Wall clock time and date at job start Tue Mar 31 2020 11:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99589 * 2 1 4 4 N 1.46900 * 109.47318 * 124.99964 * 3 2 1 5 5 C 1.38577 * 111.00116 * 172.61014 * 4 3 2 6 6 N 1.31227 * 126.47231 * 106.77686 * 5 4 3 7 7 N 1.28530 * 109.85980 * 179.97438 * 6 5 4 8 8 C 1.30294 * 110.05508 * 0.02562 * 7 6 5 9 9 C 1.50702 * 126.34884 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47219 * 89.96685 * 9 8 7 11 11 C 1.52995 * 109.47299 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47486 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99604 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00010 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46734 * 60.00208 * 16 14 12 18 18 H 1.48500 * 109.46836 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46830 * 300.00395 * 16 14 12 20 20 N 1.36451 * 126.47710 * 286.46269 * 5 4 3 21 21 C 1.46502 * 127.13559 * 0.04067 * 20 5 4 22 22 C 1.50693 * 109.47378 * 97.20367 * 21 20 5 23 23 C 1.31001 * 120.00199 * 125.24248 * 22 21 20 24 24 C 1.46894 * 110.99816 * 296.56845 * 4 3 2 25 25 C 1.53001 * 117.49955 * 139.74583 * 24 4 3 26 26 C 1.52995 * 59.99953 * 252.50623 * 25 24 4 27 27 H 1.07998 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99671 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00246 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47464 * 4.99637 * 3 2 1 31 31 H 1.09002 * 109.46877 * 244.99998 * 3 2 1 32 32 H 1.08996 * 109.46862 * 209.97072 * 9 8 7 33 33 H 1.08996 * 109.46493 * 329.96918 * 9 8 7 34 34 H 1.09001 * 109.47161 * 300.00610 * 10 9 8 35 35 H 1.09004 * 109.46960 * 60.00499 * 10 9 8 36 36 H 1.09001 * 109.47495 * 300.00384 * 11 10 9 37 37 H 1.09000 * 109.47179 * 60.00179 * 11 10 9 38 38 H 0.96998 * 119.99748 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47340 * 217.20839 * 21 20 5 40 40 H 1.09002 * 109.47052 * 337.20030 * 21 20 5 41 41 H 1.08004 * 119.99737 * 305.23825 * 22 21 20 42 42 H 1.07995 * 119.99913 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99920 * 0.02562 * 23 22 21 44 44 H 1.09002 * 115.55205 * 285.44724 * 24 4 3 45 45 H 1.09001 * 117.49997 * 0.02562 * 25 24 4 46 46 H 1.09004 * 117.49743 * 145.01545 * 25 24 4 47 47 H 1.09000 * 117.49997 * 252.50872 * 26 25 24 48 48 H 1.09000 * 117.49528 * 107.48981 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9963 1.3322 1.1345 5 6 3.8219 2.4433 1.0723 6 7 3.7531 3.5099 1.8337 7 7 4.6731 4.3437 1.5014 8 6 5.3772 3.8629 0.5162 9 6 6.5457 4.5348 -0.1579 10 6 7.8404 4.1457 0.5584 11 6 9.0266 4.8283 -0.1255 12 6 10.3020 4.4447 0.5797 13 1 10.2697 3.7800 1.4303 14 6 11.5100 4.9421 0.1389 15 7 11.5491 5.7519 -0.8967 16 14 13.0908 4.4671 1.0134 17 1 13.2662 2.9937 0.9533 18 1 14.2421 5.1296 0.3494 19 1 13.0208 4.8998 2.4323 20 7 4.8638 2.6326 0.2117 21 6 5.3325 1.7108 -0.8260 22 6 4.7453 2.1101 -2.1551 23 6 5.5323 2.3339 -3.1782 24 6 2.2728 1.2847 2.4121 25 6 2.8636 0.4190 3.5267 26 6 1.5995 -0.0350 2.7941 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 6.5967 4.2164 -1.1991 33 1 6.4173 5.6163 -0.1145 34 1 7.7893 4.4640 1.5997 35 1 7.9688 3.0641 0.5150 36 1 9.0779 4.5104 -1.1668 37 1 8.8981 5.9099 -0.0817 38 1 12.3989 6.1022 -1.2066 39 1 6.4203 1.7503 -0.8827 40 1 5.0182 0.6965 -0.5798 41 1 3.6756 2.2116 -2.2643 42 1 5.1114 2.6197 -4.1308 43 1 6.6019 2.2319 -3.0692 44 1 1.7720 2.2080 2.7034 45 1 3.7893 -0.1149 3.3123 46 1 2.7516 0.7729 4.5517 47 1 0.6559 0.0201 3.3370 48 1 1.6934 -0.8680 2.0975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339020770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:37 Heat of formation + Delta-G solvation = 148.689400 kcal Electronic energy + Delta-G solvation = -26515.279666 eV Core-core repulsion = 22994.819015 eV Total energy + Delta-G solvation = -3520.460651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.84220 -39.06481 -36.38473 -35.21281 -34.73527 -33.56424 -32.78300 -32.13352 -29.54582 -27.39862 -26.69547 -25.64495 -23.68172 -22.87808 -22.42826 -21.16479 -20.42652 -20.38286 -19.91596 -19.86953 -17.49516 -16.67104 -16.31982 -16.19303 -15.92706 -15.36512 -14.78993 -14.72071 -14.51488 -14.18753 -14.07485 -13.86023 -13.65255 -12.98218 -12.56779 -12.49359 -12.28164 -12.00227 -11.79709 -11.66934 -11.54037 -11.51357 -11.30916 -11.01545 -10.84527 -10.80447 -10.58057 -10.51611 -10.32173 -10.08044 -9.84989 -9.70024 -9.69217 -9.57085 -9.36904 -9.12888 -8.35866 -8.23680 -6.01303 -4.03511 1.62618 1.79823 1.99714 2.49488 3.05601 3.33194 3.37522 3.40589 3.49572 3.57939 4.37713 4.45094 4.49648 4.56721 4.63593 4.68870 4.75080 4.77884 4.85064 4.97428 5.02360 5.16389 5.24186 5.32561 5.34990 5.39979 5.43312 5.50774 5.60044 5.68936 5.83285 5.88058 5.90239 5.97160 6.01308 6.11685 6.19110 6.25444 6.27080 6.35616 6.53963 6.64227 6.70638 6.77471 7.03990 7.23966 7.64119 7.77498 7.97988 8.40603 8.97960 9.02824 9.60646 11.09912 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002884 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.588659 B = 9705.044155 C =10380.932331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.083 3.917 4 N -0.426 5.426 5 C 0.340 3.660 6 N -0.315 5.315 7 N -0.291 5.291 8 C 0.208 3.792 9 C -0.036 4.036 10 C -0.102 4.102 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.469 5.469 21 C 0.136 3.864 22 C -0.192 4.192 23 C -0.149 4.149 24 C 0.022 3.978 25 C -0.159 4.159 26 C -0.161 4.161 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.016 0.984 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.192 -13.816 -1.978 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.159 4.159 3 C -0.043 4.043 4 N -0.150 5.150 5 C -0.016 4.016 6 N -0.159 5.159 7 N -0.130 5.130 8 C -0.059 4.059 9 C -0.075 4.075 10 C -0.141 4.141 11 C -0.013 4.013 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.163 5.163 21 C 0.014 3.986 22 C -0.211 4.211 23 C -0.186 4.186 24 C -0.086 4.086 25 C -0.197 4.197 26 C -0.199 4.199 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -22.256 -13.188 -1.033 25.890 hybrid contribution 0.942 -0.575 -0.587 1.251 sum -21.313 -13.763 -1.621 25.423 Atomic orbital electron populations 1.23852 0.95664 1.02093 1.00450 1.22683 0.95608 0.97701 0.99949 1.21444 0.93958 0.96168 0.92720 1.58310 1.20071 1.32825 1.03778 1.22229 0.92458 0.93244 0.93709 1.74531 1.18546 0.98805 1.24025 1.74037 1.04441 1.22904 1.11637 1.25274 0.99769 0.83784 0.97116 1.20354 0.88686 1.00342 0.98153 1.21652 0.92671 0.99943 0.99842 1.19085 0.90767 0.95928 0.95521 1.21185 0.91580 1.28658 1.14496 0.92793 1.25002 0.99140 0.95101 0.95085 1.69946 1.26007 1.32462 1.25049 0.86671 0.82851 0.78635 0.79943 1.20299 1.21271 1.20179 1.46221 1.24652 1.16840 1.28601 1.20989 1.00877 0.92885 0.83892 1.23048 1.00059 1.03522 0.94436 1.24092 1.00600 0.95812 0.98118 1.22183 1.01716 0.95915 0.88821 1.23043 0.97792 1.02453 0.96377 1.23211 0.96893 0.96921 1.02867 0.88620 0.87976 0.86590 0.92993 0.89453 0.90425 0.88578 0.92429 0.93669 0.96548 0.96174 0.92930 0.87657 0.87638 0.87133 0.87585 0.87264 0.87518 0.88338 0.88329 0.88379 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.05 29.01 0.41 -0.70 16 2 C -0.14 -1.00 6.61 -36.03 -0.24 -1.24 16 3 C 0.08 0.78 5.34 -4.97 -0.03 0.75 16 4 N -0.43 -4.94 4.62 -168.31 -0.78 -5.72 16 5 C 0.34 5.09 6.91 -318.87 -2.20 2.89 16 6 N -0.32 -5.70 11.26 30.31 0.34 -5.36 16 7 N -0.29 -5.68 12.18 32.99 0.40 -5.28 16 8 C 0.21 3.59 7.32 -154.01 -1.13 2.46 16 9 C -0.04 -0.61 5.56 -27.88 -0.16 -0.76 16 10 C -0.10 -2.09 5.13 -26.74 -0.14 -2.23 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 N -0.47 -6.82 2.79 -115.37 -0.32 -7.14 16 21 C 0.14 1.51 5.81 -5.20 -0.03 1.48 16 22 C -0.19 -1.84 9.29 -36.03 -0.33 -2.17 16 23 C -0.15 -1.33 14.32 29.01 0.42 -0.92 16 24 C 0.02 0.24 4.52 -67.72 -0.31 -0.07 16 25 C -0.16 -1.58 10.46 -26.73 -0.28 -1.86 16 26 C -0.16 -1.29 8.84 -26.74 -0.24 -1.53 16 27 H 0.10 0.59 7.84 -52.49 -0.41 0.18 16 28 H 0.10 0.49 8.06 -52.48 -0.42 0.06 16 29 H 0.12 0.76 7.74 -52.49 -0.41 0.36 16 30 H 0.05 0.53 7.79 -51.93 -0.40 0.12 16 31 H 0.09 0.79 5.26 -51.93 -0.27 0.52 16 32 H 0.08 1.19 7.98 -51.93 -0.41 0.78 16 33 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.11 1.21 7.76 -51.93 -0.40 0.80 16 40 H 0.11 1.03 8.07 -51.93 -0.42 0.61 16 41 H 0.11 1.00 6.49 -52.48 -0.34 0.66 16 42 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.11 1.02 7.84 -52.49 -0.41 0.61 16 44 H 0.11 1.31 7.81 -51.93 -0.41 0.91 16 45 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.77 6.23 -51.93 -0.32 0.44 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -32.49 396.81 -11.45 -43.94 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.98 Total: -0.41 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -4.80 Total: -16.82 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.38 Total: -49.29 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.49 -11.45 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339020770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.630 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds