Wall clock time and date at job start Tue Mar 31 2020 11:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00050 * 2 1 4 4 N 1.46494 * 109.47249 * 125.00227 * 3 2 1 5 5 C 1.36742 * 127.13978 * 90.02259 * 4 3 2 6 6 C 1.50697 * 126.34592 * 0.02562 * 5 4 3 7 7 C 1.53007 * 109.47291 * 269.71412 * 6 5 4 8 8 C 1.50694 * 109.46928 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00425 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99968 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99713 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00333 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47136 * 180.02562 * 12 10 8 14 14 H 1.48493 * 109.46729 * 60.00337 * 12 10 8 15 15 H 1.48496 * 109.47125 * 300.00281 * 12 10 8 16 16 N 1.30296 * 107.30410 * 179.75795 * 5 4 3 17 17 N 1.28528 * 110.05795 * 0.24057 * 16 5 4 18 18 C 1.31222 * 109.85445 * 0.02562 * 17 16 5 19 19 N 1.38583 * 126.46661 * 180.02562 * 18 17 16 20 20 C 1.48559 * 111.00220 * 0.02562 * 19 18 17 21 21 C 1.54385 * 104.59096 * 159.04073 * 20 19 18 22 22 H 1.09002 * 117.60200 * 115.28726 * 21 20 19 23 23 C 1.54254 * 105.06140 * 336.15171 * 21 20 19 24 24 H 1.09007 * 121.78404 * 137.87475 * 23 21 20 25 25 C 1.48558 * 111.00035 * 115.44040 * 19 18 17 26 26 C 1.52996 * 118.13239 * 272.76980 * 21 20 19 27 27 C 1.52997 * 117.44887 * 199.31735 * 26 21 20 28 28 C 1.53008 * 117.44278 * 344.02872 * 26 21 20 29 29 H 1.07993 * 120.00288 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99636 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99958 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47059 * 4.99533 * 3 2 1 33 33 H 1.09002 * 109.46768 * 244.99895 * 3 2 1 34 34 H 1.08997 * 109.47046 * 149.71507 * 6 5 4 35 35 H 1.09001 * 109.47020 * 29.71454 * 6 5 4 36 36 H 1.08997 * 109.46999 * 60.00066 * 7 6 5 37 37 H 1.08998 * 109.46632 * 299.99966 * 7 6 5 38 38 H 0.97002 * 119.99914 * 0.02562 * 11 10 8 39 39 H 1.08996 * 110.41130 * 277.81929 * 20 19 18 40 40 H 1.08997 * 110.40897 * 40.15183 * 20 19 18 41 41 H 1.09001 * 110.41221 * 319.73434 * 25 19 18 42 42 H 1.09006 * 110.41114 * 82.17715 * 25 19 18 43 43 H 1.09001 * 109.46678 * 59.99811 * 27 26 21 44 44 H 1.09000 * 109.47496 * 180.02562 * 27 26 21 45 45 H 1.08994 * 109.47031 * 300.00438 * 27 26 21 46 46 H 1.09000 * 109.46932 * 53.27474 * 28 26 21 47 47 H 1.08999 * 109.47197 * 173.28052 * 28 26 21 48 48 H 1.09001 * 109.46852 * 293.28089 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.2914 0.9010 1.1435 6 6 5.0447 0.3024 -0.0163 7 6 4.8647 -1.2170 -0.0118 8 6 5.6174 -1.8154 -1.1720 9 1 6.1687 -1.1761 -1.8456 10 6 5.6024 -3.1793 -1.3738 11 7 4.9306 -3.9579 -0.5539 12 14 6.5348 -3.9212 -2.8124 13 1 6.3602 -5.3959 -2.8079 14 1 7.9777 -3.5927 -2.6891 15 1 6.0073 -3.3646 -4.0840 16 7 4.7577 1.1091 2.3423 17 7 3.8484 1.6335 3.0840 18 6 2.7440 1.7888 2.3926 19 7 1.5513 2.3226 2.8543 20 6 1.6626 2.7190 4.2817 21 6 0.5265 3.7431 4.4907 22 1 -0.2769 3.4733 5.1763 23 6 0.2392 4.3151 3.0873 24 1 -0.7778 4.4843 2.7333 25 6 1.2261 3.5887 2.1484 26 6 0.8154 5.2138 4.1834 27 6 -0.1159 6.2593 4.8001 28 6 2.2814 5.6323 4.0538 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 6.1038 0.5430 0.0753 35 1 4.6586 0.7112 -0.9501 36 1 3.8056 -1.4577 -0.1034 37 1 5.2508 -1.6258 0.9220 38 1 4.4455 -3.5726 0.1925 39 1 1.5184 1.8538 4.9288 40 1 2.6318 3.1792 4.4740 41 1 2.1262 4.1869 2.0065 42 1 0.7531 3.3784 1.1891 43 1 -0.0826 6.1796 5.8867 44 1 0.2062 7.2560 4.4984 45 1 -1.1351 6.0870 4.4543 46 1 2.7800 4.9896 3.3283 47 1 2.3353 6.6682 3.7191 48 1 2.7732 5.5372 5.0219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338794776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:32 Heat of formation + Delta-G solvation = 132.473956 kcal Electronic energy + Delta-G solvation = -27037.887180 eV Core-core repulsion = 23516.723375 eV Total energy + Delta-G solvation = -3521.163805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.76065 -40.70203 -36.19497 -35.78827 -34.24635 -32.62861 -31.72687 -30.07371 -28.94609 -28.15738 -27.80270 -26.75543 -24.84582 -23.78431 -22.15955 -21.06557 -20.79073 -20.17036 -19.49376 -18.78739 -17.33387 -16.83785 -16.56069 -16.02862 -15.70157 -15.00183 -14.63382 -14.37403 -14.12140 -14.02406 -13.75161 -13.55574 -13.24869 -13.18921 -12.69496 -12.61477 -12.58065 -12.26239 -12.19319 -11.99059 -11.76155 -11.65022 -11.45523 -11.34654 -11.07510 -10.89960 -10.62336 -10.31447 -10.21928 -10.09188 -9.98642 -9.93164 -9.89842 -9.53097 -9.40609 -8.67066 -8.36832 -8.03242 -6.40293 -4.11001 1.90513 2.08872 2.67167 3.08819 3.22181 3.41989 3.44549 3.62933 3.70381 4.03105 4.21349 4.41247 4.50956 4.54408 4.66361 4.67636 4.77426 4.84962 4.95858 5.04797 5.06645 5.18723 5.25388 5.27312 5.33027 5.36576 5.41014 5.50452 5.51679 5.56085 5.64916 5.67956 5.71172 5.80198 5.86527 5.87788 6.02700 6.07713 6.22598 6.31547 6.41591 6.52379 6.57413 6.65877 6.83114 7.29359 7.33991 7.42765 8.10234 8.40125 8.81594 9.11864 9.61685 11.00025 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002985 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.350086 B = 9379.500616 C = 9878.239485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.171 4.171 3 C 0.140 3.860 4 N -0.473 5.473 5 C 0.210 3.790 6 C -0.023 4.023 7 C 0.019 3.981 8 C -0.604 4.604 9 H 0.052 0.948 10 C 0.017 3.983 11 N -0.909 5.909 12 Si 1.069 2.931 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.288 1.288 16 N -0.294 5.294 17 N -0.321 5.321 18 C 0.329 3.671 19 N -0.423 5.423 20 C 0.078 3.922 21 C -0.154 4.154 22 H 0.123 0.877 23 C -0.157 4.157 24 H 0.122 0.878 25 C 0.057 3.943 26 C -0.092 4.092 27 C -0.112 4.112 28 C -0.128 4.128 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.007 0.993 37 H 0.016 0.984 38 H 0.269 0.731 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 20.195 5.689 24.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.017 3.983 4 N -0.167 5.167 5 C -0.058 4.058 6 C -0.063 4.063 7 C -0.019 4.019 8 C -0.642 4.642 9 H 0.070 0.930 10 C -0.187 4.187 11 N -0.545 5.545 12 Si 0.897 3.103 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.214 1.214 16 N -0.132 5.132 17 N -0.165 5.165 18 C -0.028 4.028 19 N -0.147 5.147 20 C -0.049 4.049 21 C -0.173 4.173 22 H 0.140 0.860 23 C -0.176 4.176 24 H 0.140 0.860 25 C -0.070 4.070 26 C -0.092 4.092 27 C -0.169 4.169 28 C -0.185 4.185 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.034 0.966 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.639 18.384 6.014 23.106 hybrid contribution -0.955 1.680 -0.262 1.950 sum -13.594 20.065 5.752 24.909 Atomic orbital electron populations 1.23807 0.95369 1.02034 0.98942 1.23207 0.96379 0.98407 1.00978 1.20984 0.91666 0.97476 0.88127 1.46227 1.12236 1.48121 1.10152 1.25585 0.81885 0.99844 0.98446 1.20280 0.98272 0.98578 0.89153 1.19213 0.96721 0.87868 0.98068 1.21950 1.34672 0.94743 1.12883 0.92986 1.25856 0.97057 0.93987 1.01815 1.70782 1.29840 1.38443 1.15414 0.83539 0.75810 0.76257 0.74674 1.20764 1.21297 1.21432 1.74003 1.22675 1.16551 0.99983 1.74491 0.96229 1.19918 1.25828 1.22616 0.92732 1.03686 0.83773 1.62383 1.22607 1.24586 1.05166 1.22534 0.98029 0.98006 0.86326 1.23607 1.01057 0.93033 0.99604 0.85956 1.23572 1.00146 1.03537 0.90329 0.85996 1.22822 0.98495 0.88164 0.97489 1.21697 0.96675 0.91002 0.99855 1.21299 0.97861 0.97182 1.00607 1.21493 0.93117 1.01394 1.02476 0.87774 0.88605 0.85762 0.88913 0.87752 0.89195 0.91171 0.97458 0.96604 0.92077 0.88764 0.90575 0.92006 0.89276 0.91716 0.91771 0.92214 0.92125 0.91877 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 14.32 29.02 0.42 -1.55 16 2 C -0.17 -2.51 9.85 -36.02 -0.35 -2.86 16 3 C 0.14 1.90 6.39 -5.19 -0.03 1.87 16 4 N -0.47 -8.08 2.79 -115.36 -0.32 -8.40 16 5 C 0.21 4.23 7.32 -154.01 -1.13 3.10 16 6 C -0.02 -0.48 5.53 -27.88 -0.15 -0.63 16 7 C 0.02 0.49 4.27 -27.88 -0.12 0.37 16 8 C -0.60 -16.76 9.11 -34.44 -0.31 -17.07 16 9 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 10 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 11 N -0.91 -27.81 13.65 55.43 0.76 -27.06 16 12 Si 1.07 24.94 29.90 -169.99 -5.08 19.85 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 16 N -0.29 -6.45 12.18 32.99 0.40 -6.05 16 17 N -0.32 -6.43 10.98 30.32 0.33 -6.10 16 18 C 0.33 5.63 7.00 -318.87 -2.23 3.40 16 19 N -0.42 -5.74 5.42 -170.10 -0.92 -6.67 16 20 C 0.08 0.95 5.57 -2.18 -0.01 0.93 16 21 C -0.15 -1.40 6.81 -89.24 -0.61 -2.01 16 22 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 23 C -0.16 -1.34 6.71 -89.24 -0.60 -1.94 16 24 H 0.12 0.87 8.13 -51.93 -0.42 0.45 16 25 C 0.06 0.60 5.35 -2.19 -0.01 0.59 16 26 C -0.09 -0.73 2.67 -154.51 -0.41 -1.14 16 27 C -0.11 -0.67 9.84 37.16 0.37 -0.30 16 28 C -0.13 -1.11 8.53 37.16 0.32 -0.80 16 29 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.10 0.93 7.84 -52.48 -0.41 0.52 16 31 H 0.12 2.24 6.65 -52.49 -0.35 1.89 16 32 H 0.09 1.00 5.18 -51.93 -0.27 0.74 16 33 H 0.10 1.33 7.25 -51.93 -0.38 0.96 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.07 1.30 7.26 -51.93 -0.38 0.93 16 36 H 0.01 0.19 6.60 -51.93 -0.34 -0.15 16 37 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 38 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.02 6.04 -51.93 -0.31 0.71 16 41 H 0.06 0.71 5.78 -51.93 -0.30 0.41 16 42 H 0.09 0.84 6.11 -51.93 -0.32 0.52 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.34 8.01 -51.93 -0.42 -0.07 16 45 H 0.06 0.32 7.96 -51.93 -0.41 -0.10 16 46 H 0.06 0.65 4.92 -51.93 -0.26 0.39 16 47 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -33.13 378.47 -11.54 -44.67 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.43 Total: 1.68 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -4.98 Total: -17.63 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.25 Total: -54.28 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.13 -11.54 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338794776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.143 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds