Wall clock time and date at job start Tue Mar 31 2020 11:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00423 * 2 1 4 4 N 1.46495 * 109.47507 * 124.99772 * 3 2 1 5 5 C 1.36739 * 127.13497 * 90.63221 * 4 3 2 6 6 C 1.50702 * 126.34849 * 0.02562 * 5 4 3 7 7 H 1.09001 * 115.54957 * 25.30196 * 6 5 4 8 8 C 1.52996 * 117.49858 * 170.96776 * 6 5 4 9 9 C 1.53001 * 117.50225 * 239.62729 * 6 5 4 10 10 H 1.08997 * 117.49542 * 144.99450 * 9 6 5 11 11 C 1.52998 * 117.49646 * 359.97438 * 9 6 5 12 12 N 1.30294 * 107.30547 * 179.75560 * 5 4 3 13 13 N 1.28525 * 110.05160 * 0.24265 * 12 5 4 14 14 C 1.31218 * 109.86176 * 359.97438 * 13 12 5 15 15 N 1.38580 * 126.47156 * 180.02562 * 14 13 12 16 16 C 1.46908 * 110.99925 * 106.02766 * 15 14 13 17 17 C 1.50698 * 109.47115 * 298.25277 * 16 15 14 18 18 H 1.08001 * 120.00121 * 4.71229 * 17 16 15 19 19 C 1.37876 * 119.99896 * 184.71030 * 17 16 15 20 20 N 1.31515 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47401 * 90.00038 * 21 19 17 23 23 H 1.48501 * 109.47188 * 209.99724 * 21 19 17 24 24 H 1.48502 * 109.47351 * 329.99651 * 21 19 17 25 25 C 1.46896 * 111.00199 * 342.07083 * 15 14 13 26 26 C 1.53001 * 109.47193 * 196.13634 * 25 15 14 27 27 C 1.53000 * 117.49842 * 243.57363 * 26 25 15 28 28 C 1.53000 * 117.50068 * 174.91375 * 26 25 15 29 29 H 1.07994 * 120.00505 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99876 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99659 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46612 * 4.99313 * 3 2 1 33 33 H 1.09003 * 109.46847 * 245.00448 * 3 2 1 34 34 H 1.09006 * 117.50223 * 215.00721 * 8 6 5 35 35 H 1.08996 * 117.50236 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47042 * 59.99940 * 11 9 6 37 37 H 1.08998 * 109.46842 * 179.97438 * 11 9 6 38 38 H 1.08995 * 109.47051 * 299.99760 * 11 9 6 39 39 H 1.09002 * 109.46885 * 58.25845 * 16 15 14 40 40 H 1.09006 * 109.46636 * 178.25822 * 16 15 14 41 41 H 0.96998 * 119.99972 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47395 * 316.13623 * 25 15 14 43 43 H 1.09008 * 109.46918 * 76.13960 * 25 15 14 44 44 H 1.08996 * 115.55001 * 29.24424 * 26 25 15 45 45 H 1.08997 * 117.50275 * 359.97438 * 27 26 25 46 46 H 1.09003 * 117.50104 * 145.02424 * 27 26 25 47 47 H 1.08996 * 117.50482 * 214.98077 * 28 26 25 48 48 H 1.09007 * 117.49459 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2949 0.9115 1.1405 6 6 5.0528 0.3268 -0.0236 7 1 4.6932 0.6153 -1.0113 8 6 6.5590 0.1191 0.1469 9 6 5.6159 -1.0866 0.1382 10 1 5.6265 -1.7279 -0.7430 11 6 5.3669 -1.7980 1.4696 12 7 4.7598 1.1154 2.3404 13 7 3.8464 1.6274 3.0857 14 6 2.7409 1.7793 2.3954 15 7 1.5441 2.3005 2.8607 16 6 1.3226 3.6563 2.3403 17 6 2.4241 4.5653 2.8213 18 1 3.2503 4.1601 3.3868 19 6 2.3773 5.9141 2.5395 20 7 1.3711 6.4075 1.8513 21 14 3.7431 7.0406 3.1351 22 1 4.8087 7.1151 2.1035 23 1 3.1938 8.3988 3.3783 24 1 4.3126 6.5038 4.3972 25 6 1.4992 2.2864 4.3289 26 6 0.0553 2.4786 4.7969 27 6 -0.2638 3.7382 5.6047 28 6 -0.2206 2.3743 6.2982 29 1 -0.5401 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3586 2.1316 0.0894 33 1 2.6213 1.4025 -0.9315 34 1 7.1903 0.2708 -0.7287 35 1 7.0017 0.4048 1.1010 36 1 4.2938 -1.8948 1.6348 37 1 5.8208 -2.7886 1.4426 38 1 5.8083 -1.2177 2.2798 39 1 1.3218 3.6315 1.2505 40 1 0.3622 4.0296 2.6960 41 1 1.3383 7.3564 1.6527 42 1 1.8756 1.3311 4.6948 43 1 2.1183 3.0943 4.7192 44 1 -0.7123 2.1086 4.1173 45 1 0.5550 4.4298 5.8031 46 1 -1.2416 4.1967 5.4568 47 1 -1.1698 1.9361 6.6064 48 1 0.6266 2.1683 6.9525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338801951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:53 Heat of formation + Delta-G solvation = 158.579535 kcal Electronic energy + Delta-G solvation = -27730.108881 eV Core-core repulsion = 24210.077099 eV Total energy + Delta-G solvation = -3520.031782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.30259 -38.05082 -37.43533 -35.88166 -35.32274 -32.55866 -32.33901 -29.29034 -28.24196 -27.45210 -26.58255 -25.29107 -23.67204 -22.58739 -21.83185 -20.96236 -20.44234 -20.21949 -19.49606 -18.90319 -16.91744 -16.50937 -15.92235 -15.64761 -15.46528 -14.85814 -14.76809 -14.40942 -14.18339 -13.68527 -13.45956 -13.20041 -12.92742 -12.78195 -12.41429 -12.15367 -11.91768 -11.75971 -11.46715 -11.39316 -11.28392 -11.18179 -11.00465 -10.86911 -10.68858 -10.59620 -10.49725 -10.15531 -10.06475 -9.97141 -9.82247 -9.64427 -9.48481 -9.42112 -9.24622 -8.59808 -8.51732 -7.36020 -6.13780 -4.20009 2.09516 2.40322 3.03695 3.26469 3.32985 3.40094 3.48682 4.00762 4.28848 4.38053 4.54321 4.67179 4.74055 4.87189 4.89790 5.03822 5.11245 5.20226 5.24469 5.35223 5.36523 5.46354 5.56797 5.67383 5.74390 5.81455 5.86480 5.87821 5.89222 6.00873 6.02738 6.10646 6.16330 6.24444 6.39227 6.44512 6.46818 6.48489 6.55792 6.60933 6.68123 6.79892 6.93530 7.03454 7.30156 7.32457 7.61765 7.82856 8.07081 8.19777 8.89103 9.47077 9.52870 10.92849 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.005292 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.607042 B = 5289.799597 C = 6257.310991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.174 4.174 3 C 0.141 3.859 4 N -0.469 5.469 5 C 0.185 3.815 6 C -0.072 4.072 7 H 0.116 0.884 8 C -0.150 4.150 9 C -0.135 4.135 10 H 0.107 0.893 11 C -0.121 4.121 12 N -0.284 5.284 13 N -0.334 5.334 14 C 0.413 3.587 15 N -0.465 5.465 16 C 0.194 3.806 17 C -0.549 4.549 18 H 0.069 0.931 19 C 0.070 3.930 20 N -0.891 5.891 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.271 1.271 25 C 0.109 3.891 26 C -0.133 4.133 27 C -0.169 4.169 28 C -0.187 4.187 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.055 0.945 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.190 -13.570 -4.270 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C 0.018 3.982 4 N -0.163 5.163 5 C -0.082 4.082 6 C -0.093 4.093 7 H 0.133 0.867 8 C -0.187 4.187 9 C -0.154 4.154 10 H 0.125 0.875 11 C -0.178 4.178 12 N -0.124 5.124 13 N -0.178 5.178 14 C 0.057 3.943 15 N -0.189 5.189 16 C 0.071 3.929 17 C -0.587 4.587 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.196 1.196 25 C -0.019 4.019 26 C -0.152 4.152 27 C -0.206 4.206 28 C -0.225 4.225 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.105 0.895 47 H 0.105 0.895 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.272 -13.608 -3.329 14.012 hybrid contribution 0.167 1.393 -0.784 1.607 sum 0.440 -12.215 -4.113 12.897 Atomic orbital electron populations 1.23908 0.95604 1.02312 0.97701 1.23008 0.96290 0.97718 1.02288 1.20880 0.92151 0.97610 0.87518 1.45857 1.11160 1.48586 1.10688 1.23197 0.82780 1.05492 0.96714 1.20041 0.95771 0.99609 0.93861 0.86657 1.23167 0.90640 1.00693 1.04235 1.22439 1.03423 0.89533 1.00049 0.87525 1.21335 1.01456 0.99494 0.95516 1.73750 1.23612 1.15439 0.99592 1.74636 0.96153 1.21177 1.25848 1.22483 0.92348 0.97437 0.82039 1.59319 1.22851 1.25895 1.10828 1.19951 0.98438 0.79476 0.95062 1.21760 1.07871 0.93174 1.35935 0.91321 1.24869 0.95659 0.98009 0.94732 1.69926 1.30305 1.13693 1.39021 0.86618 0.82206 0.79892 0.79605 1.20725 1.21086 1.19576 1.21421 0.94043 1.01759 0.84661 1.22119 0.98053 1.02237 0.92799 1.22977 1.02891 0.90849 1.03861 1.22940 1.02298 1.01869 0.95361 0.88195 0.87820 0.87265 0.87668 0.89011 0.88379 0.87256 0.92941 0.92621 0.91000 0.95786 0.92672 0.92755 0.91647 0.91210 0.87866 0.88398 0.89457 0.89471 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 14.32 29.02 0.42 -1.41 16 2 C -0.17 -2.22 9.85 -36.02 -0.35 -2.58 16 3 C 0.14 2.13 6.44 -5.19 -0.03 2.10 16 4 N -0.47 -8.76 2.79 -115.37 -0.32 -9.09 16 5 C 0.19 3.36 6.73 -154.02 -1.04 2.33 16 6 C -0.07 -0.97 5.99 -91.77 -0.55 -1.52 16 7 H 0.12 1.33 7.52 -51.93 -0.39 0.94 16 8 C -0.15 -1.79 9.79 -26.70 -0.26 -2.05 16 9 C -0.13 -1.52 6.41 -90.58 -0.58 -2.10 16 10 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 11 C -0.12 -1.50 9.13 37.16 0.34 -1.16 16 12 N -0.28 -6.02 10.95 32.99 0.36 -5.66 16 13 N -0.33 -7.74 10.98 30.31 0.33 -7.41 16 14 C 0.41 8.94 5.84 -318.88 -1.86 7.08 16 15 N -0.47 -9.87 4.70 -175.87 -0.83 -10.69 16 16 C 0.19 4.71 4.87 -4.97 -0.02 4.69 16 17 C -0.55 -14.89 7.52 -34.44 -0.26 -15.15 16 18 H 0.07 1.98 6.39 -52.49 -0.34 1.64 16 19 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 20 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.11 2.19 4.58 -3.83 -0.02 2.17 16 26 C -0.13 -2.31 5.09 -90.62 -0.46 -2.78 16 27 C -0.17 -2.85 10.18 -26.69 -0.27 -3.12 16 28 C -0.19 -2.74 10.25 -26.69 -0.27 -3.01 16 29 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.10 1.23 7.84 -52.48 -0.41 0.82 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.75 5.85 -51.93 -0.30 1.45 16 33 H 0.09 1.17 7.42 -51.93 -0.39 0.78 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.51 7.83 -51.93 -0.41 1.11 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.05 7.21 -51.93 -0.37 0.67 16 39 H 0.02 0.61 6.28 -51.93 -0.33 0.29 16 40 H 0.06 1.41 7.45 -51.93 -0.39 1.02 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 42 H 0.07 1.30 7.80 -51.93 -0.41 0.89 16 43 H 0.07 1.60 6.16 -51.92 -0.32 1.28 16 44 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 45 H 0.10 1.81 8.03 -51.93 -0.42 1.40 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -30.76 391.36 -12.00 -42.76 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.83 Total: 6.38 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -5.33 Total: -14.67 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.76 -12.00 -42.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338801951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.337 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds