Wall clock time and date at job start Tue Mar 31 2020 11:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47136 * 186.24408 * 3 2 1 5 5 C 1.52996 * 109.47254 * 299.99825 * 4 3 2 6 6 C 1.53004 * 109.47047 * 60.00064 * 4 3 2 7 7 C 1.50700 * 109.47113 * 179.97438 * 4 3 2 8 8 N 1.30299 * 126.34772 * 6.23402 * 7 4 3 9 9 N 1.28531 * 110.04925 * 179.82163 * 8 7 4 10 10 C 1.31215 * 109.86369 * 0.45305 * 9 8 7 11 11 N 1.38580 * 126.47339 * 179.69167 * 10 9 8 12 12 C 1.46845 * 110.99914 * 236.08907 * 11 10 9 13 13 C 1.53045 * 109.51990 * 185.83881 * 12 11 10 14 14 C 1.53114 * 109.27771 * 300.82091 * 13 12 11 15 15 C 1.53120 * 109.16204 * 57.65765 * 14 13 12 16 16 H 1.08999 * 109.50817 * 62.28388 * 15 14 13 17 17 C 1.50703 * 109.50215 * 182.36542 * 15 14 13 18 18 H 1.08001 * 119.99727 * 120.00235 * 17 15 14 19 19 C 1.37880 * 119.99924 * 299.99293 * 17 15 14 20 20 N 1.31513 * 119.99822 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 119.99894 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47243 * 60.00317 * 21 19 17 23 23 H 1.48498 * 109.46879 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47105 * 300.00048 * 21 19 17 25 25 C 1.46848 * 110.99985 * 0.30261 * 11 10 9 26 26 N 1.36455 * 107.05187 * 359.72779 * 10 9 8 27 27 C 1.46502 * 127.13401 * 179.97438 * 26 10 9 28 28 H 4.44650 * 5.63411 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47031 * 66.23834 * 3 2 1 30 30 H 1.09004 * 109.46958 * 306.23972 * 3 2 1 31 31 H 1.09003 * 109.47079 * 65.01147 * 5 4 3 32 32 H 1.08998 * 109.47462 * 185.00974 * 5 4 3 33 33 H 1.08997 * 109.47310 * 305.01070 * 5 4 3 34 34 H 1.08999 * 109.47199 * 60.00150 * 6 4 3 35 35 H 1.09001 * 109.46811 * 180.02562 * 6 4 3 36 36 H 1.08998 * 109.47163 * 299.99749 * 6 4 3 37 37 H 1.08991 * 109.46562 * 305.85213 * 12 11 10 38 38 H 1.09000 * 109.46584 * 65.82798 * 12 11 10 39 39 H 1.09000 * 109.49944 * 60.76341 * 13 12 11 40 40 H 1.08995 * 109.50129 * 180.88129 * 13 12 11 41 41 H 1.09007 * 109.51940 * 177.55978 * 14 13 12 42 42 H 1.08997 * 109.52514 * 297.75005 * 14 13 12 43 43 H 0.96999 * 119.99664 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.45830 * 294.17700 * 25 11 10 45 45 H 1.08999 * 109.46859 * 54.13792 * 25 11 10 46 46 H 1.08995 * 109.47266 * 271.50676 * 27 26 10 47 47 H 1.09003 * 109.46747 * 31.50492 * 27 26 10 48 48 H 1.08998 * 109.46824 * 151.50421 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4348 0.1569 5 6 2.6450 2.2874 -1.0065 6 6 2.6451 2.0156 1.4772 7 6 4.6623 1.4354 0.1575 8 7 5.4351 0.4110 -0.0688 9 7 6.6686 0.7645 0.0060 10 6 6.7496 2.0417 0.2957 11 7 7.9127 2.7762 0.4635 12 6 7.9374 3.4295 1.7783 13 6 9.1607 4.3445 1.8718 14 6 10.4305 3.5130 1.6703 15 6 10.3576 2.8047 0.3147 16 1 10.3172 3.5473 -0.4822 17 6 11.5772 1.9382 0.1336 18 1 11.4668 0.8728 -0.0055 19 6 12.8338 2.5054 0.1452 20 7 12.9681 3.8026 0.3149 21 14 14.3455 1.4314 -0.0800 22 1 14.2738 0.7453 -1.3951 23 1 15.5653 2.2766 -0.0279 24 1 14.3990 0.4184 1.0046 25 6 9.0997 1.9344 0.2663 26 7 5.4722 2.5098 0.4015 27 6 5.0551 3.8793 0.7126 28 1 -1.0503 -0.0004 0.0002 29 1 3.0095 -0.4132 -0.9405 30 1 3.0096 -0.6067 0.8289 31 1 1.5587 2.3601 -0.9545 32 1 3.0793 3.2851 -0.9436 33 1 2.9334 1.8244 -1.9501 34 1 3.0087 1.4082 2.3060 35 1 3.0076 3.0375 1.5887 36 1 1.5551 2.0152 1.4772 37 1 7.0310 4.0209 1.9072 38 1 7.9905 2.6714 2.5597 39 1 9.1014 5.1113 1.0994 40 1 9.1873 4.8173 2.8535 41 1 11.3019 4.1675 1.6929 42 1 10.5101 2.7712 2.4649 43 1 13.8522 4.2016 0.3235 44 1 9.1472 1.1832 1.0548 45 1 9.0373 1.4398 -0.7029 46 1 4.9770 3.9987 1.7931 47 1 5.7918 4.5811 0.3217 48 1 4.0861 4.0769 0.2542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338504024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:25 Heat of formation + Delta-G solvation = 115.029240 kcal Electronic energy + Delta-G solvation = -27132.548463 eV Core-core repulsion = 23610.628198 eV Total energy + Delta-G solvation = -3521.920265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.10748 -40.09092 -38.64174 -36.24983 -35.46097 -33.81661 -33.21188 -31.82778 -29.99541 -28.79643 -28.38723 -28.28235 -27.04946 -25.34565 -24.12056 -22.97198 -22.18804 -20.86892 -20.41186 -18.83494 -18.53030 -17.82023 -17.42832 -16.95600 -16.68948 -16.34535 -15.76330 -15.63217 -15.52699 -15.09607 -14.79684 -14.49010 -14.30865 -14.21095 -14.15356 -13.83736 -13.56842 -13.45898 -12.94486 -12.88139 -12.86836 -12.69715 -12.62854 -12.45492 -12.23745 -12.16374 -11.93228 -11.83725 -11.67476 -11.35655 -11.21493 -11.08374 -10.99271 -10.94498 -10.85126 -10.63502 -10.39308 -9.21948 -8.10969 -6.23777 0.75892 1.20854 1.42077 1.42878 1.50827 1.79515 1.96468 2.01157 2.41854 2.71136 3.10500 3.16708 3.46659 3.64864 3.81984 3.85077 3.88307 4.04565 4.05161 4.08044 4.26022 4.33871 4.41884 4.48875 4.54200 4.58071 4.64056 4.71697 4.74294 4.77048 4.86150 4.88768 4.93801 4.96210 4.98044 5.01579 5.06703 5.20205 5.24860 5.26864 5.28281 5.42519 5.60951 5.64798 5.72164 5.97422 6.11208 6.25458 6.36486 6.77963 6.84341 7.43461 7.76928 8.93794 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002901 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.496137 B = 9650.452498 C =10310.844600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.207 4.207 3 C 0.009 3.991 4 C 0.041 3.959 5 C -0.141 4.141 6 C -0.144 4.144 7 C 0.189 3.811 8 N -0.320 5.320 9 N -0.371 5.371 10 C 0.362 3.638 11 N -0.453 5.453 12 C 0.062 3.938 13 C -0.106 4.106 14 C -0.108 4.108 15 C 0.056 3.944 16 H 0.006 0.994 17 C -0.540 4.540 18 H 0.046 0.954 19 C 0.021 3.979 20 N -0.909 5.909 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.273 1.273 25 C 0.107 3.893 26 N -0.475 5.475 27 C 0.055 3.945 28 H 0.247 0.753 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.025 0.975 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.982 3.590 3.914 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C -0.028 4.028 4 C 0.038 3.962 5 C -0.199 4.199 6 C -0.202 4.202 7 C -0.080 4.080 8 N -0.158 5.158 9 N -0.215 5.215 10 C 0.004 3.996 11 N -0.176 5.176 12 C -0.064 4.064 13 C -0.143 4.143 14 C -0.147 4.147 15 C 0.037 3.963 16 H 0.024 0.976 17 C -0.578 4.578 18 H 0.064 0.936 19 C -0.178 4.178 20 N -0.548 5.548 21 Si 0.777 3.223 22 H -0.201 1.201 23 H -0.204 1.204 24 H -0.198 1.198 25 C -0.020 4.020 26 N -0.169 5.169 27 C -0.085 4.085 28 H 0.263 0.737 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.122 0.878 47 H 0.115 0.885 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.342 2.732 3.275 25.699 hybrid contribution 1.115 -0.120 0.347 1.174 sum -24.227 2.611 3.622 24.635 Atomic orbital electron populations 1.25601 0.96484 0.98833 0.99961 1.22856 0.94194 1.02042 1.01591 1.18427 0.85466 0.95186 1.03764 1.19000 0.80904 0.96982 0.99275 1.21993 1.02795 0.99178 0.95910 1.22052 1.02846 1.01572 0.93712 1.25021 0.96447 0.83019 1.03542 1.73833 0.96229 1.25510 1.20215 1.74602 1.12850 1.08560 1.25508 1.22916 0.85307 0.89544 1.01852 1.58768 0.98225 1.29029 1.31570 1.22415 1.01304 0.97137 0.85553 1.21608 0.92902 0.97433 1.02406 1.21525 0.97867 0.98468 0.96794 1.18625 0.89688 0.93492 0.94455 0.97619 1.21368 0.92168 0.94013 1.50263 0.93608 1.25604 1.01373 0.96202 0.94644 1.69976 1.23796 1.10907 1.50158 0.85716 0.78959 0.78888 0.78723 1.20059 1.20410 1.19840 1.21876 0.87210 0.93369 0.99517 1.46058 1.03943 1.12281 1.54661 1.22733 1.04124 0.77368 1.04286 0.73662 0.89892 0.89909 0.89172 0.91101 0.93065 0.92896 0.90350 0.89435 0.87531 0.94823 0.91616 0.89251 0.91237 0.95644 0.92801 0.95705 0.92942 0.87808 0.88472 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 19.25 74.32 1.43 -0.98 16 2 C -0.21 -3.47 10.89 31.13 0.34 -3.13 16 3 C 0.01 0.18 4.30 28.79 0.12 0.30 16 4 C 0.04 0.75 0.53 -52.93 -0.03 0.72 16 5 C -0.14 -2.06 8.03 71.98 0.58 -1.48 16 6 C -0.14 -1.90 8.04 71.98 0.58 -1.32 16 7 C 0.19 5.16 6.35 137.64 0.87 6.04 16 8 N -0.32 -11.74 11.51 -49.54 -0.57 -12.31 16 9 N -0.37 -15.61 11.24 -58.00 -0.65 -16.26 16 10 C 0.36 13.17 7.21 260.11 1.88 15.05 16 11 N -0.45 -17.15 4.70 -706.15 -3.32 -20.46 16 12 C 0.06 1.92 5.30 86.33 0.46 2.38 16 13 C -0.11 -3.58 6.09 30.65 0.19 -3.39 16 14 C -0.11 -4.97 5.02 30.67 0.15 -4.81 16 15 C 0.06 2.89 2.26 -11.49 -0.03 2.86 16 16 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 17 C -0.54 -30.65 8.57 25.60 0.22 -30.43 16 18 H 0.05 2.63 7.74 -2.91 -0.02 2.60 16 19 C 0.02 1.19 5.30 84.66 0.45 1.64 16 20 N -0.91 -51.79 11.35 21.45 0.24 -51.55 16 21 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 C 0.11 4.96 4.10 86.32 0.35 5.32 16 26 N -0.47 -12.54 3.21 -538.18 -1.73 -14.27 16 27 C 0.06 0.83 7.70 127.77 0.98 1.81 16 28 H 0.25 1.15 7.80 -4.41 -0.03 1.11 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.09 1.01 7.41 -2.39 -0.02 0.99 16 32 H 0.07 0.85 5.76 -2.39 -0.01 0.84 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.75 5.49 -2.39 -0.01 0.73 16 36 H 0.09 0.92 7.23 -2.39 -0.02 0.91 16 37 H 0.11 2.40 5.22 -2.39 -0.01 2.38 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.09 2.47 8.14 -2.39 -0.02 2.46 16 41 H 0.07 3.57 6.15 -2.38 -0.01 3.56 16 42 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 44 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.05 2.63 7.92 -2.39 -0.02 2.61 16 46 H 0.10 1.07 7.50 -2.39 -0.02 1.05 16 47 H 0.10 1.52 7.75 -2.39 -0.02 1.50 16 48 H 0.12 1.11 4.83 -2.39 -0.01 1.10 16 Total: -1.00 -72.40 372.37 5.50 -66.91 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.94 Total: 10.98 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 8.55 Total: -9.43 kcal Atomic # 7 Polarization: -108.83 SS G_CDS: -6.02 Total: -114.85 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -72.40 5.50 -66.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338504024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.936 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds