Wall clock time and date at job start Tue Mar 31 2020 11:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99589 * 2 1 4 4 N 1.46900 * 109.47318 * 124.99964 * 3 2 1 5 5 C 1.38577 * 111.00116 * 172.61014 * 4 3 2 6 6 N 1.31227 * 126.47231 * 106.77686 * 5 4 3 7 7 N 1.28530 * 109.85980 * 179.97438 * 6 5 4 8 8 C 1.30294 * 110.05508 * 0.02562 * 7 6 5 9 9 C 1.50702 * 126.34884 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47219 * 89.96685 * 9 8 7 11 11 C 1.52995 * 109.47299 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47486 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99604 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00010 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46734 * 60.00208 * 16 14 12 18 18 H 1.48500 * 109.46836 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46830 * 300.00395 * 16 14 12 20 20 N 1.36451 * 126.47710 * 286.46269 * 5 4 3 21 21 C 1.46502 * 127.13559 * 0.04067 * 20 5 4 22 22 C 1.50693 * 109.47378 * 97.20367 * 21 20 5 23 23 C 1.31001 * 120.00199 * 125.24248 * 22 21 20 24 24 C 1.46894 * 110.99816 * 296.56845 * 4 3 2 25 25 C 1.53001 * 117.49955 * 139.74583 * 24 4 3 26 26 C 1.52995 * 59.99953 * 252.50623 * 25 24 4 27 27 H 1.07998 * 120.00268 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99671 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00246 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47464 * 4.99637 * 3 2 1 31 31 H 1.09002 * 109.46877 * 244.99998 * 3 2 1 32 32 H 1.08996 * 109.46862 * 209.97072 * 9 8 7 33 33 H 1.08996 * 109.46493 * 329.96918 * 9 8 7 34 34 H 1.09001 * 109.47161 * 300.00610 * 10 9 8 35 35 H 1.09004 * 109.46960 * 60.00499 * 10 9 8 36 36 H 1.09001 * 109.47495 * 300.00384 * 11 10 9 37 37 H 1.09000 * 109.47179 * 60.00179 * 11 10 9 38 38 H 0.96998 * 119.99748 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47340 * 217.20839 * 21 20 5 40 40 H 1.09002 * 109.47052 * 337.20030 * 21 20 5 41 41 H 1.08004 * 119.99737 * 305.23825 * 22 21 20 42 42 H 1.07995 * 119.99913 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.99920 * 0.02562 * 23 22 21 44 44 H 1.09002 * 115.55205 * 285.44724 * 24 4 3 45 45 H 1.09001 * 117.49997 * 0.02562 * 25 24 4 46 46 H 1.09004 * 117.49743 * 145.01545 * 25 24 4 47 47 H 1.09000 * 117.49997 * 252.50872 * 26 25 24 48 48 H 1.09000 * 117.49528 * 107.48981 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9963 1.3322 1.1345 5 6 3.8219 2.4433 1.0723 6 7 3.7531 3.5099 1.8337 7 7 4.6731 4.3437 1.5014 8 6 5.3772 3.8629 0.5162 9 6 6.5457 4.5348 -0.1579 10 6 7.8404 4.1457 0.5584 11 6 9.0266 4.8283 -0.1255 12 6 10.3020 4.4447 0.5797 13 1 10.2697 3.7800 1.4303 14 6 11.5100 4.9421 0.1389 15 7 11.5491 5.7519 -0.8967 16 14 13.0908 4.4671 1.0134 17 1 13.2662 2.9937 0.9533 18 1 14.2421 5.1296 0.3494 19 1 13.0208 4.8998 2.4323 20 7 4.8638 2.6326 0.2117 21 6 5.3325 1.7108 -0.8260 22 6 4.7453 2.1101 -2.1551 23 6 5.5323 2.3339 -3.1782 24 6 2.2728 1.2847 2.4121 25 6 2.8636 0.4190 3.5267 26 6 1.5995 -0.0350 2.7941 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6212 1.4027 -0.9314 32 1 6.5967 4.2164 -1.1991 33 1 6.4173 5.6163 -0.1145 34 1 7.7893 4.4640 1.5997 35 1 7.9688 3.0641 0.5150 36 1 9.0779 4.5104 -1.1668 37 1 8.8981 5.9099 -0.0817 38 1 12.3989 6.1022 -1.2066 39 1 6.4203 1.7503 -0.8827 40 1 5.0182 0.6965 -0.5798 41 1 3.6756 2.2116 -2.2643 42 1 5.1114 2.6197 -4.1308 43 1 6.6019 2.2319 -3.0692 44 1 1.7720 2.2080 2.7034 45 1 3.7893 -0.1149 3.3123 46 1 2.7516 0.7729 4.5517 47 1 0.6559 0.0201 3.3370 48 1 1.6934 -0.8680 2.0975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339020770.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:36 Heat of formation + Delta-G solvation = 133.798069 kcal Electronic energy + Delta-G solvation = -26515.925403 eV Core-core repulsion = 22994.819015 eV Total energy + Delta-G solvation = -3521.106387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.07988 -39.91062 -37.42063 -36.60030 -35.75423 -34.66326 -34.14085 -33.46434 -31.06315 -28.79876 -27.82222 -26.56757 -25.47048 -23.87993 -23.18943 -22.51404 -21.89052 -21.10109 -21.02026 -20.68245 -18.64154 -18.29098 -17.60274 -17.35897 -16.77949 -16.50746 -16.20742 -15.79823 -15.57284 -15.49007 -15.16442 -14.90089 -14.56363 -14.26602 -13.91155 -13.71478 -13.47055 -13.20421 -13.17496 -12.70066 -12.67226 -12.64243 -12.55951 -12.44609 -12.35878 -12.10691 -11.84564 -11.64521 -11.48907 -11.41122 -11.27028 -11.18165 -11.15432 -10.63000 -10.56039 -10.53018 -10.20252 -9.42819 -8.19037 -6.29091 0.64223 0.84580 1.26593 1.40369 1.42731 1.50606 1.59331 1.76128 2.41626 2.56926 2.81775 3.14367 3.32126 3.62902 3.69111 3.76199 3.85313 3.90705 4.00877 4.03213 4.10088 4.20347 4.27267 4.32182 4.35270 4.49024 4.54757 4.59425 4.64232 4.77593 4.83171 4.91150 4.92888 5.01724 5.04911 5.06783 5.08508 5.16259 5.26156 5.40849 5.51231 5.52869 5.58840 5.63294 5.70051 5.73960 5.85675 5.90335 6.14124 6.26331 6.86138 7.39501 7.69240 8.92156 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002884 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.588659 B = 9705.044155 C =10380.932331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.151 4.151 3 C 0.084 3.916 4 N -0.419 5.419 5 C 0.355 3.645 6 N -0.352 5.352 7 N -0.328 5.328 8 C 0.199 3.801 9 C -0.022 4.022 10 C -0.084 4.084 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.272 1.272 20 N -0.464 5.464 21 C 0.131 3.869 22 C -0.197 4.197 23 C -0.142 4.142 24 C -0.002 4.002 25 C -0.170 4.170 26 C -0.125 4.125 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.127 0.873 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.007 0.993 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.117 0.883 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.173 -16.288 -2.463 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C -0.042 4.042 4 N -0.143 5.143 5 C -0.003 4.003 6 N -0.195 5.195 7 N -0.167 5.167 8 C -0.070 4.070 9 C -0.061 4.061 10 C -0.123 4.123 11 C -0.007 4.007 12 C -0.583 4.583 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.783 3.217 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.197 1.197 20 N -0.158 5.158 21 C 0.010 3.990 22 C -0.216 4.216 23 C -0.180 4.180 24 C -0.110 4.110 25 C -0.208 4.208 26 C -0.163 4.163 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.059 0.941 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.135 0.865 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.252 -15.681 -1.527 28.087 hybrid contribution 1.166 0.152 -0.460 1.262 sum -22.086 -15.529 -1.987 27.072 Atomic orbital electron populations 1.24027 0.95292 1.02938 0.98266 1.22576 0.95820 0.96670 1.01838 1.21521 0.93456 0.97391 0.91790 1.58547 1.20412 1.30365 1.04945 1.22634 0.92343 0.93085 0.92201 1.74448 1.19185 1.00039 1.25868 1.73933 1.05487 1.24423 1.12811 1.25044 0.99870 0.84936 0.97138 1.20113 0.87114 1.00187 0.98731 1.21345 0.92707 0.99675 0.98565 1.18954 0.91853 0.94705 0.95195 1.21611 0.93080 1.28812 1.14773 0.92854 1.25867 1.02704 0.94952 0.95788 1.70061 1.27028 1.33381 1.26370 0.85606 0.78549 0.78838 0.78711 1.19103 1.20613 1.19747 1.46356 1.24114 1.16333 1.28968 1.21254 1.00816 0.92991 0.83908 1.22973 1.00475 1.04499 0.93635 1.24247 1.00400 0.94591 0.98725 1.22212 1.03115 0.96721 0.88960 1.23082 0.98685 1.02616 0.96380 1.23299 0.96578 0.94946 1.01443 0.88916 0.85957 0.85526 0.94099 0.89204 0.88412 0.89036 0.94183 0.92994 0.97439 0.98583 0.92699 0.87975 0.86049 0.86392 0.85855 0.87685 0.89416 0.89190 0.88130 0.86476 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.05 67.78 0.95 -0.57 16 2 C -0.15 -1.74 6.61 25.64 0.17 -1.57 16 3 C 0.08 1.46 5.34 85.56 0.46 1.91 16 4 N -0.42 -9.36 4.62 -686.40 -3.17 -12.53 16 5 C 0.35 10.64 6.91 260.11 1.80 12.43 16 6 N -0.35 -13.08 11.26 -58.00 -0.65 -13.73 16 7 N -0.33 -13.18 12.18 -49.53 -0.60 -13.79 16 8 C 0.20 6.96 7.32 137.64 1.01 7.97 16 9 C -0.02 -0.75 5.56 29.85 0.17 -0.59 16 10 C -0.08 -3.50 5.13 30.59 0.16 -3.35 16 11 C 0.03 1.54 4.97 29.85 0.15 1.69 16 12 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 13 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 14 C 0.01 0.29 5.46 84.65 0.46 0.75 16 15 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 16 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 N -0.46 -13.36 2.79 -518.91 -1.45 -14.81 16 21 C 0.13 2.77 5.81 85.63 0.50 3.26 16 22 C -0.20 -3.46 9.29 25.64 0.24 -3.22 16 23 C -0.14 -2.29 14.32 67.78 0.97 -1.32 16 24 C 0.00 -0.05 4.52 44.92 0.20 0.16 16 25 C -0.17 -3.24 10.46 30.59 0.32 -2.92 16 26 C -0.13 -1.70 8.84 30.59 0.27 -1.43 16 27 H 0.09 0.92 7.84 -2.91 -0.02 0.90 16 28 H 0.12 0.67 8.06 -2.91 -0.02 0.65 16 29 H 0.13 1.24 7.74 -2.91 -0.02 1.22 16 30 H 0.04 0.80 7.79 -2.39 -0.02 0.78 16 31 H 0.09 1.49 5.26 -2.39 -0.01 1.48 16 32 H 0.10 2.95 7.98 -2.39 -0.02 2.94 16 33 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 38 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.10 2.24 7.76 -2.39 -0.02 2.22 16 40 H 0.12 2.15 8.07 -2.39 -0.02 2.13 16 41 H 0.12 1.92 6.49 -2.91 -0.02 1.90 16 42 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.10 1.80 7.84 -2.91 -0.02 1.78 16 44 H 0.09 2.21 7.81 -2.39 -0.02 2.19 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.12 1.32 6.23 -2.39 -0.01 1.30 16 Total: -1.00 -71.23 396.81 5.40 -65.82 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.92 Total: 15.51 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 8.05 Total: -17.48 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -5.59 Total: -110.12 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.23 5.40 -65.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339020770.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.619 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds