Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46988 * 92.69186 * 3 2 1 5 5 C 1.53001 * 109.46941 * 299.99514 * 4 3 2 6 6 C 1.52994 * 109.47531 * 59.99686 * 4 3 2 7 7 C 1.50706 * 109.47017 * 180.02562 * 4 3 2 8 8 N 1.30292 * 126.34621 * 6.47446 * 7 4 3 9 9 N 1.28532 * 110.05333 * 179.97438 * 8 7 4 10 10 C 1.31219 * 109.85763 * 0.02562 * 9 8 7 11 11 N 1.38582 * 126.47163 * 180.02562 * 10 9 8 12 12 C 1.46901 * 110.99599 * 298.81215 * 11 10 9 13 13 C 1.46901 * 110.99931 * 62.76304 * 11 10 9 14 14 H 1.08999 * 109.47543 * 299.99692 * 13 11 10 15 15 C 1.52997 * 109.47149 * 60.00341 * 13 11 10 16 16 C 1.50702 * 109.46833 * 180.02562 * 13 11 10 17 17 H 1.08005 * 120.00319 * 359.97438 * 16 13 11 18 18 C 1.37877 * 120.00230 * 180.02562 * 16 13 11 19 19 N 1.31515 * 119.99735 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00099 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47449 * 90.00117 * 20 18 16 22 22 H 1.48511 * 109.46932 * 209.99704 * 20 18 16 23 23 H 1.48503 * 109.47367 * 329.99193 * 20 18 16 24 24 N 1.36451 * 107.05314 * 359.75166 * 10 9 8 25 25 C 1.46507 * 127.13598 * 180.24644 * 24 10 9 26 26 C 1.50703 * 109.46661 * 276.74270 * 25 24 10 27 27 C 1.31007 * 119.99846 * 119.18024 * 26 25 24 28 28 H 4.44651 * 5.63403 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47276 * 332.69067 * 3 2 1 30 30 H 1.08994 * 109.47006 * 212.68858 * 3 2 1 31 31 H 1.08998 * 109.47359 * 294.92175 * 5 4 3 32 32 H 1.09008 * 109.46706 * 174.92280 * 5 4 3 33 33 H 1.09003 * 109.46888 * 54.92957 * 5 4 3 34 34 H 1.09001 * 109.47402 * 300.00183 * 6 4 3 35 35 H 1.09004 * 109.47056 * 59.99947 * 6 4 3 36 36 H 1.08995 * 109.47393 * 179.97438 * 6 4 3 37 37 H 1.09003 * 109.47460 * 66.44546 * 12 11 10 38 38 H 1.08996 * 109.47156 * 186.44669 * 12 11 10 39 39 H 1.09003 * 109.47091 * 306.44501 * 12 11 10 40 40 H 1.09000 * 109.46672 * 179.97438 * 15 13 11 41 41 H 1.08991 * 109.47260 * 299.99574 * 15 13 11 42 42 H 1.09000 * 109.47103 * 59.99985 * 15 13 11 43 43 H 0.97002 * 119.99836 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46815 * 36.73888 * 25 24 10 45 45 H 1.09000 * 109.47031 * 156.74004 * 25 24 10 46 46 H 1.07993 * 119.99974 * 299.17610 * 26 25 24 47 47 H 1.07995 * 120.00008 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99931 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.0686 -1.4409 5 6 2.6465 -1.1457 -2.2200 6 6 2.6453 1.3500 -2.1028 7 6 4.6630 0.0687 -1.4410 8 7 5.4352 -0.0986 -0.4050 9 7 6.6689 -0.0416 -0.7611 10 6 6.7504 0.1674 -2.0539 11 7 7.9139 0.2865 -2.7974 12 6 8.7160 1.4291 -2.3402 13 6 8.6957 -0.9564 -2.7543 14 1 8.9624 -1.1824 -1.7219 15 6 7.8620 -2.1035 -3.3286 16 6 9.9508 -0.7889 -3.5715 17 1 10.1478 0.1472 -4.0731 18 6 10.8473 -1.8308 -3.6797 19 7 10.6073 -2.9708 -3.0694 20 14 12.4025 -1.6233 -4.6933 21 1 13.4918 -1.1038 -3.8279 22 1 12.8036 -2.9366 -5.2589 23 1 12.1488 -0.6650 -5.7989 24 7 5.4733 0.2390 -2.5290 25 6 5.0567 0.4563 -3.9167 26 6 5.0706 1.9324 -4.2200 27 6 5.8514 2.4003 -5.1622 28 1 -1.0501 0.0002 0.0000 29 1 3.0097 -0.9123 0.4715 30 1 3.0089 0.8657 0.5550 31 1 3.0827 -2.0536 -1.8035 32 1 2.9336 -1.0519 -3.2674 33 1 1.5603 -1.1964 -2.1442 34 1 1.5553 1.3496 -2.1028 35 1 3.0082 2.2151 -1.5478 36 1 3.0090 1.3987 -3.1291 37 1 9.0792 1.2374 -1.3305 38 1 9.5637 1.5694 -3.0107 39 1 8.1001 2.3285 -2.3400 40 1 8.4424 -3.0256 -3.2970 41 1 6.9545 -2.2246 -2.7372 42 1 7.5955 -1.8776 -4.3610 43 1 11.2381 -3.7037 -3.1453 44 1 5.7445 -0.0589 -4.5874 45 1 4.0492 0.0655 -4.0591 46 1 4.4368 2.6046 -3.6607 47 1 5.8610 3.4580 -5.3799 48 1 6.4854 1.7281 -5.7213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338690213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = 162.862005 kcal Electronic energy + Delta-G solvation = -27799.986332 eV Core-core repulsion = 24280.140251 eV Total energy + Delta-G solvation = -3519.846080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.59534 -37.95706 -36.81665 -35.87217 -32.99274 -32.78795 -32.21874 -29.48572 -28.76846 -27.76607 -27.51983 -26.69492 -25.50007 -24.32961 -22.59305 -21.66924 -20.54369 -19.43109 -19.32244 -17.79995 -16.83613 -16.33827 -15.99730 -15.45646 -15.28096 -14.90367 -14.69378 -14.52280 -14.04003 -13.78088 -13.44981 -13.31153 -13.15197 -12.71123 -12.40113 -12.31755 -12.03611 -11.97905 -11.80064 -11.51953 -11.38742 -11.27661 -11.14540 -11.00971 -10.92355 -10.82065 -10.39328 -10.28718 -10.27442 -10.16250 -10.11413 -9.91770 -9.72505 -9.53921 -9.08844 -8.54455 -8.38749 -7.69439 -6.09028 -4.15588 1.96877 2.24700 2.64321 2.76339 2.97284 3.26389 3.33159 3.34726 3.37271 4.11001 4.32250 4.38793 4.66270 4.70392 4.74695 4.76111 4.86166 5.00565 5.08515 5.23475 5.42400 5.50555 5.58373 5.58741 5.71816 5.74218 5.78829 5.80334 5.87681 5.90894 5.93048 6.08423 6.10642 6.22199 6.37174 6.44203 6.50895 6.62824 6.67962 6.72087 6.88096 6.93736 7.15933 7.38337 7.51410 7.65099 7.74250 7.90953 8.17046 8.46257 8.88300 9.28065 9.49406 10.97948 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003725 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.214533 B = 7514.163522 C = 8071.083396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.167 4.167 3 C 0.005 3.995 4 C 0.040 3.960 5 C -0.147 4.147 6 C -0.153 4.153 7 C 0.165 3.835 8 N -0.289 5.289 9 N -0.322 5.322 10 C 0.388 3.612 11 N -0.471 5.471 12 C 0.054 3.946 13 C 0.225 3.775 14 H 0.020 0.980 15 C -0.130 4.130 16 C -0.510 4.510 17 H 0.066 0.934 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 N -0.459 5.459 25 C 0.139 3.861 26 C -0.189 4.189 27 C -0.144 4.144 28 H 0.215 0.785 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.001 0.999 42 H 0.031 0.969 43 H 0.263 0.737 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.100 0.900 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.578 8.188 -1.966 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.167 4.167 3 C -0.032 4.032 4 C 0.037 3.963 5 C -0.205 4.205 6 C -0.211 4.211 7 C -0.103 4.103 8 N -0.129 5.129 9 N -0.165 5.165 10 C 0.032 3.968 11 N -0.198 5.198 12 C -0.094 4.094 13 C 0.121 3.879 14 H 0.038 0.962 15 C -0.188 4.188 16 C -0.549 4.549 17 H 0.084 0.916 18 C -0.140 4.140 19 N -0.526 5.526 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 N -0.152 5.152 25 C 0.016 3.984 26 C -0.208 4.208 27 C -0.182 4.182 28 H 0.232 0.768 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.020 0.980 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.118 0.882 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.139 7.826 -1.007 18.868 hybrid contribution 0.554 0.077 -1.151 1.279 sum -16.585 7.904 -2.157 18.498 Atomic orbital electron populations 1.24798 0.95797 1.02303 1.01096 1.22992 0.94248 0.99492 0.99929 1.18614 0.84136 1.05104 0.95358 1.18728 0.84144 0.97165 0.96227 1.22031 1.01684 0.97027 0.99723 1.22186 1.01735 0.96095 1.01080 1.24211 0.94955 1.07236 0.83900 1.73905 0.96868 1.18052 1.24054 1.74695 1.11184 1.21000 1.09599 1.22795 0.86195 0.99332 0.88490 1.59229 1.02711 1.08933 1.48909 1.22146 0.97077 0.90188 0.99943 1.19415 0.90040 0.81544 0.96932 0.96246 1.21803 0.96812 1.02570 0.97615 1.21046 1.03149 0.99643 1.31063 0.91564 1.24914 0.98281 0.95061 0.95718 1.69899 1.36324 1.03463 1.42954 0.86468 0.83040 0.77461 0.80261 1.20610 1.21222 1.19816 1.46250 1.06337 1.53927 1.08638 1.20982 1.02050 0.95114 0.80251 1.23033 1.01883 0.95747 1.00107 1.24017 0.95790 1.01112 0.97245 0.76843 0.88248 0.88670 0.91645 0.92257 0.91105 0.91233 0.92022 0.91484 0.94687 0.89434 0.93913 0.88992 0.97996 0.95011 0.92740 0.87736 0.88593 0.87075 0.88160 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.02 19.25 29.55 0.57 -1.45 16 2 C -0.17 -1.77 10.72 -37.12 -0.40 -2.17 16 3 C 0.00 0.06 4.31 -29.52 -0.13 -0.07 16 4 C 0.04 0.48 0.52 -155.66 -0.08 0.40 16 5 C -0.15 -1.59 8.19 37.16 0.30 -1.29 16 6 C -0.15 -1.53 7.74 37.15 0.29 -1.24 16 7 C 0.16 2.67 6.35 -154.02 -0.98 1.69 16 8 N -0.29 -5.72 11.51 32.99 0.38 -5.34 16 9 N -0.32 -7.25 12.18 30.31 0.37 -6.88 16 10 C 0.39 8.00 5.02 -318.87 -1.60 6.40 16 11 N -0.47 -10.12 4.66 -176.08 -0.82 -10.94 16 12 C 0.05 1.08 9.11 60.06 0.55 1.62 16 13 C 0.23 5.68 2.01 -68.86 -0.14 5.54 16 14 H 0.02 0.58 8.13 -51.93 -0.42 0.15 16 15 C -0.13 -3.20 8.84 37.16 0.33 -2.87 16 16 C -0.51 -13.41 7.95 -34.44 -0.27 -13.68 16 17 H 0.07 1.69 6.40 -52.48 -0.34 1.35 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 20 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 24 N -0.46 -7.69 2.79 -115.36 -0.32 -8.01 16 25 C 0.14 1.83 5.69 -5.19 -0.03 1.80 16 26 C -0.19 -2.18 8.95 -36.03 -0.32 -2.51 16 27 C -0.14 -1.58 14.32 29.01 0.42 -1.16 16 28 H 0.21 1.20 7.80 -54.09 -0.42 0.78 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.60 5.88 -51.92 -0.31 0.29 16 33 H 0.07 0.67 7.05 -51.93 -0.37 0.30 16 34 H 0.07 0.61 7.23 -51.93 -0.38 0.24 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 3.93 -51.93 -0.20 0.42 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.72 6.33 -51.93 -0.33 1.39 16 39 H 0.04 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 41 H 0.00 0.03 7.22 -51.93 -0.38 -0.35 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.10 1.52 7.78 -51.93 -0.40 1.11 16 45 H 0.10 1.03 4.51 -51.93 -0.23 0.79 16 46 H 0.11 1.19 6.88 -52.49 -0.36 0.83 16 47 H 0.10 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.11 1.26 7.83 -52.49 -0.41 0.85 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -30.85 383.94 -7.96 -38.81 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.37 Total: 2.71 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.59 Total: -7.39 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.23 Total: -55.55 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.85 -7.96 -38.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338690213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.675 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds