N 1.30299 * 126.34772 * 6.23402 * 7 4 3 9 9 N 1.28531 * 110.04925 * 179.82163 * 8 7 4 10 10 C 1.31215 * 109.86369 * 0.45305 * 9 8 7 11 11 N 1.38580 * 126.47339 * 179.69167 * 10 9 8 12 12 C 1.46845 * 110.99914 * 236.08907 * 11 10 9 13 13 C 1.53045 * 109.51990 * 185.83881 * 12 11 10 14 14 C 1.53114 * 109.27771 * 300.82091 * 13 12 11 15 15 C 1.53120 * 109.16204 * 57.65765 * 14 13 12 16 16 H 1.08999 * 109.50817 * 62.28388 * 15 14 13 17 17 C 1.50703 * 109.50215 * 182.36542 * 15 14 13 18 18 H 1.08001 * 119.99727 * 120.00235 * 17 15 14 19 19 C 1.37880 * 119.99924 * 299.99293 * 17 15 14 20 20 N 1.31513 * 119.99822 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99894 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47243 * 60.00317 * 21 19 17 23 23 H 1.48498 * 109.46879 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47105 * 300.00048 * 21 19 17 25 25 C 1.46848 * 110.99985 * 0.30261 * 11 10 9 26 26 N 1.36455 * 107.05187 * 359.72779 * 10 9 8 27 27 C 1.46502 * 127.13401 * 179.97438 * 26 10 9 28 28 H 4.44650 * 5.63411 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47031 * 66.23834 * 3 2 1 30 30 H 1.09004 * 109.46958 * 306.23972 * 3 2 1 31 31 H 1.09003 * 109.47079 * 65.01147 * 5 4 3 32 32 H 1.08998 * 109.47462 * 185.00974 * 5 4 3 33 33 H 1.08997 * 109.47310 * 305.01070 * 5 4 3 34 34 H 1.08999 * 109.47199 * 60.00150 * 6 4 3 35 35 H 1.09001 * 109.46811 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47163 * 299.99749 * 6 4 3 37 37 H 1.08991 * 109.46562 * 305.85213 * 12 11 10 38 38 H 1.09000 * 109.46584 * 65.82798 * 12 11 10 39 39 H 1.09000 * 109.49944 * 60.76341 * 13 12 11 40 40 H 1.08995 * 109.50129 * 180.88129 * 13 12 11 41 41 H 1.09007 * 109.51940 * 177.55978 * 14 13 12 42 42 H 1.08997 * 109.52514 * 297.75005 * 14 13 12 43 43 H 0.96999 * 119.99664 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.45830 * 294.17700 * 25 11 10 45 45 H 1.08999 * 109.46859 * 54.13792 * 25 11 10 46 46 H 1.08995 * 109.47266 * 271.50676 * 27 26 10 47 47 H 1.09003 * 109.46747 * 31.50492 * 27 26 10 48 48 H 1.08998 * 109.46824 * 151.50421 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4348 0.1569 5 6 2.6450 2.2874 -1.0065 6 6 2.6451 2.0156 1.4772 7 6 4.6623 1.4354 0.1575 8 7 5.4351 0.4110 -0.0688 9 7 6.6686 0.7645 0.0060 10 6 6.7496 2.0417 0.2957 11 7 7.9127 2.7762 0.4635 12 6 7.9374 3.4295 1.7783 13 6 9.1607 4.3445 1.8718 14 6 10.4305 3.5130 1.6703 15 6 10.3576 2.8047 0.3147 16 1 10.3172 3.5473 -0.4822 17 6 11.5772 1.9382 0.1336 18 1 11.4668 0.8728 -0.0055 19 6 12.8338 2.5054 0.1452 20 7 12.9681 3.8026 0.3149 21 14 14.3455 1.4314 -0.0800 22 1 14.2738 0.7453 -1.3951 23 1 15.5653 2.2766 -0.0279 24 1 14.3990 0.4184 1.0046 25 6 9.0997 1.9344 0.2663 26 7 5.4722 2.5098 0.4015 27 6 5.0551 3.8793 0.7126 28 1 -1.0503 -0.0004 0.0002 29 1 3.0095 -0.4132 -0.9405 30 1 3.0096 -0.6067 0.8289 31 1 1.5587 2.3601 -0.9545 32 1 3.0793 3.2851 -0.9436 33 1 2.9334 1.8244 -1.9501 34 1 3.0087 1.4082 2.3060 35 1 3.0076 3.0375 1.5887 36 1 1.5551 2.0152 1.4772 37 1 7.0310 4.0209 1.9072 38 1 7.9905 2.6714 2.5597 39 1 9.1014 5.1113 1.0994 40 1 9.1873 4.8173 2.8535 41 1 11.3019 4.1675 1.6929 42 1 10.5101 2.7712 2.4649 43 1 13.8522 4.2016 0.3235 44 1 9.1472 1.1832 1.0548 45 1 9.0373 1.4398 -0.7029 46 1 4.9770 3.9987 1.7931 47 1 5.7918 4.5811 0.3217 48 1 4.0861 4.0769 0.2542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338504024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:26 Heat of formation + Delta-G solvation = 130.629820 kcal Electronic energy + Delta-G solvation = -27131.871971 eV Core-core repulsion = 23610.628198 eV Total energy + Delta-G solvation = -3521.243773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.86511 -38.60665 -37.71992 -34.99391 -33.82545 -32.70695 -31.86342 -30.02073 -28.75984 -27.86519 -27.67707 -27.49876 -25.10012 -23.78070 -22.91729 -21.47190 -20.81680 -19.84920 -18.75575 -17.92990 -17.19464 -16.25085 -16.24056 -15.61532 -15.53268 -14.84826 -14.68380 -14.52845 -14.13219 -13.98745 -13.48595 -13.32138 -13.08654 -12.99802 -12.75611 -12.62471 -12.54992 -12.22327 -12.05235 -11.90099 -11.49950 -11.48086 -11.20745 -10.94869 -10.84748 -10.73604 -10.45243 -10.28979 -10.27258 -10.16440 -10.00266 -9.92767 -9.68353 -9.40973 -9.22838 -8.78587 -8.33323 -7.78623 -6.01226 -4.06740 1.95823 2.31752 2.65747 2.66058 3.09189 3.33917 3.37634 3.41679 3.92815 4.06125 4.24113 4.45647 4.51288 4.54214 4.60086 4.82972 4.92180 5.13028 5.18859 5.25349 5.28769 5.32101 5.40850 5.46460 5.52644 5.56471 5.60586 5.72208 5.75154 5.76772 5.84660 5.91654 5.94192 6.02278 6.16130 6.31185 6.38897 6.45532 6.59675 6.77912 6.86731 6.99931 7.22737 7.34606 7.41146 7.64219 7.71897 7.96951 8.07997 8.40400 8.96245 9.05484 9.57891 11.05215 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002901 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.496137 B = 9650.452498 C =10310.844600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.169 4.169 3 C 0.005 3.995 4 C 0.040 3.960 5 C -0.145 4.145 6 C -0.149 4.149 7 C 0.165 3.835 8 N -0.279 5.279 9 N -0.324 5.324 10 C 0.379 3.621 11 N -0.452 5.452 12 C 0.060 3.940 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.055 3.945 16 H 0.036 0.964 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.084 3.916 26 N -0.484 5.484 27 C 0.071 3.929 28 H 0.215 0.785 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.035 0.965 43 H 0.261 0.739 44 H 0.041 0.959 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.918 1.997 2.888 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.170 4.170 3 C -0.032 4.032 4 C 0.037 3.963 5 C -0.203 4.203 6 C -0.207 4.207 7 C -0.104 4.104 8 N -0.117 5.117 9 N -0.169 5.169 10 C 0.023 3.977 11 N -0.175 5.175 12 C -0.067 4.067 13 C -0.154 4.154 14 C -0.153 4.153 15 C 0.036 3.964 16 H 0.054 0.946 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.041 4.041 26 N -0.180 5.180 27 C -0.072 4.072 28 H 0.232 0.768 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.251 1.121 2.243 22.391 hybrid contribution 0.313 0.393 0.691 0.855 sum -21.937 1.514 2.934 22.184 Atomic orbital electron populations 1.24827 0.95821 1.00913 1.02101 1.22959 0.94216 1.00110 0.99669 1.18611 0.84257 0.95230 1.05092 1.18755 0.83884 0.96453 0.97220 1.22008 1.01556 0.99241 0.97495 1.22064 1.01872 1.01047 0.95692 1.24194 0.94983 0.83989 1.07185 1.73911 0.96559 1.23617 1.17650 1.74727 1.11127 1.06760 1.24284 1.23098 0.84263 0.89641 1.00693 1.58845 0.99027 1.29721 1.29916 1.22316 1.00046 0.97345 0.87010 1.21716 0.95099 0.98053 1.00551 1.21733 0.96084 0.98838 0.98636 1.18745 0.89339 0.94155 0.94208 0.94592 1.21047 0.90454 0.94076 1.49606 0.92463 1.24913 0.98892 0.94965 0.94980 1.69863 1.23189 1.09830 1.50009 0.86636 0.82061 0.80340 0.78860 1.20181 1.21350 1.20272 1.22415 0.86290 0.93976 1.01422 1.45868 1.05724 1.10638 1.55775 1.22254 1.02640 0.80154 1.02134 0.76794 0.88231 0.88600 0.91114 0.92333 0.91620 0.91888 0.92150 0.91052 0.91895 0.94152 0.91674 0.92537 0.88503 0.94633 0.92946 0.94085 0.90551 0.90481 0.88626 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.17 -1.59 10.89 -37.12 -0.40 -1.99 16 3 C 0.01 0.05 4.30 -29.52 -0.13 -0.08 16 4 C 0.04 0.40 0.53 -155.66 -0.08 0.32 16 5 C -0.15 -1.26 8.03 37.16 0.30 -0.96 16 6 C -0.15 -1.23 8.04 37.16 0.30 -0.93 16 7 C 0.16 2.31 6.35 -154.01 -0.98 1.33 16 8 N -0.28 -4.95 11.51 32.99 0.38 -4.57 16 9 N -0.32 -6.55 11.24 30.31 0.34 -6.21 16 10 C 0.38 6.87 7.21 -318.88 -2.30 4.57 16 11 N -0.45 -8.49 4.70 -174.55 -0.82 -9.31 16 12 C 0.06 0.97 5.30 -3.83 -0.02 0.95 16 13 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 14 C -0.11 -2.57 5.02 -26.61 -0.13 -2.71 16 15 C 0.05 1.33 2.26 -91.69 -0.21 1.12 16 16 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.51 -13.93 8.57 -34.44 -0.29 -14.23 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -24.77 11.35 55.43 0.63 -24.14 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.08 1.85 4.10 -3.83 -0.02 1.84 16 26 N -0.48 -6.80 3.21 -121.46 -0.39 -7.19 16 27 C 0.07 0.67 7.70 59.85 0.46 1.13 16 28 H 0.22 0.99 7.80 -54.08 -0.42 0.57 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.53 7.41 -51.93 -0.38 0.14 16 32 H 0.06 0.46 5.76 -51.93 -0.30 0.17 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.43 5.49 -51.93 -0.29 0.14 16 36 H 0.07 0.52 7.23 -51.93 -0.38 0.14 16 37 H 0.06 0.83 5.22 -51.93 -0.27 0.55 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.43 6.15 -51.92 -0.32 2.11 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.08 1.78 7.92 -51.93 -0.41 1.37 16 46 H 0.08 0.60 7.50 -51.93 -0.39 0.21 16 47 H 0.10 0.93 7.75 -51.93 -0.40 0.53 16 48 H 0.09 0.64 4.83 -51.93 -0.25 0.39 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -31.02 372.37 -10.04 -41.06 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -7.58 Total: -0.09 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -3.19 Total: -11.36 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.14 Total: -51.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.02 -10.04 -41.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338504024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.690 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds