Wall clock time and date at job start Tue Mar 31 2020 11:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99669 * 2 1 4 4 N 1.46499 * 109.46913 * 124.99940 * 3 2 1 5 5 C 1.36454 * 127.13938 * 275.64933 * 4 3 2 6 6 N 1.38590 * 126.46833 * 0.02562 * 5 4 3 7 7 C 1.47237 * 111.00063 * 95.14237 * 6 5 4 8 8 C 1.53084 * 108.47143 * 54.58202 * 7 6 5 9 9 C 1.50305 * 109.71985 * 48.96106 * 8 7 6 10 10 C 1.29818 * 122.89288 * 343.48484 * 9 8 7 11 11 C 1.50704 * 118.35988 * 180.37435 * 10 9 8 12 12 C 1.46847 * 110.99477 * 218.07300 * 6 5 4 13 13 N 1.31214 * 107.05437 * 180.26852 * 5 4 3 14 14 N 1.28522 * 109.86148 * 359.73965 * 13 5 4 15 15 C 1.30293 * 110.05635 * 0.02562 * 14 13 5 16 16 C 1.50699 * 126.34915 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47014 * 245.72564 * 16 15 14 18 18 C 1.53000 * 109.47262 * 125.73086 * 16 15 14 19 19 C 1.50699 * 109.47327 * 5.72368 * 16 15 14 20 20 H 1.08000 * 119.99695 * 0.02562 * 19 16 15 21 21 C 1.37873 * 120.00185 * 180.27725 * 19 16 15 22 22 N 1.31517 * 119.99674 * 359.72639 * 21 19 16 23 23 Si 1.86793 * 120.00123 * 179.72515 * 21 19 16 24 24 H 1.48508 * 109.47008 * 59.99915 * 23 21 19 25 25 H 1.48504 * 109.47235 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47497 * 299.99910 * 23 21 19 27 27 H 1.08000 * 119.99586 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00140 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47191 * 4.99496 * 3 2 1 31 31 H 1.08997 * 109.46940 * 244.99696 * 3 2 1 32 32 H 1.09001 * 109.63556 * 174.27414 * 7 6 5 33 33 H 1.09003 * 109.63771 * 294.67946 * 7 6 5 34 34 H 1.09001 * 109.42634 * 169.03782 * 8 7 6 35 35 H 1.08999 * 109.42750 * 288.88425 * 8 7 6 36 36 H 1.08003 * 118.55575 * 163.49808 * 9 8 7 37 37 H 1.09007 * 109.46866 * 359.97438 * 11 10 9 38 38 H 1.08999 * 109.47567 * 119.99561 * 11 10 9 39 39 H 1.09006 * 109.46958 * 239.99693 * 11 10 9 40 40 H 1.09004 * 109.33677 * 47.78353 * 12 6 5 41 41 H 1.08996 * 109.33736 * 167.29052 * 12 6 5 42 42 H 1.08998 * 109.47142 * 183.54578 * 17 16 15 43 43 H 1.09007 * 109.47263 * 303.54564 * 17 16 15 44 44 H 1.08999 * 109.47289 * 63.54303 * 17 16 15 45 45 H 1.09007 * 109.46531 * 299.99601 * 18 16 15 46 46 H 1.08998 * 109.47553 * 59.98992 * 18 16 15 47 47 H 1.08994 * 109.47370 * 180.02562 * 18 16 15 48 48 H 0.97004 * 119.99753 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.7161 1.6927 2.4178 6 7 1.4890 2.1076 2.9105 7 6 0.7508 0.9808 3.5050 8 6 1.6417 0.3198 4.5598 9 6 2.2114 1.3696 5.4724 10 6 2.2191 2.6332 5.1752 11 6 2.8245 3.5972 6.1628 12 6 1.6543 3.1826 3.8971 13 7 3.8317 1.5776 3.0990 14 7 4.7741 1.1674 2.3274 15 6 4.3197 0.9982 1.1181 16 6 5.1101 0.5268 -0.0753 17 6 5.1981 1.6540 -1.1062 18 6 4.4151 -0.6838 -0.7015 19 6 6.4984 0.1379 0.3635 20 1 6.7800 0.2231 1.4026 21 6 7.4105 -0.3218 -0.5625 22 7 7.0674 -0.4260 -1.8279 23 14 9.1337 -0.7967 -0.0200 24 1 9.0537 -1.8923 0.9794 25 1 9.9141 -1.2567 -1.1967 26 1 9.8031 0.3808 0.5889 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3585 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 -0.1620 1.3478 3.9743 33 1 0.4986 0.2580 2.7290 34 1 1.0503 -0.3858 5.1433 35 1 2.4553 -0.2115 4.0659 36 1 2.6330 1.0588 6.4169 37 1 3.1860 3.0476 7.0320 38 1 3.6558 4.1236 5.6939 39 1 2.0692 4.3176 6.4771 40 1 2.3320 3.9374 3.4982 41 1 0.6857 3.6405 4.0976 42 1 5.7152 1.2934 -1.9954 43 1 4.1932 1.9783 -1.3767 44 1 5.7486 2.4932 -0.6810 45 1 4.3524 -1.4868 0.0331 46 1 3.4109 -0.4025 -1.0187 47 1 4.9869 -1.0250 -1.5643 48 1 7.7091 -0.7498 -2.4793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338934700.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:50 Heat of formation + Delta-G solvation = 118.567035 kcal Electronic energy + Delta-G solvation = -28419.442301 eV Core-core repulsion = 24897.675447 eV Total energy + Delta-G solvation = -3521.766854 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.87581 -40.46234 -37.78519 -36.77335 -34.91333 -33.66528 -33.10099 -32.56392 -29.92643 -27.98277 -27.74077 -27.65373 -27.10447 -25.75774 -23.90291 -23.32967 -21.79843 -21.46595 -20.41241 -19.23929 -18.00459 -17.70426 -17.18263 -16.96107 -16.74695 -16.04693 -15.64251 -15.56320 -15.33043 -15.02084 -14.66188 -14.55974 -14.48952 -13.69444 -13.61833 -13.46894 -13.35439 -13.10666 -12.97571 -12.96367 -12.78148 -12.70992 -12.63793 -12.54880 -12.39539 -12.25688 -12.01608 -11.85274 -11.78117 -11.71842 -11.35048 -10.90577 -10.63951 -10.45111 -10.39065 -10.06317 -9.55175 -9.37581 -8.04794 -6.14957 0.94337 1.10908 1.39247 1.43277 1.43654 1.52113 1.72633 2.11113 2.47312 2.88161 3.21009 3.73239 3.79470 3.84451 3.89330 3.94194 3.99198 4.15914 4.20784 4.45673 4.48582 4.50713 4.53213 4.59348 4.64499 4.76194 4.78735 4.79690 4.85015 4.90700 4.92141 4.96603 4.98581 5.02137 5.07604 5.17569 5.24535 5.28941 5.50812 5.60192 5.65416 5.67832 5.71059 5.73073 5.86441 5.97093 6.08626 6.14524 6.36574 6.47647 6.87683 7.50309 8.08524 8.96405 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.004923 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.178160 B = 5686.088331 C = 6867.206464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.201 4.201 3 C 0.134 3.866 4 N -0.464 5.464 5 C 0.328 3.672 6 N -0.442 5.442 7 C 0.062 3.938 8 C -0.117 4.117 9 C -0.152 4.152 10 C -0.149 4.149 11 C -0.107 4.107 12 C 0.105 3.895 13 N -0.335 5.335 14 N -0.340 5.340 15 C 0.223 3.777 16 C 0.143 3.857 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.513 4.513 20 H 0.047 0.953 21 C 0.031 3.969 22 N -0.901 5.901 23 Si 0.945 3.055 24 H -0.282 1.282 25 H -0.276 1.276 26 H -0.282 1.282 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.051 0.949 47 H 0.076 0.924 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.382 4.907 6.187 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.220 4.220 3 C 0.013 3.987 4 N -0.156 5.156 5 C -0.028 4.028 6 N -0.165 5.165 7 C -0.064 4.064 8 C -0.155 4.155 9 C -0.170 4.170 10 C -0.150 4.150 11 C -0.164 4.164 12 C -0.022 4.022 13 N -0.178 5.178 14 N -0.178 5.178 15 C -0.046 4.046 16 C 0.140 3.860 17 C -0.176 4.176 18 C -0.179 4.179 19 C -0.552 4.552 20 H 0.066 0.934 21 C -0.168 4.168 22 N -0.540 5.540 23 Si 0.772 3.228 24 H -0.208 1.208 25 H -0.200 1.200 26 H -0.208 1.208 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.631 5.101 6.759 20.465 hybrid contribution 1.382 -0.883 -0.109 1.643 sum -17.249 4.218 6.651 18.962 Atomic orbital electron populations 1.24137 0.94181 1.03911 0.94726 1.23021 0.97150 0.96887 1.04946 1.21242 0.91630 0.98566 0.87288 1.46442 1.09530 1.50379 1.09292 1.22595 0.93809 1.03289 0.83155 1.59578 1.10010 1.10916 1.36018 1.22470 0.96441 0.91476 0.96061 1.20968 0.98882 0.98178 0.97521 1.21808 1.01745 0.93926 0.99566 1.21481 1.00181 0.95842 0.97510 1.20785 1.00243 0.98460 0.96934 1.21038 1.02841 0.91529 0.86803 1.74628 0.97540 1.19716 1.25875 1.74008 1.23920 1.18885 1.01007 1.25736 0.81455 0.99318 0.98046 1.16787 0.91411 0.92780 0.85008 1.21745 0.98602 0.96481 1.00790 1.21849 0.98443 0.96807 1.00816 1.21128 0.96355 1.43220 0.94503 0.93446 1.25342 1.01017 0.95414 0.95044 1.69848 1.35619 1.47166 1.01344 0.85821 0.81065 0.78260 0.77640 1.20788 1.20046 1.20756 0.86315 0.86050 0.88623 0.86438 0.88177 0.85888 0.89934 0.88728 0.94921 0.88254 0.92372 0.93075 0.89639 0.91274 0.85132 0.90178 0.94222 0.96602 0.96979 0.93062 0.90525 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 13.83 67.78 0.94 -1.26 16 2 C -0.20 -4.93 8.65 25.65 0.22 -4.71 16 3 C 0.13 3.77 5.64 85.63 0.48 4.25 16 4 N -0.46 -17.31 2.79 -518.91 -1.45 -18.76 16 5 C 0.33 11.92 5.64 260.11 1.47 13.38 16 6 N -0.44 -11.65 5.06 -710.47 -3.60 -15.25 16 7 C 0.06 1.36 6.02 86.27 0.52 1.88 16 8 C -0.12 -3.11 5.53 29.75 0.16 -2.95 16 9 C -0.15 -4.15 8.62 26.74 0.23 -3.92 16 10 C -0.15 -3.77 4.87 -15.44 -0.08 -3.84 16 11 C -0.11 -2.34 10.01 71.24 0.71 -1.62 16 12 C 0.10 2.46 5.55 85.39 0.47 2.93 16 13 N -0.33 -14.87 9.09 -58.00 -0.53 -15.39 16 14 N -0.34 -17.58 11.00 -49.54 -0.54 -18.13 16 15 C 0.22 10.48 6.34 137.64 0.87 11.35 16 16 C 0.14 7.04 0.47 -53.67 -0.03 7.01 16 17 C -0.12 -5.46 8.10 71.98 0.58 -4.88 16 18 C -0.12 -5.50 7.74 71.98 0.56 -4.95 16 19 C -0.51 -29.07 7.91 25.60 0.20 -28.86 16 20 H 0.05 2.91 6.95 -2.91 -0.02 2.89 16 21 C 0.03 1.70 5.15 84.65 0.44 2.14 16 22 N -0.90 -48.29 9.39 21.45 0.20 -48.09 16 23 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 27 H 0.12 1.60 8.06 -2.91 -0.02 1.58 16 28 H 0.12 1.55 7.84 -2.91 -0.02 1.52 16 29 H 0.10 2.81 6.88 -2.91 -0.02 2.79 16 30 H 0.12 2.68 7.79 -2.39 -0.02 2.66 16 31 H 0.10 2.97 4.58 -2.39 -0.01 2.96 16 32 H 0.12 1.85 8.08 -2.39 -0.02 1.83 16 33 H 0.08 1.79 7.47 -2.39 -0.02 1.77 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.03 1.17 7.01 -2.39 -0.02 1.16 16 36 H 0.10 2.68 7.63 -2.91 -0.02 2.65 16 37 H 0.06 1.25 7.61 -2.38 -0.02 1.23 16 38 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.86 8.02 -2.38 -0.02 1.84 16 41 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 3.97 6.16 -2.39 -0.01 3.95 16 43 H 0.04 1.54 5.70 -2.38 -0.01 1.52 16 44 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.05 1.94 3.97 -2.39 -0.01 1.93 16 47 H 0.08 3.79 6.08 -2.39 -0.01 3.78 16 48 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -68.18 365.24 4.82 -63.36 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.95 Total: 19.22 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 7.76 Total: -14.04 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -5.92 Total: -115.61 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.18 4.82 -63.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338934700.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.922 kcal (2) G-P(sol) polarization free energy of solvation -68.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds