Wall clock time and date at job start Tue Mar 31 2020 11:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46960 * 127.23517 * 3 2 1 5 5 C 1.53001 * 109.46894 * 59.99757 * 4 3 2 6 6 C 1.52995 * 109.47407 * 300.00211 * 4 3 2 7 7 C 1.50695 * 109.47156 * 180.02562 * 4 3 2 8 8 N 1.30299 * 126.34897 * 5.67041 * 7 4 3 9 9 N 1.28526 * 110.05596 * 179.97438 * 8 7 4 10 10 C 1.31224 * 109.86085 * 0.02562 * 9 8 7 11 11 N 1.38578 * 126.47262 * 179.97438 * 10 9 8 12 12 C 1.46891 * 111.00416 * 266.14091 * 11 10 9 13 13 C 1.46903 * 110.99853 * 30.09835 * 11 10 9 14 14 H 1.08998 * 109.47148 * 54.99800 * 13 11 10 15 15 C 1.53000 * 109.46843 * 294.99450 * 13 11 10 16 16 C 1.50701 * 109.47001 * 174.99662 * 13 11 10 17 17 H 1.08002 * 119.99911 * 115.01644 * 16 13 11 18 18 C 1.37871 * 120.00029 * 295.01969 * 16 13 11 19 19 N 1.31513 * 120.00056 * 179.49476 * 18 16 13 20 20 Si 1.86799 * 120.00197 * 359.49664 * 18 16 13 21 21 H 1.48498 * 109.47466 * 91.56166 * 20 18 16 22 22 H 1.48498 * 109.47291 * 211.56822 * 20 18 16 23 23 H 1.48499 * 109.47009 * 331.56276 * 20 18 16 24 24 N 1.36455 * 107.05158 * 359.97438 * 10 9 8 25 25 C 1.46498 * 127.13346 * 179.97438 * 24 10 9 26 26 C 1.50700 * 109.47352 * 275.47081 * 25 24 10 27 27 C 1.30999 * 119.99931 * 125.20865 * 26 25 24 28 28 H 4.44650 * 5.63426 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.47365 * 7.24231 * 3 2 1 30 30 H 1.08992 * 109.47543 * 247.23790 * 3 2 1 31 31 H 1.09005 * 109.47123 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47410 * 300.00290 * 5 4 3 33 33 H 1.09000 * 109.46878 * 60.00281 * 5 4 3 34 34 H 1.09000 * 109.47238 * 305.38522 * 6 4 3 35 35 H 1.09005 * 109.47579 * 65.38600 * 6 4 3 36 36 H 1.09001 * 109.47538 * 185.38137 * 6 4 3 37 37 H 1.09003 * 109.47124 * 54.70042 * 12 11 10 38 38 H 1.08996 * 109.47559 * 174.70365 * 12 11 10 39 39 H 1.09003 * 109.47126 * 294.70606 * 12 11 10 40 40 H 1.08999 * 109.47363 * 307.70408 * 15 13 11 41 41 H 1.08999 * 109.47077 * 67.70594 * 15 13 11 42 42 H 1.08998 * 109.47063 * 187.70371 * 15 13 11 43 43 H 0.97005 * 120.00159 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47451 * 35.47539 * 25 24 10 45 45 H 1.09007 * 109.47004 * 155.47511 * 25 24 10 46 46 H 1.08002 * 119.99917 * 305.21327 * 26 25 24 47 47 H 1.07996 * 120.00155 * 180.02562 * 27 26 25 48 48 H 1.08002 * 120.00153 * 0.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.8737 -1.1485 5 6 2.6448 2.3045 -0.9668 6 6 2.6458 0.3154 -2.4786 7 6 4.6625 0.8739 -1.1489 8 7 5.4351 0.1595 -0.3805 9 7 6.6687 0.4048 -0.6453 10 6 6.7499 1.2967 -1.6044 11 7 7.9132 1.8095 -2.1561 12 6 8.3052 3.0590 -1.4906 13 6 8.9998 0.8223 -2.1047 14 1 8.6765 -0.0995 -2.5881 15 6 9.3586 0.5343 -0.6455 16 6 10.2084 1.3678 -2.8208 17 1 11.1153 1.5720 -2.2711 18 6 10.1562 1.6064 -4.1778 19 7 11.2077 2.0918 -4.8010 20 14 8.5921 1.2401 -5.1311 21 1 7.7398 2.4555 -5.1698 22 1 8.9403 0.8353 -6.5167 23 1 7.8528 0.1381 -4.4646 24 7 5.4727 1.6238 -1.9559 25 6 5.0558 2.5806 -2.9840 26 6 5.0427 3.9703 -2.4011 27 6 5.7262 4.9283 -2.9765 28 1 -1.0502 0.0000 0.0003 29 1 3.0099 -1.0187 -0.1296 30 1 3.0092 0.3984 0.9475 31 1 3.0082 2.9267 -1.7847 32 1 1.5549 2.3040 -0.9667 33 1 3.0080 2.7023 -0.0192 34 1 2.9287 -0.7337 -2.5646 35 1 1.5600 0.4033 -2.5174 36 1 3.0854 0.8789 -3.3016 37 1 8.3838 2.8895 -0.4167 38 1 9.2688 3.3900 -1.8778 39 1 7.5536 3.8246 -1.6835 40 1 9.5498 1.4733 -0.1262 41 1 8.5305 0.0146 -0.1635 42 1 10.2510 -0.0903 -0.6072 43 1 11.1709 2.2600 -5.7556 44 1 5.7547 2.5437 -3.8196 45 1 4.0561 2.3244 -3.3348 46 1 4.4698 4.1763 -1.5090 47 1 5.7171 5.9241 -2.5586 48 1 6.2988 4.7224 -3.8688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338690210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:35 Heat of formation + Delta-G solvation = 155.755983 kcal Electronic energy + Delta-G solvation = -28267.025696 eV Core-core repulsion = 24746.871476 eV Total energy + Delta-G solvation = -3520.154221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.07657 -39.43375 -38.48394 -37.13450 -34.61283 -33.86537 -33.38933 -31.63399 -30.33347 -28.63998 -28.37492 -27.83684 -27.49008 -26.77547 -23.77892 -22.96844 -21.62309 -20.98665 -20.46758 -18.93122 -18.57688 -18.15913 -17.29604 -17.11605 -16.59317 -16.18860 -16.08544 -15.60005 -15.50102 -15.17662 -14.96826 -14.69827 -14.54802 -14.19160 -13.90845 -13.58278 -13.53134 -13.42839 -13.00951 -12.94811 -12.91140 -12.76740 -12.52996 -12.44592 -12.36121 -12.21032 -12.11771 -11.96874 -11.77243 -11.39878 -11.11302 -11.08607 -10.94997 -10.89612 -10.80922 -10.49687 -10.25168 -9.26225 -8.32196 -6.42113 0.75445 0.91045 1.32973 1.38346 1.49961 1.58177 1.83714 1.97580 2.01485 2.38430 2.81169 3.07482 3.29102 3.47828 3.61672 3.75769 3.82485 3.85273 4.01523 4.04710 4.13480 4.31176 4.47041 4.49505 4.51653 4.60700 4.66655 4.70728 4.77067 4.80391 4.85260 4.87299 4.90786 4.95350 4.99926 5.03943 5.10771 5.18281 5.23694 5.25199 5.28455 5.38907 5.51127 5.58843 5.63396 5.77480 5.89991 6.27481 6.52565 6.72076 6.78241 7.31322 7.79211 8.81001 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017945 B = 0.004609 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.955507 B = 6073.981360 C = 6495.386906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.206 4.206 3 C 0.012 3.988 4 C 0.040 3.960 5 C -0.147 4.147 6 C -0.143 4.143 7 C 0.188 3.812 8 N -0.320 5.320 9 N -0.347 5.347 10 C 0.359 3.641 11 N -0.468 5.468 12 C 0.048 3.952 13 C 0.195 3.805 14 H 0.025 0.975 15 C -0.162 4.162 16 C -0.507 4.507 17 H 0.046 0.954 18 C 0.043 3.957 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.253 1.253 22 H -0.306 1.306 23 H -0.280 1.280 24 N -0.463 5.463 25 C 0.124 3.876 26 C -0.192 4.192 27 C -0.144 4.144 28 H 0.247 0.753 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.268 0.732 44 H 0.083 0.917 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.129 0.871 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.240 4.432 4.393 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.206 4.206 3 C -0.025 4.025 4 C 0.037 3.963 5 C -0.204 4.204 6 C -0.201 4.201 7 C -0.080 4.080 8 N -0.159 5.159 9 N -0.190 5.190 10 C 0.002 3.998 11 N -0.194 5.194 12 C -0.098 4.098 13 C 0.091 3.909 14 H 0.043 0.957 15 C -0.221 4.221 16 C -0.546 4.546 17 H 0.064 0.936 18 C -0.158 4.158 19 N -0.571 5.571 20 Si 0.790 3.210 21 H -0.178 1.178 22 H -0.234 1.234 23 H -0.206 1.206 24 N -0.156 5.156 25 C 0.003 3.997 26 C -0.211 4.211 27 C -0.182 4.182 28 H 0.263 0.737 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.147 0.853 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -23.776 3.618 4.786 24.521 hybrid contribution 0.120 0.363 -0.891 0.969 sum -23.655 3.981 3.896 24.302 Atomic orbital electron populations 1.25591 0.96478 0.99628 0.99295 1.22871 0.94212 1.01681 1.01825 1.18404 0.85395 1.00624 0.98092 1.18991 0.81117 0.98591 0.97571 1.22156 1.02817 0.92655 1.02821 1.22018 1.02897 1.01010 0.94189 1.25022 0.96448 0.93875 0.92704 1.73853 0.96701 1.22356 1.22940 1.74594 1.11997 1.18320 1.14110 1.23079 0.86231 0.97048 0.93441 1.59548 1.01090 1.07649 1.51123 1.22232 1.02572 0.89220 0.95824 1.19550 0.87197 0.89695 0.94466 0.95717 1.22429 1.01703 1.00992 0.97009 1.20994 0.96524 1.43952 0.93126 0.93602 1.25659 0.98550 0.93039 0.98538 1.70038 1.31455 1.45084 1.10492 0.85468 0.80613 0.79479 0.75422 1.17755 1.23425 1.20602 1.46395 1.05038 1.33529 1.30654 1.21362 1.03289 0.86448 0.88580 1.23069 1.03071 0.92854 1.02102 1.24192 0.94879 0.99755 0.99368 0.73690 0.89797 0.89566 0.90717 0.89387 0.92463 0.92843 0.88930 0.91990 0.95361 0.90353 0.90467 0.93672 0.90236 0.93656 0.92286 0.89880 0.85215 0.85112 0.85341 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 19.25 74.32 1.43 -1.21 16 2 C -0.21 -3.70 10.90 31.12 0.34 -3.36 16 3 C 0.01 0.26 4.30 28.79 0.12 0.38 16 4 C 0.04 0.84 0.52 -52.93 -0.03 0.81 16 5 C -0.15 -2.36 7.69 71.98 0.55 -1.81 16 6 C -0.14 -2.61 8.01 71.98 0.58 -2.03 16 7 C 0.19 5.68 6.35 137.64 0.87 6.55 16 8 N -0.32 -12.03 11.51 -49.54 -0.57 -12.60 16 9 N -0.35 -14.74 8.91 -58.00 -0.52 -15.26 16 10 C 0.36 14.39 6.62 260.11 1.72 16.11 16 11 N -0.47 -20.10 2.84 -711.01 -2.02 -22.12 16 12 C 0.05 1.87 8.72 127.69 1.11 2.99 16 13 C 0.20 9.56 1.58 44.17 0.07 9.63 16 14 H 0.02 1.32 6.78 -2.39 -0.02 1.31 16 15 C -0.16 -7.31 8.48 71.98 0.61 -6.70 16 16 C -0.51 -28.24 7.68 25.60 0.20 -28.04 16 17 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 18 C 0.04 2.44 5.47 84.65 0.46 2.90 16 19 N -0.93 -55.81 13.96 21.44 0.30 -55.51 16 20 Si 0.96 46.10 26.36 68.60 1.81 47.90 16 21 H -0.25 -10.97 7.11 99.48 0.71 -10.27 16 22 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 23 H -0.28 -13.81 6.36 99.48 0.63 -13.17 16 24 N -0.46 -14.80 2.79 -518.90 -1.45 -16.24 16 25 C 0.12 3.09 5.62 85.63 0.48 3.57 16 26 C -0.19 -3.94 8.08 25.65 0.21 -3.74 16 27 C -0.14 -2.85 12.90 67.78 0.87 -1.97 16 28 H 0.25 1.42 7.80 -4.41 -0.03 1.39 16 29 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.08 3.97 -2.38 -0.01 1.07 16 32 H 0.09 1.14 7.23 -2.39 -0.02 1.12 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.30 7.43 -2.38 -0.02 1.29 16 36 H 0.06 1.07 5.72 -2.39 -0.01 1.06 16 37 H 0.03 1.08 6.62 -2.39 -0.02 1.06 16 38 H 0.08 3.39 6.83 -2.39 -0.02 3.37 16 39 H 0.08 2.54 5.76 -2.39 -0.01 2.53 16 40 H 0.04 1.95 6.20 -2.39 -0.01 1.93 16 41 H 0.08 3.57 5.43 -2.39 -0.01 3.56 16 42 H 0.04 2.01 8.13 -2.39 -0.02 1.99 16 43 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 44 H 0.08 2.43 7.79 -2.39 -0.02 2.41 16 45 H 0.13 2.40 4.60 -2.38 -0.01 2.38 16 46 H 0.13 2.32 6.89 -2.91 -0.02 2.30 16 47 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.09 2.11 7.84 -2.91 -0.02 2.09 16 Total: -1.00 -69.39 371.05 8.04 -61.35 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.88 Total: 18.39 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 9.61 Total: -5.91 kcal Atomic # 7 Polarization: -117.47 SS G_CDS: -4.26 Total: -121.73 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.81 Total: 47.90 kcal Total: -69.39 8.04 -61.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338690210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.105 kcal (2) G-P(sol) polarization free energy of solvation -69.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds