Wall clock time and date at job start Tue Mar 31 2020 11:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00172 * 2 1 4 4 N 1.46495 * 109.47053 * 125.00221 * 3 2 1 5 5 C 1.36742 * 127.13504 * 269.77881 * 4 3 2 6 6 C 1.50700 * 126.34933 * 359.96505 * 5 4 3 7 7 H 1.09001 * 115.54826 * 334.61786 * 6 5 4 8 8 C 1.52997 * 117.49763 * 188.91049 * 6 5 4 9 9 C 1.52997 * 60.00045 * 252.51007 * 8 6 5 10 10 H 1.08996 * 117.50354 * 252.51318 * 9 8 6 11 11 C 1.53005 * 117.51765 * 107.48011 * 9 8 6 12 12 N 1.30294 * 107.30291 * 180.22876 * 5 4 3 13 13 N 1.28529 * 110.05717 * 359.77668 * 12 5 4 14 14 C 1.31219 * 109.85616 * 359.97438 * 13 12 5 15 15 N 1.38587 * 126.47019 * 179.97438 * 14 13 12 16 16 C 1.46905 * 110.99648 * 254.05323 * 15 14 13 17 17 C 1.50694 * 109.47263 * 59.90901 * 16 15 14 18 18 H 1.07997 * 120.00119 * 4.14326 * 17 16 15 19 19 C 1.37878 * 119.99722 * 184.14355 * 17 16 15 20 20 N 1.31512 * 120.00095 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99818 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47051 * 90.00013 * 21 19 17 23 23 H 1.48504 * 109.47036 * 209.99805 * 21 19 17 24 24 H 1.48502 * 109.47101 * 329.99945 * 21 19 17 25 25 C 1.46893 * 111.00123 * 18.00256 * 15 14 13 26 26 C 1.52998 * 109.47322 * 166.08549 * 25 15 14 27 27 C 1.52994 * 117.49830 * 117.58181 * 26 25 15 28 28 C 1.53001 * 117.50006 * 186.24553 * 26 25 15 29 29 H 1.08003 * 119.99687 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99831 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00142 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47131 * 4.99938 * 3 2 1 33 33 H 1.08997 * 109.47450 * 245.00401 * 3 2 1 34 34 H 1.08997 * 117.50476 * 359.97438 * 8 6 5 35 35 H 1.09004 * 117.49893 * 145.02286 * 8 6 5 36 36 H 1.08993 * 109.47279 * 351.37820 * 11 9 8 37 37 H 1.09001 * 109.46797 * 111.37445 * 11 9 8 38 38 H 1.08999 * 109.47088 * 231.37415 * 11 9 8 39 39 H 1.08999 * 109.46746 * 179.91158 * 16 15 14 40 40 H 1.09004 * 109.46950 * 299.90883 * 16 15 14 41 41 H 0.97004 * 119.99753 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.46918 * 46.08829 * 25 15 14 43 43 H 1.08999 * 109.47645 * 286.08792 * 25 15 14 44 44 H 1.09004 * 115.54680 * 331.91615 * 26 25 15 45 45 H 1.09002 * 117.50058 * 215.00524 * 27 26 25 46 46 H 1.08996 * 117.50342 * 0.03008 * 27 26 25 47 47 H 1.08995 * 117.50186 * 359.97438 * 28 26 25 48 48 H 1.08998 * 117.49460 * 144.97871 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7460 1.7972 2.3930 6 6 1.4509 2.3869 2.8892 7 1 0.8154 2.8350 2.1255 8 6 1.4551 3.0352 4.2751 9 6 0.7604 1.6887 4.0625 10 1 -0.3294 1.6777 4.0708 11 6 1.4373 0.4448 4.6418 12 7 3.8389 1.6415 3.0851 13 7 4.7518 1.1091 2.3536 14 6 4.2862 0.8945 1.1457 15 7 4.9786 0.3353 0.0834 16 6 5.3396 1.3587 -0.9068 17 6 6.2103 2.4023 -0.2559 18 1 6.5248 2.2798 0.7700 19 6 6.6055 3.5134 -0.9702 20 7 6.2221 3.6628 -2.2193 21 14 7.6855 4.8068 -0.1637 22 1 9.1139 4.4652 -0.3824 23 1 7.3970 6.1353 -0.7613 24 1 7.4039 4.8479 1.2938 25 6 6.1689 -0.3865 0.5523 26 6 6.7081 -1.2683 -0.5759 27 6 8.1157 -0.9690 -1.0951 28 6 7.8629 -2.2148 -0.2423 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.3943 3.0348 4.8282 35 1 0.8221 3.9101 4.4233 36 1 2.4298 0.7081 5.0072 37 1 0.8385 0.0555 5.4652 38 1 1.5257 -0.3155 3.8657 39 1 5.8832 0.8931 -1.7288 40 1 4.4339 1.8288 -1.2901 41 1 6.5004 4.4444 -2.7219 42 1 5.9028 -1.0105 1.4055 43 1 6.9342 0.3299 0.8508 44 1 5.9678 -1.6124 -1.2982 45 1 8.3017 -1.1163 -2.1590 46 1 8.6580 -0.1443 -0.6327 47 1 8.2389 -2.2091 0.7807 48 1 7.8822 -3.1818 -0.7449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338801948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:48 Heat of formation + Delta-G solvation = 158.466465 kcal Electronic energy + Delta-G solvation = -27706.644731 eV Core-core repulsion = 24186.608046 eV Total energy + Delta-G solvation = -3520.036685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29023 -38.06424 -37.44094 -35.89893 -35.35838 -32.56229 -32.35377 -29.28964 -28.22452 -27.46557 -26.58157 -25.31369 -23.61341 -22.63340 -21.86608 -20.93269 -20.65711 -20.05568 -19.40684 -19.01905 -16.89792 -16.51933 -15.91201 -15.68519 -15.52337 -14.87732 -14.56980 -14.43653 -14.28117 -13.74265 -13.42486 -13.19550 -12.93747 -12.79471 -12.47143 -12.20752 -11.88328 -11.76761 -11.45675 -11.39857 -11.31293 -11.17426 -11.02842 -10.86654 -10.72261 -10.61346 -10.48200 -10.17658 -10.06391 -9.97068 -9.85082 -9.58573 -9.51618 -9.45549 -9.28693 -8.58015 -8.51527 -7.37088 -6.13803 -4.19965 2.04183 2.41059 3.03499 3.26096 3.32690 3.41336 3.50281 4.03109 4.26032 4.38315 4.56583 4.63927 4.77006 4.82475 4.90858 4.96540 5.13106 5.20104 5.31474 5.32670 5.38970 5.42919 5.53564 5.64072 5.74012 5.82072 5.83241 5.87795 5.90593 5.99266 6.03920 6.09780 6.15151 6.24760 6.36112 6.41413 6.45191 6.47605 6.50335 6.60928 6.63731 6.74763 6.89317 7.03673 7.29481 7.31311 7.62307 7.82973 8.06553 8.18305 8.88793 9.47336 9.53872 10.92911 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.005234 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.434745 B = 5348.394791 C = 6282.434749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.140 3.860 4 N -0.468 5.468 5 C 0.189 3.811 6 C -0.071 4.071 7 H 0.114 0.886 8 C -0.150 4.150 9 C -0.133 4.133 10 H 0.106 0.894 11 C -0.120 4.120 12 N -0.285 5.285 13 N -0.333 5.333 14 C 0.412 3.588 15 N -0.467 5.467 16 C 0.193 3.807 17 C -0.548 4.548 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.109 3.891 26 C -0.134 4.134 27 C -0.170 4.170 28 C -0.187 4.187 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.089 0.911 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 -7.327 5.010 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.177 4.177 3 C 0.017 3.983 4 N -0.162 5.162 5 C -0.078 4.078 6 C -0.092 4.092 7 H 0.132 0.868 8 C -0.188 4.188 9 C -0.153 4.153 10 H 0.124 0.876 11 C -0.178 4.178 12 N -0.124 5.124 13 N -0.177 5.177 14 C 0.056 3.944 15 N -0.191 5.191 16 C 0.070 3.930 17 C -0.587 4.587 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.530 5.530 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.019 4.019 26 C -0.153 4.153 27 C -0.207 4.207 28 C -0.224 4.224 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.108 0.892 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.379 -7.505 5.733 14.033 hybrid contribution 0.183 1.414 -0.851 1.661 sum -10.196 -6.091 4.882 12.841 Atomic orbital electron populations 1.23817 0.95472 1.02000 1.00235 1.23157 0.96029 0.98548 0.99987 1.20887 0.91797 0.96231 0.89361 1.45829 1.10900 1.48781 1.10711 1.23180 0.97688 1.04824 0.82126 1.20018 0.92259 1.04581 0.92339 0.86789 1.23161 1.03138 0.95694 0.96809 1.22410 0.98294 0.94427 1.00138 0.87569 1.21330 1.00977 0.95564 0.99886 1.73751 0.96983 1.15510 1.26191 1.74619 1.21457 1.19913 1.01676 1.22445 0.82861 0.95635 0.93429 1.59343 1.23681 1.27039 1.09068 1.19958 0.96412 0.87278 0.89385 1.21745 1.32000 1.05567 0.99347 0.91331 1.24869 0.95937 0.97828 0.94674 1.69928 1.45203 1.29186 1.08725 0.86629 0.80925 0.80869 0.80016 1.20386 1.21200 1.19676 1.21412 0.90863 0.95039 0.94569 1.22130 0.91326 1.00868 1.00977 1.22984 0.99672 0.98767 0.99248 1.22944 1.04042 0.94502 1.00922 0.88075 0.88455 0.86578 0.89309 0.87147 0.87266 0.88401 0.91051 0.92656 0.92896 0.93173 0.95080 0.92771 0.91593 0.91436 0.87765 0.89400 0.88440 0.89200 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 14.32 29.01 0.42 -1.39 16 2 C -0.16 -2.04 9.85 -36.03 -0.35 -2.39 16 3 C 0.14 2.14 6.44 -5.20 -0.03 2.11 16 4 N -0.47 -8.82 2.79 -115.37 -0.32 -9.14 16 5 C 0.19 3.48 6.72 -154.01 -1.04 2.44 16 6 C -0.07 -0.99 6.00 -91.77 -0.55 -1.54 16 7 H 0.11 1.36 7.53 -51.93 -0.39 0.97 16 8 C -0.15 -1.84 9.79 -26.73 -0.26 -2.10 16 9 C -0.13 -1.54 6.41 -90.62 -0.58 -2.12 16 10 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.12 -1.52 9.13 37.16 0.34 -1.18 16 12 N -0.28 -6.08 10.95 32.99 0.36 -5.72 16 13 N -0.33 -7.72 11.10 30.32 0.34 -7.39 16 14 C 0.41 8.93 5.83 -318.87 -1.86 7.07 16 15 N -0.47 -9.86 4.71 -175.88 -0.83 -10.69 16 16 C 0.19 4.68 4.88 -4.98 -0.02 4.65 16 17 C -0.55 -14.85 7.64 -34.44 -0.26 -15.12 16 18 H 0.07 1.97 6.31 -52.49 -0.33 1.64 16 19 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 20 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.11 2.15 4.55 -3.83 -0.02 2.13 16 26 C -0.13 -2.29 4.95 -90.62 -0.45 -2.74 16 27 C -0.17 -2.80 10.18 -26.69 -0.27 -3.07 16 28 C -0.19 -2.67 10.26 -26.69 -0.27 -2.94 16 29 H 0.10 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.10 0.86 7.84 -52.49 -0.41 0.45 16 31 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.09 1.16 7.08 -51.93 -0.37 0.79 16 33 H 0.11 1.87 6.19 -51.93 -0.32 1.55 16 34 H 0.11 1.54 7.83 -51.93 -0.41 1.13 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.05 7.22 -51.93 -0.37 0.68 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.05 1.27 7.32 -51.93 -0.38 0.89 16 40 H 0.03 0.80 6.28 -51.93 -0.33 0.47 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.07 1.28 7.89 -51.93 -0.41 0.87 16 43 H 0.07 1.52 6.15 -51.93 -0.32 1.20 16 44 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 46 H 0.10 1.75 8.03 -51.93 -0.42 1.34 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -30.78 391.32 -11.98 -42.76 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.82 Total: 6.21 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -5.32 Total: -14.34 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 0.28 Total: -57.51 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.78 -11.98 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338801948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.225 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds