Wall clock time and date at job start Tue Mar 31 2020 11:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46988 * 92.69186 * 3 2 1 5 5 C 1.53001 * 109.46941 * 299.99514 * 4 3 2 6 6 C 1.52994 * 109.47531 * 59.99686 * 4 3 2 7 7 C 1.50706 * 109.47017 * 180.02562 * 4 3 2 8 8 N 1.30292 * 126.34621 * 6.47446 * 7 4 3 9 9 N 1.28532 * 110.05333 * 179.97438 * 8 7 4 10 10 C 1.31219 * 109.85763 * 0.02562 * 9 8 7 11 11 N 1.38582 * 126.47163 * 180.02562 * 10 9 8 12 12 C 1.46901 * 110.99599 * 298.81215 * 11 10 9 13 13 C 1.46901 * 110.99931 * 62.76304 * 11 10 9 14 14 H 1.08999 * 109.47543 * 299.99692 * 13 11 10 15 15 C 1.52997 * 109.47149 * 60.00341 * 13 11 10 16 16 C 1.50702 * 109.46833 * 180.02562 * 13 11 10 17 17 H 1.08005 * 120.00319 * 359.97438 * 16 13 11 18 18 C 1.37877 * 120.00230 * 180.02562 * 16 13 11 19 19 N 1.31515 * 119.99735 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00099 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47449 * 90.00117 * 20 18 16 22 22 H 1.48511 * 109.46932 * 209.99704 * 20 18 16 23 23 H 1.48503 * 109.47367 * 329.99193 * 20 18 16 24 24 N 1.36451 * 107.05314 * 359.75166 * 10 9 8 25 25 C 1.46507 * 127.13598 * 180.24644 * 24 10 9 26 26 C 1.50703 * 109.46661 * 276.74270 * 25 24 10 27 27 C 1.31007 * 119.99846 * 119.18024 * 26 25 24 28 28 H 4.44651 * 5.63403 * 180.02562 * 4 1 2 29 29 H 1.09004 * 109.47276 * 332.69067 * 3 2 1 30 30 H 1.08994 * 109.47006 * 212.68858 * 3 2 1 31 31 H 1.08998 * 109.47359 * 294.92175 * 5 4 3 32 32 H 1.09008 * 109.46706 * 174.92280 * 5 4 3 33 33 H 1.09003 * 109.46888 * 54.92957 * 5 4 3 34 34 H 1.09001 * 109.47402 * 300.00183 * 6 4 3 35 35 H 1.09004 * 109.47056 * 59.99947 * 6 4 3 36 36 H 1.08995 * 109.47393 * 179.97438 * 6 4 3 37 37 H 1.09003 * 109.47460 * 66.44546 * 12 11 10 38 38 H 1.08996 * 109.47156 * 186.44669 * 12 11 10 39 39 H 1.09003 * 109.47091 * 306.44501 * 12 11 10 40 40 H 1.09000 * 109.46672 * 179.97438 * 15 13 11 41 41 H 1.08991 * 109.47260 * 299.99574 * 15 13 11 42 42 H 1.09000 * 109.47103 * 59.99985 * 15 13 11 43 43 H 0.97002 * 119.99836 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46815 * 36.73888 * 25 24 10 45 45 H 1.09000 * 109.47031 * 156.74004 * 25 24 10 46 46 H 1.07993 * 119.99974 * 299.17610 * 26 25 24 47 47 H 1.07995 * 120.00008 * 179.97438 * 27 26 25 48 48 H 1.08000 * 119.99931 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.0686 -1.4409 5 6 2.6465 -1.1457 -2.2200 6 6 2.6453 1.3500 -2.1028 7 6 4.6630 0.0687 -1.4410 8 7 5.4352 -0.0986 -0.4050 9 7 6.6689 -0.0416 -0.7611 10 6 6.7504 0.1674 -2.0539 11 7 7.9139 0.2865 -2.7974 12 6 8.7160 1.4291 -2.3402 13 6 8.6957 -0.9564 -2.7543 14 1 8.9624 -1.1824 -1.7219 15 6 7.8620 -2.1035 -3.3286 16 6 9.9508 -0.7889 -3.5715 17 1 10.1478 0.1472 -4.0731 18 6 10.8473 -1.8308 -3.6797 19 7 10.6073 -2.9708 -3.0694 20 14 12.4025 -1.6233 -4.6933 21 1 13.4918 -1.1038 -3.8279 22 1 12.8036 -2.9366 -5.2589 23 1 12.1488 -0.6650 -5.7989 24 7 5.4733 0.2390 -2.5290 25 6 5.0567 0.4563 -3.9167 26 6 5.0706 1.9324 -4.2200 27 6 5.8514 2.4003 -5.1622 28 1 -1.0501 0.0002 0.0000 29 1 3.0097 -0.9123 0.4715 30 1 3.0089 0.8657 0.5550 31 1 3.0827 -2.0536 -1.8035 32 1 2.9336 -1.0519 -3.2674 33 1 1.5603 -1.1964 -2.1442 34 1 1.5553 1.3496 -2.1028 35 1 3.0082 2.2151 -1.5478 36 1 3.0090 1.3987 -3.1291 37 1 9.0792 1.2374 -1.3305 38 1 9.5637 1.5694 -3.0107 39 1 8.1001 2.3285 -2.3400 40 1 8.4424 -3.0256 -3.2970 41 1 6.9545 -2.2246 -2.7372 42 1 7.5955 -1.8776 -4.3610 43 1 11.2381 -3.7037 -3.1453 44 1 5.7445 -0.0589 -4.5874 45 1 4.0492 0.0655 -4.0591 46 1 4.4368 2.6046 -3.6607 47 1 5.8610 3.4580 -5.3799 48 1 6.4854 1.7281 -5.7213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338690213.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:38 Heat of formation + Delta-G solvation = 146.819767 kcal Electronic energy + Delta-G solvation = -27800.681975 eV Core-core repulsion = 24280.140251 eV Total energy + Delta-G solvation = -3520.541724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.04595 -39.19174 -38.36000 -37.00118 -34.88769 -33.79010 -33.28485 -31.42531 -30.27013 -28.71999 -28.36358 -27.84849 -27.38002 -26.09140 -23.84111 -23.44138 -21.63134 -20.97827 -20.39864 -18.58861 -18.51073 -17.98875 -17.48515 -16.88238 -16.49643 -16.32780 -15.99748 -15.64547 -15.37212 -15.09788 -14.95956 -14.53708 -14.21350 -14.14236 -13.76921 -13.54266 -13.33467 -13.07037 -13.03563 -12.87396 -12.80606 -12.73230 -12.52150 -12.46650 -12.25484 -12.21756 -12.17643 -12.07001 -12.04319 -11.55225 -11.13140 -11.03384 -10.94501 -10.91725 -10.58841 -10.48516 -9.92967 -9.52017 -8.14751 -6.28916 0.78128 0.97697 1.45653 1.45849 1.56654 1.66630 1.84380 1.98508 2.01444 2.42057 2.99364 3.14188 3.20046 3.48555 3.68415 3.82286 3.83911 3.89504 4.04632 4.14777 4.19158 4.39528 4.57397 4.60630 4.62895 4.64898 4.70479 4.75111 4.77699 4.82820 4.86600 4.89140 4.93865 4.96309 5.02241 5.02848 5.11229 5.19803 5.24414 5.26136 5.36648 5.56853 5.62616 5.64618 5.76011 5.90473 5.98127 6.14481 6.64348 6.78085 6.82042 7.40498 7.78388 8.92537 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003725 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.214533 B = 7514.163522 C = 8071.083396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.207 4.207 3 C 0.010 3.990 4 C 0.041 3.959 5 C -0.143 4.143 6 C -0.146 4.146 7 C 0.189 3.811 8 N -0.324 5.324 9 N -0.365 5.365 10 C 0.368 3.632 11 N -0.459 5.459 12 C 0.059 3.941 13 C 0.236 3.764 14 H -0.033 1.033 15 C -0.110 4.110 16 C -0.520 4.520 17 H 0.075 0.925 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.259 1.259 24 N -0.452 5.452 25 C 0.131 3.869 26 C -0.196 4.196 27 C -0.136 4.136 28 H 0.248 0.752 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.013 0.987 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.066 0.934 41 H -0.002 1.002 42 H 0.042 0.958 43 H 0.263 0.737 44 H 0.091 0.909 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 9.854 -4.004 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.207 4.207 3 C -0.027 4.027 4 C 0.038 3.962 5 C -0.201 4.201 6 C -0.204 4.204 7 C -0.080 4.080 8 N -0.164 5.164 9 N -0.208 5.208 10 C 0.010 3.990 11 N -0.186 5.186 12 C -0.089 4.089 13 C 0.130 3.870 14 H -0.015 1.015 15 C -0.168 4.168 16 C -0.558 4.558 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.793 3.207 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.183 1.183 24 N -0.143 5.143 25 C 0.011 3.989 26 C -0.215 4.215 27 C -0.174 4.174 28 H 0.265 0.735 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.141 0.859 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.473 9.517 -3.058 21.889 hybrid contribution 1.121 -0.437 -0.457 1.288 sum -18.352 9.080 -3.516 20.775 Atomic orbital electron populations 1.25596 0.96440 0.99915 0.98726 1.22826 0.94144 1.01637 1.02104 1.18399 0.85568 1.03841 0.94887 1.19000 0.80956 0.99136 0.97123 1.22019 1.02868 0.95398 0.99806 1.22154 1.02903 0.94267 1.01074 1.25107 0.96576 1.03505 0.82811 1.73831 0.96428 1.20351 1.25768 1.74576 1.12952 1.22152 1.11107 1.22679 0.86996 1.00977 0.88352 1.59159 1.02725 1.07637 1.49035 1.22141 0.97526 0.90593 0.98621 1.19080 0.90739 0.83445 0.93765 1.01521 1.21546 0.95993 1.01261 0.98041 1.21324 1.03592 0.99975 1.30899 0.90702 1.25779 1.01468 0.94656 0.96737 1.70055 1.37481 1.04303 1.44322 0.85397 0.78862 0.77531 0.78894 1.20394 1.21178 1.18332 1.46416 1.04883 1.52946 1.10086 1.21306 1.03057 0.96755 0.77829 1.23005 1.02969 0.94614 1.00896 1.24173 0.94591 1.02161 0.96481 0.73523 0.90091 0.89651 0.93520 0.91200 0.88959 0.89248 0.92527 0.90524 0.96870 0.89130 0.91431 0.91551 0.98319 0.93864 0.92803 0.89109 0.85781 0.85693 0.85932 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.76 19.25 74.32 1.43 -1.33 16 2 C -0.21 -3.99 10.72 31.13 0.33 -3.65 16 3 C 0.01 0.24 4.31 28.79 0.12 0.36 16 4 C 0.04 0.92 0.52 -52.93 -0.03 0.89 16 5 C -0.14 -2.84 8.19 71.98 0.59 -2.25 16 6 C -0.15 -2.51 7.74 71.98 0.56 -1.95 16 7 C 0.19 6.14 6.35 137.64 0.87 7.01 16 8 N -0.32 -13.39 11.51 -49.54 -0.57 -13.96 16 9 N -0.36 -17.23 12.18 -58.00 -0.71 -17.93 16 10 C 0.37 15.55 5.02 260.11 1.30 16.85 16 11 N -0.46 -20.15 4.66 -711.00 -3.31 -23.46 16 12 C 0.06 2.37 9.11 127.69 1.16 3.53 16 13 C 0.24 12.34 2.01 44.17 0.09 12.43 16 14 H -0.03 -2.04 8.13 -2.39 -0.02 -2.06 16 15 C -0.11 -5.61 8.84 71.98 0.64 -4.98 16 16 C -0.52 -27.68 7.95 25.60 0.20 -27.47 16 17 H 0.07 3.79 6.40 -2.91 -0.02 3.77 16 18 C 0.01 0.69 5.30 84.65 0.45 1.14 16 19 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 20 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 N -0.45 -15.01 2.79 -518.89 -1.45 -16.46 16 25 C 0.13 3.26 5.69 85.63 0.49 3.74 16 26 C -0.20 -4.05 8.95 25.64 0.23 -3.82 16 27 C -0.14 -2.64 14.32 67.77 0.97 -1.67 16 28 H 0.25 1.57 7.80 -4.41 -0.03 1.54 16 29 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.22 5.88 -2.38 -0.01 1.21 16 33 H 0.09 1.47 7.05 -2.39 -0.02 1.45 16 34 H 0.09 1.23 7.23 -2.39 -0.02 1.21 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.17 3.93 -2.39 -0.01 1.16 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 3.55 6.33 -2.39 -0.02 3.53 16 39 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 40 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 41 H 0.00 -0.11 7.22 -2.39 -0.02 -0.13 16 42 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.09 2.54 7.78 -2.39 -0.02 2.52 16 45 H 0.12 2.32 4.51 -2.39 -0.01 2.31 16 46 H 0.13 2.27 6.88 -2.91 -0.02 2.25 16 47 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.10 2.11 7.83 -2.91 -0.02 2.09 16 Total: -1.00 -70.16 383.94 6.59 -63.57 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.94 Total: 18.21 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 9.42 Total: -1.17 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -5.79 Total: -125.03 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -70.16 6.59 -63.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338690213.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.388 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds