Wall clock time and date at job start Tue Mar 31 2020 11:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46960 * 127.23517 * 3 2 1 5 5 C 1.53001 * 109.46894 * 59.99757 * 4 3 2 6 6 C 1.52995 * 109.47407 * 300.00211 * 4 3 2 7 7 C 1.50695 * 109.47156 * 180.02562 * 4 3 2 8 8 N 1.30299 * 126.34897 * 5.67041 * 7 4 3 9 9 N 1.28526 * 110.05596 * 179.97438 * 8 7 4 10 10 C 1.31224 * 109.86085 * 0.02562 * 9 8 7 11 11 N 1.38578 * 126.47262 * 179.97438 * 10 9 8 12 12 C 1.46891 * 111.00416 * 266.14091 * 11 10 9 13 13 C 1.46903 * 110.99853 * 30.09835 * 11 10 9 14 14 H 1.08998 * 109.47148 * 54.99800 * 13 11 10 15 15 C 1.53000 * 109.46843 * 294.99450 * 13 11 10 16 16 C 1.50701 * 109.47001 * 174.99662 * 13 11 10 17 17 H 1.08002 * 119.99911 * 115.01644 * 16 13 11 18 18 C 1.37871 * 120.00029 * 295.01969 * 16 13 11 19 19 N 1.31513 * 120.00056 * 179.49476 * 18 16 13 20 20 Si 1.86799 * 120.00197 * 359.49664 * 18 16 13 21 21 H 1.48498 * 109.47466 * 91.56166 * 20 18 16 22 22 H 1.48498 * 109.47291 * 211.56822 * 20 18 16 23 23 H 1.48499 * 109.47009 * 331.56276 * 20 18 16 24 24 N 1.36455 * 107.05158 * 359.97438 * 10 9 8 25 25 C 1.46498 * 127.13346 * 179.97438 * 24 10 9 26 26 C 1.50700 * 109.47352 * 275.47081 * 25 24 10 27 27 C 1.30999 * 119.99931 * 125.20865 * 26 25 24 28 28 H 4.44650 * 5.63426 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.47365 * 7.24231 * 3 2 1 30 30 H 1.08992 * 109.47543 * 247.23790 * 3 2 1 31 31 H 1.09005 * 109.47123 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47410 * 300.00290 * 5 4 3 33 33 H 1.09000 * 109.46878 * 60.00281 * 5 4 3 34 34 H 1.09000 * 109.47238 * 305.38522 * 6 4 3 35 35 H 1.09005 * 109.47579 * 65.38600 * 6 4 3 36 36 H 1.09001 * 109.47538 * 185.38137 * 6 4 3 37 37 H 1.09003 * 109.47124 * 54.70042 * 12 11 10 38 38 H 1.08996 * 109.47559 * 174.70365 * 12 11 10 39 39 H 1.09003 * 109.47126 * 294.70606 * 12 11 10 40 40 H 1.08999 * 109.47363 * 307.70408 * 15 13 11 41 41 H 1.08999 * 109.47077 * 67.70594 * 15 13 11 42 42 H 1.08998 * 109.47063 * 187.70371 * 15 13 11 43 43 H 0.97005 * 120.00159 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47451 * 35.47539 * 25 24 10 45 45 H 1.09007 * 109.47004 * 155.47511 * 25 24 10 46 46 H 1.08002 * 119.99917 * 305.21327 * 26 25 24 47 47 H 1.07996 * 120.00155 * 180.02562 * 27 26 25 48 48 H 1.08002 * 120.00153 * 0.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8737 -1.1485 5 6 2.6448 2.3045 -0.9668 6 6 2.6458 0.3154 -2.4786 7 6 4.6625 0.8739 -1.1489 8 7 5.4351 0.1595 -0.3805 9 7 6.6687 0.4048 -0.6453 10 6 6.7499 1.2967 -1.6044 11 7 7.9132 1.8095 -2.1561 12 6 8.3052 3.0590 -1.4906 13 6 8.9998 0.8223 -2.1047 14 1 8.6765 -0.0995 -2.5881 15 6 9.3586 0.5343 -0.6455 16 6 10.2084 1.3678 -2.8208 17 1 11.1153 1.5720 -2.2711 18 6 10.1562 1.6064 -4.1778 19 7 11.2077 2.0918 -4.8010 20 14 8.5921 1.2401 -5.1311 21 1 7.7398 2.4555 -5.1698 22 1 8.9403 0.8353 -6.5167 23 1 7.8528 0.1381 -4.4646 24 7 5.4727 1.6238 -1.9559 25 6 5.0558 2.5806 -2.9840 26 6 5.0427 3.9703 -2.4011 27 6 5.7262 4.9283 -2.9765 28 1 -1.0502 0.0000 0.0003 29 1 3.0099 -1.0187 -0.1296 30 1 3.0092 0.3984 0.9475 31 1 3.0082 2.9267 -1.7847 32 1 1.5549 2.3040 -0.9667 33 1 3.0080 2.7023 -0.0192 34 1 2.9287 -0.7337 -2.5646 35 1 1.5600 0.4033 -2.5174 36 1 3.0854 0.8789 -3.3016 37 1 8.3838 2.8895 -0.4167 38 1 9.2688 3.3900 -1.8778 39 1 7.5536 3.8246 -1.6835 40 1 9.5498 1.4733 -0.1262 41 1 8.5305 0.0146 -0.1635 42 1 10.2510 -0.0903 -0.6072 43 1 11.1709 2.2600 -5.7556 44 1 5.7547 2.5437 -3.8196 45 1 4.0561 2.3244 -3.3348 46 1 4.4698 4.1763 -1.5090 47 1 5.7171 5.9241 -2.5586 48 1 6.2988 4.7224 -3.8688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338690210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:36 Heat of formation + Delta-G solvation = 170.739884 kcal Electronic energy + Delta-G solvation = -28266.375946 eV Core-core repulsion = 24746.871476 eV Total energy + Delta-G solvation = -3519.504470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67339 -38.09757 -37.12209 -36.01486 -32.92586 -32.65327 -32.25314 -29.83248 -28.91051 -27.74431 -27.57723 -26.71995 -25.55823 -25.08717 -22.56626 -21.34105 -20.58843 -19.40841 -19.30930 -17.85885 -16.92306 -16.78910 -15.96646 -15.65763 -15.30709 -15.07066 -14.67336 -14.44687 -14.11143 -13.72977 -13.68717 -13.37778 -13.23613 -12.81929 -12.61392 -12.45703 -12.21645 -12.08674 -11.94537 -11.71694 -11.58166 -11.40773 -11.32596 -11.19872 -10.82163 -10.73172 -10.59405 -10.44022 -10.21012 -10.16945 -9.83327 -9.75726 -9.58455 -9.46152 -9.13421 -8.77031 -8.63043 -7.62021 -6.16853 -4.22804 1.88401 2.18364 2.58854 2.72419 2.87595 3.28660 3.30893 3.37321 3.48231 4.05881 4.32962 4.41207 4.52533 4.63675 4.67011 4.70084 4.78225 4.94734 4.99342 5.30035 5.36911 5.44398 5.48285 5.52289 5.66093 5.69569 5.71187 5.73845 5.81458 5.85228 5.88989 6.03708 6.04661 6.14240 6.20400 6.25740 6.41700 6.44367 6.56828 6.65475 6.69154 6.83801 6.95945 7.23604 7.30674 7.47625 7.55347 7.72797 8.14348 8.47803 8.87268 9.23790 9.47291 10.92875 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.004609 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.955507 B = 6073.981360 C = 6495.386906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.167 4.167 3 C 0.006 3.994 4 C 0.040 3.960 5 C -0.153 4.153 6 C -0.146 4.146 7 C 0.163 3.837 8 N -0.289 5.289 9 N -0.320 5.320 10 C 0.381 3.619 11 N -0.466 5.466 12 C 0.040 3.960 13 C 0.184 3.816 14 H 0.047 0.953 15 C -0.174 4.174 16 C -0.507 4.507 17 H 0.079 0.921 18 C 0.085 3.915 19 N -0.891 5.891 20 Si 0.907 3.093 21 H -0.278 1.278 22 H -0.304 1.304 23 H -0.271 1.271 24 N -0.468 5.468 25 C 0.132 3.868 26 C -0.188 4.188 27 C -0.149 4.149 28 H 0.215 0.785 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.076 0.924 42 H 0.048 0.952 43 H 0.265 0.735 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.105 0.895 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.088 3.290 4.472 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.168 4.168 3 C -0.031 4.031 4 C 0.037 3.963 5 C -0.211 4.211 6 C -0.204 4.204 7 C -0.105 4.105 8 N -0.128 5.128 9 N -0.163 5.163 10 C 0.026 3.974 11 N -0.193 5.193 12 C -0.106 4.106 13 C 0.081 3.919 14 H 0.065 0.935 15 C -0.233 4.233 16 C -0.546 4.546 17 H 0.097 0.903 18 C -0.120 4.120 19 N -0.527 5.527 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.233 1.233 23 H -0.196 1.196 24 N -0.162 5.162 25 C 0.010 3.990 26 C -0.207 4.207 27 C -0.186 4.186 28 H 0.232 0.768 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.606 2.455 4.860 20.348 hybrid contribution -1.065 0.750 -1.003 1.644 sum -20.671 3.205 3.856 21.270 Atomic orbital electron populations 1.24808 0.95805 1.01837 1.01479 1.22995 0.94249 0.99682 0.99831 1.18608 0.84154 1.01621 0.98711 1.18730 0.84183 0.96822 0.96563 1.22185 1.01710 0.94398 1.02774 1.22025 1.01494 1.01816 0.95082 1.24171 0.94903 0.96425 0.94994 1.73903 0.97119 1.20610 1.21198 1.74734 1.10443 1.17830 1.13330 1.23354 0.85599 0.95967 0.92465 1.59953 1.01168 1.07948 1.50248 1.22273 1.02899 0.89329 0.96148 1.19905 0.87523 0.90283 0.94156 0.93473 1.22552 1.01842 1.00856 0.98030 1.20967 0.96363 1.44325 0.92929 0.90332 1.25040 0.96024 0.93163 0.97746 1.69940 1.29529 1.43235 1.10029 0.86329 0.83695 0.79105 0.77140 1.20432 1.23253 1.19588 1.46272 1.06318 1.33252 1.30365 1.21062 1.02350 0.85811 0.89799 1.23084 1.02195 0.94052 1.01390 1.24046 0.95939 0.98613 1.00039 0.76839 0.88319 0.88641 0.91524 0.91233 0.91978 0.91646 0.91152 0.92392 0.95393 0.88193 0.93126 0.94098 0.90527 0.93290 0.92545 0.88004 0.88189 0.86661 0.87681 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.96 19.25 29.55 0.57 -1.39 16 2 C -0.17 -1.73 10.90 -37.12 -0.40 -2.14 16 3 C 0.01 0.07 4.30 -29.52 -0.13 -0.06 16 4 C 0.04 0.46 0.52 -155.66 -0.08 0.38 16 5 C -0.15 -1.50 7.69 37.16 0.29 -1.22 16 6 C -0.15 -1.54 8.01 37.15 0.30 -1.25 16 7 C 0.16 2.57 6.35 -154.01 -0.98 1.60 16 8 N -0.29 -5.47 11.51 32.99 0.38 -5.09 16 9 N -0.32 -6.78 8.91 30.32 0.27 -6.51 16 10 C 0.38 7.75 6.62 -318.87 -2.11 5.64 16 11 N -0.47 -10.04 2.84 -176.08 -0.50 -10.54 16 12 C 0.04 0.79 8.72 60.06 0.52 1.31 16 13 C 0.18 4.41 1.58 -68.86 -0.11 4.30 16 14 H 0.05 1.23 6.78 -51.93 -0.35 0.88 16 15 C -0.17 -3.82 8.48 37.16 0.32 -3.51 16 16 C -0.51 -13.65 7.68 -34.44 -0.26 -13.92 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 19 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 20 Si 0.91 22.15 26.36 -169.99 -4.48 17.67 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.27 -6.75 6.36 56.52 0.36 -6.39 16 24 N -0.47 -7.86 2.79 -115.36 -0.32 -8.18 16 25 C 0.13 1.82 5.62 -5.19 -0.03 1.79 16 26 C -0.19 -2.23 8.08 -36.03 -0.29 -2.52 16 27 C -0.15 -1.69 12.90 29.01 0.37 -1.32 16 28 H 0.21 1.17 7.80 -54.08 -0.42 0.74 16 29 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.62 3.97 -51.93 -0.21 0.42 16 32 H 0.07 0.60 7.23 -51.93 -0.38 0.23 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.63 7.43 -51.93 -0.39 0.25 16 36 H 0.06 0.60 5.72 -51.93 -0.30 0.30 16 37 H 0.03 0.54 6.62 -51.93 -0.34 0.19 16 38 H 0.10 2.13 6.83 -51.93 -0.35 1.78 16 39 H 0.05 0.87 5.76 -51.93 -0.30 0.57 16 40 H 0.04 0.86 6.20 -51.93 -0.32 0.54 16 41 H 0.08 1.69 5.43 -51.93 -0.28 1.40 16 42 H 0.05 1.05 8.13 -51.93 -0.42 0.63 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.10 1.61 7.79 -51.93 -0.40 1.20 16 45 H 0.10 1.11 4.60 -51.93 -0.24 0.87 16 46 H 0.12 1.25 6.89 -52.49 -0.36 0.89 16 47 H 0.10 0.99 8.06 -52.49 -0.42 0.56 16 48 H 0.11 1.33 7.84 -52.49 -0.41 0.92 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -31.09 371.05 -7.60 -38.70 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.19 Total: 3.66 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -2.13 Total: -10.04 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.60 Total: -55.58 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.48 Total: 17.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.09 -7.60 -38.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338690210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.436 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds