Wall clock time and date at job start Tue Mar 31 2020 11:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99669 * 2 1 4 4 N 1.46499 * 109.46913 * 124.99940 * 3 2 1 5 5 C 1.36454 * 127.13938 * 275.64933 * 4 3 2 6 6 N 1.38590 * 126.46833 * 0.02562 * 5 4 3 7 7 C 1.47237 * 111.00063 * 95.14237 * 6 5 4 8 8 C 1.53084 * 108.47143 * 54.58202 * 7 6 5 9 9 C 1.50305 * 109.71985 * 48.96106 * 8 7 6 10 10 C 1.29818 * 122.89288 * 343.48484 * 9 8 7 11 11 C 1.50704 * 118.35988 * 180.37435 * 10 9 8 12 12 C 1.46847 * 110.99477 * 218.07300 * 6 5 4 13 13 N 1.31214 * 107.05437 * 180.26852 * 5 4 3 14 14 N 1.28522 * 109.86148 * 359.73965 * 13 5 4 15 15 C 1.30293 * 110.05635 * 0.02562 * 14 13 5 16 16 C 1.50699 * 126.34915 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47014 * 245.72564 * 16 15 14 18 18 C 1.53000 * 109.47262 * 125.73086 * 16 15 14 19 19 C 1.50699 * 109.47327 * 5.72368 * 16 15 14 20 20 H 1.08000 * 119.99695 * 0.02562 * 19 16 15 21 21 C 1.37873 * 120.00185 * 180.27725 * 19 16 15 22 22 N 1.31517 * 119.99674 * 359.72639 * 21 19 16 23 23 Si 1.86793 * 120.00123 * 179.72515 * 21 19 16 24 24 H 1.48508 * 109.47008 * 59.99915 * 23 21 19 25 25 H 1.48504 * 109.47235 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47497 * 299.99910 * 23 21 19 27 27 H 1.08000 * 119.99586 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00140 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47191 * 4.99496 * 3 2 1 31 31 H 1.08997 * 109.46940 * 244.99696 * 3 2 1 32 32 H 1.09001 * 109.63556 * 174.27414 * 7 6 5 33 33 H 1.09003 * 109.63771 * 294.67946 * 7 6 5 34 34 H 1.09001 * 109.42634 * 169.03782 * 8 7 6 35 35 H 1.08999 * 109.42750 * 288.88425 * 8 7 6 36 36 H 1.08003 * 118.55575 * 163.49808 * 9 8 7 37 37 H 1.09007 * 109.46866 * 359.97438 * 11 10 9 38 38 H 1.08999 * 109.47567 * 119.99561 * 11 10 9 39 39 H 1.09006 * 109.46958 * 239.99693 * 11 10 9 40 40 H 1.09004 * 109.33677 * 47.78353 * 12 6 5 41 41 H 1.08996 * 109.33736 * 167.29052 * 12 6 5 42 42 H 1.08998 * 109.47142 * 183.54578 * 17 16 15 43 43 H 1.09007 * 109.47263 * 303.54564 * 17 16 15 44 44 H 1.08999 * 109.47289 * 63.54303 * 17 16 15 45 45 H 1.09007 * 109.46531 * 299.99601 * 18 16 15 46 46 H 1.08998 * 109.47553 * 59.98992 * 18 16 15 47 47 H 1.08994 * 109.47370 * 180.02562 * 18 16 15 48 48 H 0.97004 * 119.99753 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7161 1.6927 2.4178 6 7 1.4890 2.1076 2.9105 7 6 0.7508 0.9808 3.5050 8 6 1.6417 0.3198 4.5598 9 6 2.2114 1.3696 5.4724 10 6 2.2191 2.6332 5.1752 11 6 2.8245 3.5972 6.1628 12 6 1.6543 3.1826 3.8971 13 7 3.8317 1.5776 3.0990 14 7 4.7741 1.1674 2.3274 15 6 4.3197 0.9982 1.1181 16 6 5.1101 0.5268 -0.0753 17 6 5.1981 1.6540 -1.1062 18 6 4.4151 -0.6838 -0.7015 19 6 6.4984 0.1379 0.3635 20 1 6.7800 0.2231 1.4026 21 6 7.4105 -0.3218 -0.5625 22 7 7.0674 -0.4260 -1.8279 23 14 9.1337 -0.7967 -0.0200 24 1 9.0537 -1.8923 0.9794 25 1 9.9141 -1.2567 -1.1967 26 1 9.8031 0.3808 0.5889 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 -0.1620 1.3478 3.9743 33 1 0.4986 0.2580 2.7290 34 1 1.0503 -0.3858 5.1433 35 1 2.4553 -0.2115 4.0659 36 1 2.6330 1.0588 6.4169 37 1 3.1860 3.0476 7.0320 38 1 3.6558 4.1236 5.6939 39 1 2.0692 4.3176 6.4771 40 1 2.3320 3.9374 3.4982 41 1 0.6857 3.6405 4.0976 42 1 5.7152 1.2934 -1.9954 43 1 4.1932 1.9783 -1.3767 44 1 5.7486 2.4932 -0.6810 45 1 4.3524 -1.4868 0.0331 46 1 3.4109 -0.4025 -1.0187 47 1 4.9869 -1.0250 -1.5643 48 1 7.7091 -0.7498 -2.4793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338934700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:51 Heat of formation + Delta-G solvation = 132.985735 kcal Electronic energy + Delta-G solvation = -28418.817059 eV Core-core repulsion = 24897.675447 eV Total energy + Delta-G solvation = -3521.141613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.34122 -39.30272 -36.22016 -35.25129 -33.77657 -32.32563 -31.65184 -31.07267 -28.34722 -26.88022 -26.50507 -25.90244 -25.19507 -24.51747 -22.70128 -21.74144 -20.49561 -20.14919 -18.92757 -18.04373 -16.54821 -16.11906 -15.80363 -15.55148 -14.99038 -14.78078 -14.43811 -14.35319 -14.04679 -13.58758 -13.40089 -13.35860 -12.80666 -12.55980 -12.29000 -12.23260 -11.97877 -11.82109 -11.78488 -11.56051 -11.44841 -11.27794 -11.03899 -10.89921 -10.73813 -10.63623 -10.56098 -10.12468 -10.01703 -9.93439 -9.68466 -9.52238 -9.37356 -8.87303 -8.65204 -8.43998 -8.36605 -7.86127 -6.00875 -4.05831 2.06866 2.43598 2.52782 2.99970 3.37846 3.39925 3.47007 3.76180 4.09342 4.46256 4.84812 4.88662 4.90890 4.97788 5.02161 5.19270 5.28439 5.32798 5.46001 5.49840 5.54008 5.55216 5.62689 5.68248 5.75604 5.82541 5.86785 5.87942 6.06900 6.15196 6.16731 6.25193 6.50698 6.53128 6.57757 6.64027 6.70746 6.73634 6.75551 6.77033 6.88500 7.15088 7.17766 7.32189 7.39225 7.66857 7.84591 7.86439 8.11624 8.34261 9.00637 9.57002 9.71586 11.02918 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.004923 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.178160 B = 5686.088331 C = 6867.206464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.166 4.166 3 C 0.137 3.863 4 N -0.469 5.469 5 C 0.305 3.695 6 N -0.450 5.450 7 C 0.060 3.940 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.148 4.148 11 C -0.109 4.109 12 C 0.109 3.891 13 N -0.305 5.305 14 N -0.293 5.293 15 C 0.241 3.759 16 C 0.146 3.854 17 C -0.130 4.130 18 C -0.138 4.138 19 C -0.490 4.490 20 H 0.076 0.924 21 C 0.063 3.937 22 N -0.895 5.895 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.276 1.276 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.008 0.992 44 H 0.033 0.967 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.096 0.904 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.888 4.088 6.159 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C 0.014 3.986 4 N -0.162 5.162 5 C -0.051 4.051 6 N -0.173 5.173 7 C -0.068 4.068 8 C -0.159 4.159 9 C -0.150 4.150 10 C -0.150 4.150 11 C -0.166 4.166 12 C -0.019 4.019 13 N -0.149 5.149 14 N -0.130 5.130 15 C -0.026 4.026 16 C 0.144 3.856 17 C -0.189 4.189 18 C -0.196 4.196 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.138 4.138 22 N -0.535 5.535 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.202 1.202 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.027 0.973 44 H 0.053 0.947 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.115 0.885 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.120 4.285 6.749 17.104 hybrid contribution 0.452 -0.660 -0.168 0.817 sum -14.669 3.625 6.581 16.481 Atomic orbital electron populations 1.23845 0.95481 1.01989 0.99954 1.23320 0.96195 0.98755 1.00170 1.20980 0.91947 0.96507 0.89123 1.46321 1.10389 1.51329 1.08157 1.22166 0.93190 1.06275 0.83493 1.59314 1.12576 1.10069 1.35321 1.22321 0.95986 0.92094 0.96383 1.21013 0.99795 0.97935 0.97127 1.21715 1.00647 0.93499 0.99188 1.21239 1.00923 0.95659 0.97141 1.20775 1.00026 0.98339 0.97450 1.20843 1.00978 0.92366 0.87666 1.74728 0.96730 1.17925 1.25498 1.74130 1.21777 1.17419 0.99721 1.26163 0.79691 0.97896 0.98828 1.16895 0.92488 0.92071 0.84194 1.21930 0.97282 0.97586 1.02088 1.22064 0.97119 0.97976 1.02469 1.21030 0.94034 1.42216 0.95635 0.90620 1.24858 0.98684 0.95390 0.94818 1.69777 1.35055 1.47406 1.01226 0.86515 0.83878 0.79036 0.77776 1.20284 1.21479 1.20192 0.88179 0.88277 0.86341 0.88990 0.87189 0.89696 0.90189 0.90992 0.90385 0.88026 0.92406 0.91670 0.92423 0.89847 0.89222 0.88522 0.97318 0.94738 0.95259 0.96309 0.88537 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 13.83 29.01 0.40 -1.44 16 2 C -0.17 -2.22 8.65 -36.02 -0.31 -2.53 16 3 C 0.14 2.07 5.64 -5.19 -0.03 2.04 16 4 N -0.47 -8.83 2.79 -115.37 -0.32 -9.15 16 5 C 0.30 5.62 5.64 -318.86 -1.80 3.82 16 6 N -0.45 -6.55 5.06 -175.91 -0.89 -7.44 16 7 C 0.06 0.75 6.02 -3.60 -0.02 0.73 16 8 C -0.12 -1.67 5.53 -28.03 -0.15 -1.83 16 9 C -0.13 -1.86 8.62 -35.88 -0.31 -2.17 16 10 C -0.15 -2.00 4.87 -101.00 -0.49 -2.49 16 11 C -0.11 -1.26 10.01 36.01 0.36 -0.90 16 12 C 0.11 1.43 5.55 -5.27 -0.03 1.40 16 13 N -0.31 -6.60 9.09 30.32 0.28 -6.32 16 14 N -0.29 -7.22 11.00 32.99 0.36 -6.85 16 15 C 0.24 5.49 6.34 -154.01 -0.98 4.51 16 16 C 0.15 3.49 0.47 -156.81 -0.07 3.41 16 17 C -0.13 -2.97 8.10 37.16 0.30 -2.67 16 18 C -0.14 -3.07 7.74 37.16 0.29 -2.78 16 19 C -0.49 -13.28 7.91 -34.44 -0.27 -13.55 16 20 H 0.08 2.18 6.95 -52.49 -0.36 1.82 16 21 C 0.06 1.67 5.15 -17.82 -0.09 1.57 16 22 N -0.90 -23.60 9.39 55.43 0.52 -23.08 16 23 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 28 H 0.10 0.92 7.84 -52.49 -0.41 0.51 16 29 H 0.12 1.78 6.88 -52.49 -0.36 1.42 16 30 H 0.09 1.22 7.79 -51.93 -0.40 0.81 16 31 H 0.11 1.72 4.58 -51.93 -0.24 1.49 16 32 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 36 H 0.10 1.37 7.63 -52.48 -0.40 0.97 16 37 H 0.06 0.64 7.61 -51.93 -0.40 0.25 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.20 8.02 -51.93 -0.42 0.78 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 2.36 6.16 -51.93 -0.32 2.04 16 43 H 0.01 0.16 5.70 -51.93 -0.30 -0.14 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.02 0.35 3.97 -51.93 -0.21 0.14 16 47 H 0.10 2.34 6.08 -51.93 -0.32 2.02 16 48 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -29.40 365.24 -10.18 -39.58 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.40 Total: 4.22 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -3.21 Total: -12.88 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -0.05 Total: -52.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.40 -10.18 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338934700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.568 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds