Wall clock time and date at job start Tue Mar 31 2020 11:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00172 * 2 1 4 4 N 1.46495 * 109.47053 * 125.00221 * 3 2 1 5 5 C 1.36742 * 127.13504 * 269.77881 * 4 3 2 6 6 C 1.50700 * 126.34933 * 359.96505 * 5 4 3 7 7 H 1.09001 * 115.54826 * 334.61786 * 6 5 4 8 8 C 1.52997 * 117.49763 * 188.91049 * 6 5 4 9 9 C 1.52997 * 60.00045 * 252.51007 * 8 6 5 10 10 H 1.08996 * 117.50354 * 252.51318 * 9 8 6 11 11 C 1.53005 * 117.51765 * 107.48011 * 9 8 6 12 12 N 1.30294 * 107.30291 * 180.22876 * 5 4 3 13 13 N 1.28529 * 110.05717 * 359.77668 * 12 5 4 14 14 C 1.31219 * 109.85616 * 359.97438 * 13 12 5 15 15 N 1.38587 * 126.47019 * 179.97438 * 14 13 12 16 16 C 1.46905 * 110.99648 * 254.05323 * 15 14 13 17 17 C 1.50694 * 109.47263 * 59.90901 * 16 15 14 18 18 H 1.07997 * 120.00119 * 4.14326 * 17 16 15 19 19 C 1.37878 * 119.99722 * 184.14355 * 17 16 15 20 20 N 1.31512 * 120.00095 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99818 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47051 * 90.00013 * 21 19 17 23 23 H 1.48504 * 109.47036 * 209.99805 * 21 19 17 24 24 H 1.48502 * 109.47101 * 329.99945 * 21 19 17 25 25 C 1.46893 * 111.00123 * 18.00256 * 15 14 13 26 26 C 1.52998 * 109.47322 * 166.08549 * 25 15 14 27 27 C 1.52994 * 117.49830 * 117.58181 * 26 25 15 28 28 C 1.53001 * 117.50006 * 186.24553 * 26 25 15 29 29 H 1.08003 * 119.99687 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99831 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00142 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47131 * 4.99938 * 3 2 1 33 33 H 1.08997 * 109.47450 * 245.00401 * 3 2 1 34 34 H 1.08997 * 117.50476 * 359.97438 * 8 6 5 35 35 H 1.09004 * 117.49893 * 145.02286 * 8 6 5 36 36 H 1.08993 * 109.47279 * 351.37820 * 11 9 8 37 37 H 1.09001 * 109.46797 * 111.37445 * 11 9 8 38 38 H 1.08999 * 109.47088 * 231.37415 * 11 9 8 39 39 H 1.08999 * 109.46746 * 179.91158 * 16 15 14 40 40 H 1.09004 * 109.46950 * 299.90883 * 16 15 14 41 41 H 0.97004 * 119.99753 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.46918 * 46.08829 * 25 15 14 43 43 H 1.08999 * 109.47645 * 286.08792 * 25 15 14 44 44 H 1.09004 * 115.54680 * 331.91615 * 26 25 15 45 45 H 1.09002 * 117.50058 * 215.00524 * 27 26 25 46 46 H 1.08996 * 117.50342 * 0.03008 * 27 26 25 47 47 H 1.08995 * 117.50186 * 359.97438 * 28 26 25 48 48 H 1.08998 * 117.49460 * 144.97871 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7460 1.7972 2.3930 6 6 1.4509 2.3869 2.8892 7 1 0.8154 2.8350 2.1255 8 6 1.4551 3.0352 4.2751 9 6 0.7604 1.6887 4.0625 10 1 -0.3294 1.6777 4.0708 11 6 1.4373 0.4448 4.6418 12 7 3.8389 1.6415 3.0851 13 7 4.7518 1.1091 2.3536 14 6 4.2862 0.8945 1.1457 15 7 4.9786 0.3353 0.0834 16 6 5.3396 1.3587 -0.9068 17 6 6.2103 2.4023 -0.2559 18 1 6.5248 2.2798 0.7700 19 6 6.6055 3.5134 -0.9702 20 7 6.2221 3.6628 -2.2193 21 14 7.6855 4.8068 -0.1637 22 1 9.1139 4.4652 -0.3824 23 1 7.3970 6.1353 -0.7613 24 1 7.4039 4.8479 1.2938 25 6 6.1689 -0.3865 0.5523 26 6 6.7081 -1.2683 -0.5759 27 6 8.1157 -0.9690 -1.0951 28 6 7.8629 -2.2148 -0.2423 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 2.3943 3.0348 4.8282 35 1 0.8221 3.9101 4.4233 36 1 2.4298 0.7081 5.0072 37 1 0.8385 0.0555 5.4652 38 1 1.5257 -0.3155 3.8657 39 1 5.8832 0.8931 -1.7288 40 1 4.4339 1.8288 -1.2901 41 1 6.5004 4.4444 -2.7219 42 1 5.9028 -1.0105 1.4055 43 1 6.9342 0.3299 0.8508 44 1 5.9678 -1.6124 -1.2982 45 1 8.3017 -1.1163 -2.1590 46 1 8.6580 -0.1443 -0.6327 47 1 8.2389 -2.2091 0.7807 48 1 7.8822 -3.1818 -0.7449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338801948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:47 Heat of formation + Delta-G solvation = 143.965364 kcal Electronic energy + Delta-G solvation = -27707.273546 eV Core-core repulsion = 24186.608046 eV Total energy + Delta-G solvation = -3520.665500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.82819 -39.53236 -38.58226 -37.22100 -36.78998 -34.65195 -33.58389 -30.78425 -29.52980 -29.16865 -27.82770 -27.07049 -24.95963 -24.40517 -23.14741 -22.13818 -21.93387 -21.26719 -20.78323 -20.31456 -18.74149 -18.03416 -17.42418 -17.25814 -16.82054 -16.38237 -16.14384 -15.81809 -15.48075 -15.18616 -14.81704 -14.52214 -14.48724 -14.06433 -13.75742 -13.60473 -13.30453 -13.16575 -13.14444 -12.88675 -12.66793 -12.47738 -12.42912 -12.36520 -12.32245 -12.19035 -12.06691 -12.03136 -11.60783 -11.21511 -11.17374 -11.00057 -10.88132 -10.74477 -10.66352 -10.47445 -10.20971 -9.08065 -8.27551 -6.39926 0.92178 1.02917 1.25744 1.27670 1.39105 1.73230 1.95258 2.30106 2.89453 2.93867 3.02018 3.11814 3.40979 3.63569 3.81896 3.86855 3.87901 3.96292 4.05036 4.09027 4.17972 4.26711 4.28915 4.48795 4.50787 4.55932 4.58099 4.75726 4.82072 4.88081 4.91380 4.94035 4.96182 5.00356 5.07798 5.12398 5.16964 5.18004 5.23262 5.24493 5.32703 5.37959 5.49500 5.61033 5.64190 5.66857 5.75863 5.92165 6.03156 6.49632 6.73757 7.29141 7.94732 8.77139 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010502 B = 0.005234 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.434745 B = 5348.394791 C = 6282.434749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.190 4.190 3 C 0.138 3.862 4 N -0.469 5.469 5 C 0.205 3.795 6 C -0.096 4.096 7 H 0.142 0.858 8 C -0.147 4.147 9 C -0.109 4.109 10 H 0.147 0.853 11 C -0.120 4.120 12 N -0.323 5.323 13 N -0.368 5.368 14 C 0.389 3.611 15 N -0.456 5.456 16 C 0.215 3.785 17 C -0.551 4.551 18 H 0.046 0.954 19 C 0.029 3.971 20 N -0.913 5.913 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.274 1.274 24 H -0.288 1.288 25 C 0.118 3.882 26 C -0.151 4.151 27 C -0.181 4.181 28 C -0.152 4.152 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.131 0.869 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.267 0.733 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.095 0.905 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 -7.569 5.245 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.209 4.209 3 C 0.017 3.983 4 N -0.162 5.162 5 C -0.063 4.063 6 C -0.117 4.117 7 H 0.159 0.841 8 C -0.184 4.184 9 C -0.128 4.128 10 H 0.165 0.835 11 C -0.177 4.177 12 N -0.161 5.161 13 N -0.212 5.212 14 C 0.031 3.969 15 N -0.179 5.179 16 C 0.090 3.910 17 C -0.590 4.590 18 H 0.064 0.936 19 C -0.171 4.171 20 N -0.552 5.552 21 Si 0.766 3.234 22 H -0.193 1.193 23 H -0.199 1.199 24 H -0.214 1.214 25 C -0.010 4.010 26 C -0.170 4.170 27 C -0.218 4.218 28 C -0.189 4.189 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.149 0.851 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.144 -7.756 5.964 16.385 hybrid contribution 0.924 1.479 -0.837 1.934 sum -12.219 -6.277 5.127 14.663 Atomic orbital electron populations 1.24129 0.94159 1.04010 0.95158 1.22844 0.96909 0.96514 1.04589 1.21087 0.91393 0.98812 0.87050 1.46147 1.10448 1.47803 1.11822 1.24140 0.98449 1.02177 0.81514 1.20421 0.90848 1.06499 0.93923 0.84064 1.23233 1.02781 0.97556 0.94871 1.22553 0.99984 0.93130 0.97129 0.83513 1.21313 1.00170 0.95967 1.00298 1.73677 0.98030 1.17425 1.26999 1.74486 1.23079 1.20880 1.02735 1.22536 0.84188 0.97011 0.93181 1.59341 1.23920 1.25867 1.08810 1.19541 0.94829 0.87099 0.89552 1.21820 1.32247 1.06543 0.98389 0.93559 1.25461 0.97053 0.99394 0.95220 1.69988 1.46013 1.29845 1.09391 0.85838 0.80085 0.79409 0.78073 1.19305 1.19912 1.21433 1.21313 0.89489 0.94395 0.95795 1.22071 0.91970 1.02272 1.00671 1.22963 0.98865 0.99710 1.00251 1.23043 1.00200 0.94664 1.00984 0.86012 0.86224 0.88346 0.86703 0.89729 0.89916 0.85087 0.94012 0.89936 0.94597 0.94401 0.96574 0.92419 0.91681 0.94831 0.87333 0.88205 0.90750 0.88702 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 14.32 67.78 0.97 -1.33 16 2 C -0.19 -4.68 9.85 25.65 0.25 -4.43 16 3 C 0.14 4.20 6.44 85.63 0.55 4.75 16 4 N -0.47 -18.12 2.79 -518.92 -1.45 -19.57 16 5 C 0.21 7.62 6.72 137.64 0.93 8.55 16 6 C -0.10 -2.45 6.00 -11.54 -0.07 -2.52 16 7 H 0.14 2.81 7.53 -2.39 -0.02 2.79 16 8 C -0.15 -3.25 9.79 30.59 0.30 -2.95 16 9 C -0.11 -2.15 6.41 -10.79 -0.07 -2.22 16 10 H 0.15 1.83 8.14 -2.39 -0.02 1.81 16 11 C -0.12 -2.88 9.13 71.98 0.66 -2.22 16 12 N -0.32 -14.41 10.95 -49.53 -0.54 -14.95 16 13 N -0.37 -18.14 11.10 -58.00 -0.64 -18.79 16 14 C 0.39 17.73 5.83 260.11 1.52 19.24 16 15 N -0.46 -20.39 4.71 -710.36 -3.35 -23.74 16 16 C 0.21 10.94 4.88 85.55 0.42 11.36 16 17 C -0.55 -31.30 7.64 25.60 0.20 -31.10 16 18 H 0.05 2.82 6.31 -2.91 -0.02 2.80 16 19 C 0.03 1.67 5.46 84.66 0.46 2.13 16 20 N -0.91 -52.70 13.29 21.45 0.28 -52.41 16 21 Si 0.94 46.24 29.54 68.60 2.03 48.27 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 25 C 0.12 4.95 4.55 86.30 0.39 5.34 16 26 C -0.15 -5.28 4.95 -10.80 -0.05 -5.33 16 27 C -0.18 -6.07 10.18 30.62 0.31 -5.75 16 28 C -0.15 -4.18 10.26 30.62 0.31 -3.87 16 29 H 0.12 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.12 1.52 7.84 -2.91 -0.02 1.49 16 31 H 0.10 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.11 2.79 7.08 -2.39 -0.02 2.77 16 33 H 0.08 2.99 6.19 -2.39 -0.01 2.98 16 34 H 0.08 2.31 7.83 -2.39 -0.02 2.30 16 35 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.04 1.24 7.22 -2.39 -0.02 1.23 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.04 2.01 7.32 -2.39 -0.02 1.99 16 40 H 0.02 0.87 6.28 -2.38 -0.01 0.86 16 41 H 0.27 14.57 8.31 -92.70 -0.77 13.80 16 42 H 0.06 2.69 7.89 -2.38 -0.02 2.67 16 43 H 0.03 1.63 6.15 -2.39 -0.01 1.61 16 44 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 45 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.07 2.83 8.03 -2.39 -0.02 2.81 16 47 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -71.65 391.32 4.34 -67.31 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.94 Total: 24.21 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 7.07 Total: -10.34 kcal Atomic # 7 Polarization: -123.75 SS G_CDS: -5.70 Total: -129.45 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -71.65 4.34 -67.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338801948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.276 kcal (2) G-P(sol) polarization free energy of solvation -71.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds