Wall clock time and date at job start Tue Mar 31 2020 11:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00423 * 2 1 4 4 N 1.46495 * 109.47507 * 124.99772 * 3 2 1 5 5 C 1.36739 * 127.13497 * 90.63221 * 4 3 2 6 6 C 1.50702 * 126.34849 * 0.02562 * 5 4 3 7 7 H 1.09001 * 115.54957 * 25.30196 * 6 5 4 8 8 C 1.52996 * 117.49858 * 170.96776 * 6 5 4 9 9 C 1.53001 * 117.50225 * 239.62729 * 6 5 4 10 10 H 1.08997 * 117.49542 * 144.99450 * 9 6 5 11 11 C 1.52998 * 117.49646 * 359.97438 * 9 6 5 12 12 N 1.30294 * 107.30547 * 179.75560 * 5 4 3 13 13 N 1.28525 * 110.05160 * 0.24265 * 12 5 4 14 14 C 1.31218 * 109.86176 * 359.97438 * 13 12 5 15 15 N 1.38580 * 126.47156 * 180.02562 * 14 13 12 16 16 C 1.46908 * 110.99925 * 106.02766 * 15 14 13 17 17 C 1.50698 * 109.47115 * 298.25277 * 16 15 14 18 18 H 1.08001 * 120.00121 * 4.71229 * 17 16 15 19 19 C 1.37876 * 119.99896 * 184.71030 * 17 16 15 20 20 N 1.31515 * 119.99972 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47401 * 90.00038 * 21 19 17 23 23 H 1.48501 * 109.47188 * 209.99724 * 21 19 17 24 24 H 1.48502 * 109.47351 * 329.99651 * 21 19 17 25 25 C 1.46896 * 111.00199 * 342.07083 * 15 14 13 26 26 C 1.53001 * 109.47193 * 196.13634 * 25 15 14 27 27 C 1.53000 * 117.49842 * 243.57363 * 26 25 15 28 28 C 1.53000 * 117.50068 * 174.91375 * 26 25 15 29 29 H 1.07994 * 120.00505 * 180.02562 * 1 2 3 30 30 H 1.08009 * 119.99876 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99659 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.46612 * 4.99313 * 3 2 1 33 33 H 1.09003 * 109.46847 * 245.00448 * 3 2 1 34 34 H 1.09006 * 117.50223 * 215.00721 * 8 6 5 35 35 H 1.08996 * 117.50236 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47042 * 59.99940 * 11 9 6 37 37 H 1.08998 * 109.46842 * 179.97438 * 11 9 6 38 38 H 1.08995 * 109.47051 * 299.99760 * 11 9 6 39 39 H 1.09002 * 109.46885 * 58.25845 * 16 15 14 40 40 H 1.09006 * 109.46636 * 178.25822 * 16 15 14 41 41 H 0.96998 * 119.99972 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47395 * 316.13623 * 25 15 14 43 43 H 1.09008 * 109.46918 * 76.13960 * 25 15 14 44 44 H 1.08996 * 115.55001 * 29.24424 * 26 25 15 45 45 H 1.08997 * 117.50275 * 359.97438 * 27 26 25 46 46 H 1.09003 * 117.50104 * 145.02424 * 27 26 25 47 47 H 1.08996 * 117.50482 * 214.98077 * 28 26 25 48 48 H 1.09007 * 117.49459 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.2949 0.9115 1.1405 6 6 5.0528 0.3268 -0.0236 7 1 4.6932 0.6153 -1.0113 8 6 6.5590 0.1191 0.1469 9 6 5.6159 -1.0866 0.1382 10 1 5.6265 -1.7279 -0.7430 11 6 5.3669 -1.7980 1.4696 12 7 4.7598 1.1154 2.3404 13 7 3.8464 1.6274 3.0857 14 6 2.7409 1.7793 2.3954 15 7 1.5441 2.3005 2.8607 16 6 1.3226 3.6563 2.3403 17 6 2.4241 4.5653 2.8213 18 1 3.2503 4.1601 3.3868 19 6 2.3773 5.9141 2.5395 20 7 1.3711 6.4075 1.8513 21 14 3.7431 7.0406 3.1351 22 1 4.8087 7.1151 2.1035 23 1 3.1938 8.3988 3.3783 24 1 4.3126 6.5038 4.3972 25 6 1.4992 2.2864 4.3289 26 6 0.0553 2.4786 4.7969 27 6 -0.2638 3.7382 5.6047 28 6 -0.2206 2.3743 6.2982 29 1 -0.5401 -0.9352 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3586 2.1316 0.0894 33 1 2.6213 1.4025 -0.9315 34 1 7.1903 0.2708 -0.7287 35 1 7.0017 0.4048 1.1010 36 1 4.2938 -1.8948 1.6348 37 1 5.8208 -2.7886 1.4426 38 1 5.8083 -1.2177 2.2798 39 1 1.3218 3.6315 1.2505 40 1 0.3622 4.0296 2.6960 41 1 1.3383 7.3564 1.6527 42 1 1.8756 1.3311 4.6948 43 1 2.1183 3.0943 4.7192 44 1 -0.7123 2.1086 4.1173 45 1 0.5550 4.4298 5.8031 46 1 -1.2416 4.1967 5.4568 47 1 -1.1698 1.9361 6.6064 48 1 0.6266 2.1683 6.9525 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338801951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:52 Heat of formation + Delta-G solvation = 144.341933 kcal Electronic energy + Delta-G solvation = -27730.726270 eV Core-core repulsion = 24210.077099 eV Total energy + Delta-G solvation = -3520.649171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.83593 -39.51309 -38.57743 -37.22299 -36.76473 -34.64599 -33.58881 -30.77726 -29.52279 -29.16493 -27.85597 -27.04724 -25.00548 -24.36614 -23.13538 -22.09577 -21.86270 -21.31807 -20.95779 -20.18038 -18.76586 -18.00945 -17.44519 -17.19404 -16.83653 -16.39088 -16.14374 -15.80647 -15.52201 -15.09109 -14.82167 -14.70548 -14.37856 -14.04720 -13.80445 -13.45918 -13.28895 -13.16749 -13.08120 -13.00576 -12.62139 -12.56297 -12.39119 -12.36003 -12.30918 -12.20352 -12.06656 -11.95974 -11.62337 -11.20485 -11.16261 -11.00552 -10.89904 -10.73310 -10.65832 -10.46481 -10.21815 -9.07165 -8.27048 -6.39508 0.91061 1.02716 1.25901 1.28514 1.39475 1.73545 1.94289 2.30461 2.90127 2.93457 3.02166 3.13952 3.39776 3.62943 3.83839 3.85518 3.92950 3.97965 4.05312 4.10452 4.15437 4.22064 4.31482 4.48209 4.49615 4.57128 4.60222 4.76820 4.83003 4.88224 4.92831 4.94215 4.95149 4.99408 5.08910 5.12511 5.14961 5.19055 5.24566 5.24914 5.33770 5.39351 5.49684 5.58995 5.64554 5.72769 5.76485 5.90993 6.03347 6.50970 6.74125 7.29520 7.94509 8.77522 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.005292 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.607042 B = 5289.799597 C = 6257.310991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 C 0.136 3.864 4 N -0.469 5.469 5 C 0.203 3.797 6 C -0.097 4.097 7 H 0.142 0.858 8 C -0.146 4.146 9 C -0.111 4.111 10 H 0.147 0.853 11 C -0.121 4.121 12 N -0.321 5.321 13 N -0.369 5.369 14 C 0.389 3.611 15 N -0.452 5.452 16 C 0.216 3.784 17 C -0.553 4.553 18 H 0.046 0.954 19 C 0.031 3.969 20 N -0.912 5.912 21 Si 0.939 3.061 22 H -0.281 1.281 23 H -0.270 1.270 24 H -0.279 1.279 25 C 0.117 3.883 26 C -0.149 4.149 27 C -0.181 4.181 28 C -0.153 4.153 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.012 0.988 40 H 0.041 0.959 41 H 0.267 0.733 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.119 0.881 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -15.371 -5.753 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.202 4.202 3 C 0.014 3.986 4 N -0.162 5.162 5 C -0.065 4.065 6 C -0.117 4.117 7 H 0.160 0.840 8 C -0.184 4.184 9 C -0.130 4.130 10 H 0.164 0.836 11 C -0.178 4.178 12 N -0.160 5.160 13 N -0.213 5.213 14 C 0.031 3.969 15 N -0.176 5.176 16 C 0.091 3.909 17 C -0.592 4.592 18 H 0.064 0.936 19 C -0.170 4.170 20 N -0.551 5.551 21 Si 0.765 3.235 22 H -0.207 1.207 23 H -0.195 1.195 24 H -0.205 1.205 25 C -0.010 4.010 26 C -0.167 4.167 27 C -0.218 4.218 28 C -0.190 4.190 29 H 0.143 0.857 30 H 0.115 0.885 31 H 0.139 0.861 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.128 0.872 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.137 0.863 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.090 -15.417 -4.816 16.152 hybrid contribution 0.277 1.885 -0.345 1.936 sum 0.367 -13.532 -5.161 14.487 Atomic orbital electron populations 1.24102 0.95304 1.03203 0.95661 1.22903 0.96546 0.96742 1.04049 1.21124 0.91854 0.98394 0.87195 1.46151 1.11851 1.47758 1.10477 1.24149 0.82485 1.02797 0.97056 1.20437 0.96453 1.01823 0.93017 0.83999 1.23239 0.89912 1.00893 1.04357 1.22580 1.01095 0.88681 1.00616 0.83564 1.21322 1.00356 1.00688 0.95448 1.73685 1.23767 1.17444 1.01096 1.74507 0.97130 1.22058 1.27596 1.22568 0.92196 0.98698 0.83441 1.59324 1.23066 1.23949 1.11234 1.19530 0.96661 0.80672 0.94013 1.21834 1.07943 0.93900 1.35480 0.93593 1.25445 0.97421 0.99111 0.95009 1.69981 1.31295 1.14140 1.39692 0.85852 0.80038 0.78992 0.78617 1.20727 1.19496 1.20455 1.21311 0.95506 1.00159 0.84023 1.22064 0.96208 1.03495 0.94963 1.22940 1.02547 0.91255 1.05027 1.23039 1.03834 0.99127 0.92985 0.85672 0.88529 0.86127 0.89765 0.86498 0.85151 0.89847 0.94464 0.89961 0.93954 0.97049 0.94081 0.92400 0.91802 0.94753 0.87234 0.90952 0.88246 0.86277 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 14.32 67.79 0.97 -2.13 16 2 C -0.18 -4.40 9.85 25.65 0.25 -4.15 16 3 C 0.14 4.03 6.44 85.64 0.55 4.58 16 4 N -0.47 -17.74 2.79 -518.91 -1.45 -19.18 16 5 C 0.20 7.39 6.73 137.64 0.93 8.32 16 6 C -0.10 -2.41 5.99 -11.54 -0.07 -2.48 16 7 H 0.14 2.78 7.52 -2.39 -0.02 2.76 16 8 C -0.15 -3.18 9.79 30.62 0.30 -2.88 16 9 C -0.11 -2.14 6.41 -10.77 -0.07 -2.21 16 10 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 11 C -0.12 -2.82 9.13 71.98 0.66 -2.17 16 12 N -0.32 -14.11 10.95 -49.54 -0.54 -14.65 16 13 N -0.37 -17.98 10.98 -58.01 -0.64 -18.62 16 14 C 0.39 17.48 5.84 260.12 1.52 19.00 16 15 N -0.45 -19.99 4.70 -710.34 -3.34 -23.33 16 16 C 0.22 10.91 4.87 85.55 0.42 11.33 16 17 C -0.55 -31.23 7.52 25.60 0.19 -31.04 16 18 H 0.05 2.79 6.39 -2.91 -0.02 2.77 16 19 C 0.03 1.75 5.46 84.65 0.46 2.21 16 20 N -0.91 -52.34 13.29 21.45 0.28 -52.06 16 21 Si 0.94 46.01 29.54 68.60 2.03 48.04 16 22 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 25 C 0.12 4.96 4.58 86.30 0.40 5.35 16 26 C -0.15 -5.20 5.09 -10.79 -0.05 -5.26 16 27 C -0.18 -6.15 10.18 30.62 0.31 -5.83 16 28 C -0.15 -4.26 10.25 30.62 0.31 -3.94 16 29 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 30 H 0.10 2.21 7.84 -2.91 -0.02 2.19 16 31 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.08 2.86 5.85 -2.39 -0.01 2.84 16 33 H 0.12 2.79 7.42 -2.39 -0.02 2.77 16 34 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.08 2.29 7.83 -2.39 -0.02 2.27 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 1.24 7.21 -2.39 -0.02 1.22 16 39 H 0.01 0.61 6.28 -2.39 -0.01 0.59 16 40 H 0.04 2.18 7.45 -2.38 -0.02 2.16 16 41 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.06 2.66 7.80 -2.39 -0.02 2.64 16 43 H 0.03 1.68 6.16 -2.38 -0.01 1.66 16 44 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 45 H 0.07 2.82 8.03 -2.39 -0.02 2.80 16 46 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 47 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 48 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -70.37 391.36 4.36 -66.01 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.94 Total: 25.08 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 7.08 Total: -11.30 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -5.68 Total: -127.84 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.37 4.36 -66.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338801951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.356 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds