Wall clock time and date at job start Tue Mar 31 2020 11:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00050 * 2 1 4 4 N 1.46494 * 109.47249 * 125.00227 * 3 2 1 5 5 C 1.36742 * 127.13978 * 90.02259 * 4 3 2 6 6 C 1.50697 * 126.34592 * 0.02562 * 5 4 3 7 7 C 1.53007 * 109.47291 * 269.71412 * 6 5 4 8 8 C 1.50694 * 109.46928 * 179.97438 * 7 6 5 9 9 H 1.07996 * 120.00425 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99968 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99713 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00333 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47136 * 180.02562 * 12 10 8 14 14 H 1.48493 * 109.46729 * 60.00337 * 12 10 8 15 15 H 1.48496 * 109.47125 * 300.00281 * 12 10 8 16 16 N 1.30296 * 107.30410 * 179.75795 * 5 4 3 17 17 N 1.28528 * 110.05795 * 0.24057 * 16 5 4 18 18 C 1.31222 * 109.85445 * 0.02562 * 17 16 5 19 19 N 1.38583 * 126.46661 * 180.02562 * 18 17 16 20 20 C 1.48559 * 111.00220 * 0.02562 * 19 18 17 21 21 C 1.54385 * 104.59096 * 159.04073 * 20 19 18 22 22 H 1.09002 * 117.60200 * 115.28726 * 21 20 19 23 23 C 1.54254 * 105.06140 * 336.15171 * 21 20 19 24 24 H 1.09007 * 121.78404 * 137.87475 * 23 21 20 25 25 C 1.48558 * 111.00035 * 115.44040 * 19 18 17 26 26 C 1.52996 * 118.13239 * 272.76980 * 21 20 19 27 27 C 1.52997 * 117.44887 * 199.31735 * 26 21 20 28 28 C 1.53008 * 117.44278 * 344.02872 * 26 21 20 29 29 H 1.07993 * 120.00288 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99636 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99958 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47059 * 4.99533 * 3 2 1 33 33 H 1.09002 * 109.46768 * 244.99895 * 3 2 1 34 34 H 1.08997 * 109.47046 * 149.71507 * 6 5 4 35 35 H 1.09001 * 109.47020 * 29.71454 * 6 5 4 36 36 H 1.08997 * 109.46999 * 60.00066 * 7 6 5 37 37 H 1.08998 * 109.46632 * 299.99966 * 7 6 5 38 38 H 0.97002 * 119.99914 * 0.02562 * 11 10 8 39 39 H 1.08996 * 110.41130 * 277.81929 * 20 19 18 40 40 H 1.08997 * 110.40897 * 40.15183 * 20 19 18 41 41 H 1.09001 * 110.41221 * 319.73434 * 25 19 18 42 42 H 1.09006 * 110.41114 * 82.17715 * 25 19 18 43 43 H 1.09001 * 109.46678 * 59.99811 * 27 26 21 44 44 H 1.09000 * 109.47496 * 180.02562 * 27 26 21 45 45 H 1.08994 * 109.47031 * 300.00438 * 27 26 21 46 46 H 1.09000 * 109.46932 * 53.27474 * 28 26 21 47 47 H 1.08999 * 109.47197 * 173.28052 * 28 26 21 48 48 H 1.09001 * 109.46852 * 293.28089 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.2914 0.9010 1.1435 6 6 5.0447 0.3024 -0.0163 7 6 4.8647 -1.2170 -0.0118 8 6 5.6174 -1.8154 -1.1720 9 1 6.1687 -1.1761 -1.8456 10 6 5.6024 -3.1793 -1.3738 11 7 4.9306 -3.9579 -0.5539 12 14 6.5348 -3.9212 -2.8124 13 1 6.3602 -5.3959 -2.8079 14 1 7.9777 -3.5927 -2.6891 15 1 6.0073 -3.3646 -4.0840 16 7 4.7577 1.1091 2.3423 17 7 3.8484 1.6335 3.0840 18 6 2.7440 1.7888 2.3926 19 7 1.5513 2.3226 2.8543 20 6 1.6626 2.7190 4.2817 21 6 0.5265 3.7431 4.4907 22 1 -0.2769 3.4733 5.1763 23 6 0.2392 4.3151 3.0873 24 1 -0.7778 4.4843 2.7333 25 6 1.2261 3.5887 2.1484 26 6 0.8154 5.2138 4.1834 27 6 -0.1159 6.2593 4.8001 28 6 2.2814 5.6323 4.0538 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 6.1038 0.5430 0.0753 35 1 4.6586 0.7112 -0.9501 36 1 3.8056 -1.4577 -0.1034 37 1 5.2508 -1.6258 0.9220 38 1 4.4455 -3.5726 0.1925 39 1 1.5184 1.8538 4.9288 40 1 2.6318 3.1792 4.4740 41 1 2.1262 4.1869 2.0065 42 1 0.7531 3.3784 1.1891 43 1 -0.0826 6.1796 5.8867 44 1 0.2062 7.2560 4.4984 45 1 -1.1351 6.0870 4.4543 46 1 2.7800 4.9896 3.3283 47 1 2.3353 6.6682 3.7191 48 1 2.7732 5.5372 5.0219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338794776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:31 Heat of formation + Delta-G solvation = 115.409999 kcal Electronic energy + Delta-G solvation = -27038.627129 eV Core-core repulsion = 23516.723375 eV Total energy + Delta-G solvation = -3521.903754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.17792 -41.55492 -37.43376 -36.93968 -36.07174 -34.02472 -33.40055 -31.14434 -29.85224 -29.37558 -28.60633 -27.88903 -26.77774 -24.77990 -24.10386 -22.32712 -22.04100 -21.12666 -20.75617 -19.50319 -19.01547 -18.43893 -17.61678 -17.37300 -16.72788 -16.25223 -15.84739 -15.63904 -15.41702 -15.13982 -14.96543 -14.88368 -14.72829 -14.25447 -14.05466 -13.61301 -13.58954 -13.39362 -13.17912 -13.02033 -12.84999 -12.73475 -12.66678 -12.54968 -12.38339 -12.31083 -12.13283 -12.00873 -11.91098 -11.64603 -11.25837 -11.07840 -10.83503 -10.64105 -10.60183 -10.56144 -10.53383 -9.42247 -8.71296 -6.42996 0.58271 0.86579 1.46982 1.53958 1.62786 1.66525 1.81355 2.43247 2.56139 2.60360 3.14676 3.24950 3.35437 3.43574 3.50245 3.69123 3.71276 3.83429 3.92351 4.00945 4.07038 4.09120 4.17289 4.29078 4.30847 4.44746 4.48853 4.55649 4.62348 4.68672 4.72663 4.75466 4.83742 4.85588 4.90500 5.01985 5.05065 5.07655 5.12267 5.19028 5.24872 5.26593 5.33824 5.38291 5.43582 5.50733 5.61526 5.90124 6.05343 6.14707 6.49954 7.40469 7.62249 8.68582 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.002985 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.350086 B = 9379.500616 C = 9878.239485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.207 4.207 3 C 0.138 3.862 4 N -0.469 5.469 5 C 0.194 3.806 6 C -0.007 4.007 7 C 0.029 3.971 8 C -0.614 4.614 9 H 0.064 0.936 10 C -0.039 4.039 11 N -0.937 5.937 12 Si 1.120 2.880 13 H -0.288 1.288 14 H -0.269 1.269 15 H -0.261 1.261 16 N -0.330 5.330 17 N -0.356 5.356 18 C 0.347 3.653 19 N -0.423 5.423 20 C 0.073 3.927 21 C -0.157 4.157 22 H 0.140 0.860 23 C -0.147 4.147 24 H 0.149 0.851 25 C 0.053 3.947 26 C -0.083 4.083 27 C -0.109 4.109 28 C -0.129 4.129 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.095 0.905 36 H -0.006 1.006 37 H -0.026 1.026 38 H 0.251 0.749 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.020 22.762 4.293 28.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.226 4.226 3 C 0.018 3.982 4 N -0.163 5.163 5 C -0.075 4.075 6 C -0.047 4.047 7 C -0.009 4.009 8 C -0.651 4.651 9 H 0.082 0.918 10 C -0.236 4.236 11 N -0.575 5.575 12 Si 0.940 3.060 13 H -0.213 1.213 14 H -0.194 1.194 15 H -0.186 1.186 16 N -0.168 5.168 17 N -0.200 5.200 18 C -0.010 4.010 19 N -0.148 5.148 20 C -0.053 4.053 21 C -0.176 4.176 22 H 0.157 0.843 23 C -0.165 4.165 24 H 0.167 0.833 25 C -0.073 4.073 26 C -0.083 4.083 27 C -0.166 4.166 28 C -0.186 4.186 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.013 0.987 37 H -0.007 1.007 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.055 0.945 47 H 0.096 0.904 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.103 20.993 4.619 26.270 hybrid contribution -0.318 0.915 0.257 1.002 sum -15.420 21.907 4.876 27.230 Atomic orbital electron populations 1.24104 0.94222 1.03919 0.94465 1.22958 0.97369 0.97102 1.05210 1.21292 0.91698 0.98077 0.87165 1.46361 1.11633 1.47212 1.11048 1.25276 0.83425 1.00970 0.97823 1.19981 0.98627 0.95269 0.90821 1.19012 0.95319 0.91139 0.95446 1.22386 1.34269 0.95235 1.13245 0.91761 1.27521 0.97126 0.95204 1.03746 1.70928 1.31643 1.38835 1.16061 0.82918 0.75508 0.75193 0.72374 1.21324 1.19377 1.18609 1.73888 1.24423 1.17544 1.00969 1.74396 0.97288 1.21724 1.26612 1.23029 0.92936 1.01752 0.83293 1.62578 1.19849 1.26192 1.06187 1.22544 0.98764 0.98548 0.85475 1.23574 1.00221 0.93055 1.00762 0.84253 1.23682 1.00653 1.02998 0.89197 0.83340 1.22968 0.98938 0.86744 0.98639 1.21796 0.96488 0.90770 0.99293 1.21316 0.97870 0.96639 1.00752 1.21486 0.93725 1.01765 1.01577 0.87411 0.84989 0.90437 0.85333 0.87015 0.89419 0.88636 0.98744 1.00729 0.93991 0.89925 0.92327 0.92948 0.87318 0.91281 0.90970 0.90913 0.94470 0.90421 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 14.32 67.79 0.97 -1.82 16 2 C -0.21 -6.03 9.85 25.65 0.25 -5.77 16 3 C 0.14 3.59 6.39 85.64 0.55 4.13 16 4 N -0.47 -16.17 2.79 -518.90 -1.45 -17.62 16 5 C 0.19 8.14 7.32 137.64 1.01 9.15 16 6 C -0.01 -0.31 5.53 29.85 0.17 -0.15 16 7 C 0.03 1.55 4.27 29.85 0.13 1.68 16 8 C -0.61 -34.68 9.11 25.60 0.23 -34.45 16 9 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 10 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 11 N -0.94 -59.52 13.65 21.45 0.29 -59.23 16 12 Si 1.12 49.89 29.90 68.60 2.05 51.94 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 16 N -0.33 -15.28 12.18 -49.54 -0.60 -15.88 16 17 N -0.36 -14.98 10.98 -58.00 -0.64 -15.62 16 18 C 0.35 12.06 7.00 260.11 1.82 13.88 16 19 N -0.42 -11.08 5.42 -692.06 -3.75 -14.83 16 20 C 0.07 1.77 5.57 86.45 0.48 2.25 16 21 C -0.16 -2.50 6.81 -9.90 -0.07 -2.56 16 22 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 23 C -0.15 -1.98 6.71 -9.90 -0.07 -2.05 16 24 H 0.15 1.32 8.13 -2.38 -0.02 1.30 16 25 C 0.05 0.99 5.35 86.45 0.46 1.45 16 26 C -0.08 -1.09 2.67 -52.18 -0.14 -1.23 16 27 C -0.11 -0.89 9.84 71.98 0.71 -0.18 16 28 C -0.13 -2.08 8.53 71.98 0.61 -1.47 16 29 H 0.11 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.13 1.92 7.84 -2.91 -0.02 1.89 16 31 H 0.08 3.00 6.65 -2.91 -0.02 2.98 16 32 H 0.13 2.34 5.18 -2.39 -0.01 2.33 16 33 H 0.11 2.70 7.25 -2.39 -0.02 2.68 16 34 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 35 H 0.10 3.54 7.26 -2.39 -0.02 3.52 16 36 H -0.01 -0.31 6.60 -2.39 -0.02 -0.33 16 37 H -0.03 -1.57 8.01 -2.39 -0.02 -1.59 16 38 H 0.25 16.42 7.22 -92.71 -0.67 15.75 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.06 1.64 6.04 -2.39 -0.01 1.62 16 41 H 0.05 1.13 5.78 -2.39 -0.01 1.11 16 42 H 0.11 1.59 6.11 -2.38 -0.01 1.58 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.07 0.51 8.01 -2.39 -0.02 0.49 16 45 H 0.07 0.44 7.96 -2.39 -0.02 0.42 16 46 H 0.04 0.78 4.92 -2.39 -0.01 0.77 16 47 H 0.08 1.01 8.04 -2.39 -0.02 0.99 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.91 378.47 4.53 -72.38 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.05 Total: 17.79 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 7.58 Total: -18.92 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -6.15 Total: -123.18 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.94 kcal Total: -76.91 4.53 -72.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338794776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.788 kcal (2) G-P(sol) polarization free energy of solvation -76.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds