Wall clock time and date at job start Tue Mar 31 2020 11:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00651 * 2 1 4 4 N 1.46493 * 109.47155 * 125.21848 * 3 2 1 5 5 C 1.36743 * 127.14091 * 270.84609 * 4 3 2 6 6 C 1.50701 * 126.34333 * 0.02562 * 5 4 3 7 7 H 1.08994 * 109.47317 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46640 * 120.00213 * 6 5 4 9 9 C 1.53003 * 109.47168 * 239.99812 * 6 5 4 10 10 C 1.50693 * 109.46894 * 175.00372 * 9 6 5 11 11 H 1.07993 * 120.00488 * 359.97438 * 10 9 6 12 12 C 1.37885 * 119.99870 * 180.02562 * 10 9 6 13 13 N 1.31511 * 119.99933 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99846 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47024 * 89.99834 * 14 12 10 16 16 H 1.48500 * 109.47156 * 209.99908 * 14 12 10 17 17 H 1.48503 * 109.46867 * 329.99812 * 14 12 10 18 18 N 1.30296 * 107.30841 * 180.02562 * 5 4 3 19 19 N 1.28531 * 110.04903 * 359.76914 * 18 5 4 20 20 C 1.31210 * 109.86377 * 0.38640 * 19 18 5 21 21 N 1.38584 * 126.47638 * 179.88750 * 20 19 18 22 22 C 1.46829 * 111.00106 * 61.10832 * 21 20 19 23 23 C 1.53293 * 109.40130 * 170.25074 * 22 21 20 24 24 C 1.51443 * 108.24289 * 53.79316 * 23 22 21 25 25 C 1.30998 * 121.11064 * 130.95143 * 24 23 22 26 26 C 1.51435 * 117.77568 * 310.97323 * 24 23 22 27 27 C 1.46826 * 110.99739 * 296.42595 * 21 20 19 28 28 H 1.08000 * 119.99085 * 0.02562 * 1 2 3 29 29 H 1.07990 * 119.99959 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99951 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46729 * 5.22143 * 3 2 1 32 32 H 1.08997 * 109.47056 * 245.22329 * 3 2 1 33 33 H 1.09000 * 109.47257 * 299.99407 * 8 6 5 34 34 H 1.08996 * 109.47894 * 60.00134 * 8 6 5 35 35 H 1.09005 * 109.47214 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.46876 * 295.00155 * 9 6 5 37 37 H 1.08993 * 109.46734 * 54.99880 * 9 6 5 38 38 H 0.97003 * 119.99777 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.48075 * 290.23219 * 22 21 20 40 40 H 1.08999 * 109.47973 * 50.27381 * 22 21 20 41 41 H 1.09006 * 109.70772 * 294.11065 * 23 22 21 42 42 H 1.08999 * 109.71345 * 173.48357 * 23 22 21 43 43 H 1.07990 * 120.00052 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.99815 * 0.02562 * 25 24 23 45 45 H 1.08991 * 109.71173 * 289.33645 * 26 24 23 46 46 H 1.08998 * 109.73800 * 168.73305 * 26 24 23 47 47 H 1.08998 * 109.48450 * 309.73023 * 27 21 20 48 48 H 1.09008 * 109.48692 * 69.75668 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9976 1.3296 1.1283 5 6 2.7480 1.7740 2.3972 6 6 1.4462 2.3371 2.9063 7 1 0.7119 2.3403 2.1008 8 6 0.9332 1.4728 4.0599 9 6 1.6680 3.7680 3.4006 10 6 0.3458 4.3737 3.7952 11 1 -0.5620 3.7961 3.7024 12 6 0.2948 5.6658 4.2739 13 7 -0.8591 6.1946 4.6178 14 14 1.8647 6.6656 4.4325 15 1 2.1090 7.4072 3.1694 16 1 1.7266 7.6295 5.5537 17 1 3.0066 5.7548 4.7006 18 7 3.8443 1.6204 3.0844 19 7 4.7610 1.1086 2.3431 20 6 4.2975 0.9142 1.1311 21 7 4.9944 0.3820 0.0579 22 6 5.4380 -0.9877 0.3458 23 6 5.9850 -1.6258 -0.9362 24 6 7.0491 -0.7105 -1.5047 25 6 8.2209 -1.1746 -1.8619 26 6 6.7135 0.7595 -1.6460 27 6 6.1202 1.2459 -0.3188 28 1 -0.5398 0.9354 -0.0004 29 1 -0.5399 -0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3590 2.1315 0.0935 32 1 2.6183 1.4043 -0.9330 33 1 0.7751 0.4534 3.7078 34 1 1.6673 1.4692 4.8656 35 1 -0.0087 1.8798 4.4279 36 1 2.3337 3.7551 4.2636 37 1 2.1166 4.3619 2.6044 38 1 -0.8949 7.1034 4.9549 39 1 6.2215 -0.9645 1.1033 40 1 4.5949 -1.5734 0.7123 41 1 5.1787 -1.7461 -1.6599 42 1 6.4210 -2.5979 -0.7059 43 1 8.9667 -0.5057 -2.2649 44 1 8.4410 -2.2265 -1.7533 45 1 5.9856 0.8951 -2.4457 46 1 7.6182 1.3234 -1.8729 47 1 5.7694 2.2717 -0.4317 48 1 6.8845 1.2065 0.4575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339498533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:27 Heat of formation + Delta-G solvation = 114.840759 kcal Electronic energy + Delta-G solvation = -27055.408393 eV Core-core repulsion = 23533.479955 eV Total energy + Delta-G solvation = -3521.928438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73842 -39.20638 -36.18502 -35.54889 -34.60818 -32.64723 -32.17470 -31.49664 -29.54901 -27.81946 -27.15460 -26.63722 -24.00200 -23.80130 -22.83019 -21.61549 -21.10262 -19.99945 -19.26015 -18.37184 -17.37478 -16.88577 -16.25109 -16.18345 -15.18831 -15.08325 -14.80481 -14.55306 -14.34290 -14.02988 -13.84216 -13.63166 -13.48800 -13.32472 -12.78047 -12.66155 -12.38777 -12.25060 -11.99358 -11.65534 -11.60869 -11.47837 -11.23668 -11.11816 -11.05619 -10.83557 -10.74778 -10.40078 -10.13216 -10.06832 -9.86442 -9.75425 -9.67283 -9.41726 -9.19087 -8.82132 -8.57642 -8.53549 -6.06866 -4.05373 1.80711 1.93817 2.01049 2.58671 3.17379 3.32056 3.40598 3.49537 3.66067 4.37210 4.41103 4.45949 4.61560 4.70751 4.81029 4.85017 4.89359 5.02941 5.04783 5.17365 5.18341 5.27396 5.34776 5.38936 5.41011 5.49973 5.52868 5.54294 5.67624 5.69092 5.71526 5.84954 5.94030 6.01544 6.15265 6.22779 6.29104 6.36980 6.48355 6.54314 6.57032 6.63380 6.70351 6.78159 6.99801 7.16054 7.35976 7.40842 7.73835 8.47344 8.95605 9.07451 9.55756 11.05693 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.003527 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.707973 B = 7936.879784 C = 8766.378917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.177 4.177 3 C 0.140 3.860 4 N -0.463 5.463 5 C 0.218 3.782 6 C 0.009 3.991 7 H 0.077 0.923 8 C -0.126 4.126 9 C 0.001 3.999 10 C -0.518 4.518 11 H 0.077 0.923 12 C 0.072 3.928 13 N -0.901 5.901 14 Si 0.872 3.128 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.261 1.261 18 N -0.289 5.289 19 N -0.312 5.312 20 C 0.320 3.680 21 N -0.461 5.461 22 C 0.073 3.927 23 C -0.081 4.081 24 C -0.120 4.120 25 C -0.196 4.196 26 C -0.081 4.081 27 C 0.070 3.930 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.008 0.992 38 H 0.263 0.737 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.973 -15.913 -15.871 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.196 4.196 3 C 0.017 3.983 4 N -0.155 5.155 5 C -0.049 4.049 6 C -0.012 4.012 7 H 0.096 0.904 8 C -0.184 4.184 9 C -0.038 4.038 10 C -0.556 4.556 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.540 5.540 14 Si 0.699 3.301 15 H -0.205 1.205 16 H -0.213 1.213 17 H -0.186 1.186 18 N -0.129 5.129 19 N -0.156 5.156 20 C -0.036 4.036 21 N -0.186 5.186 22 C -0.054 4.054 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.233 4.233 26 C -0.118 4.118 27 C -0.057 4.057 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.558 -15.743 -15.043 24.652 hybrid contribution 0.421 0.629 -0.520 0.919 sum 11.979 -15.114 -15.563 24.782 Atomic orbital electron populations 1.24011 0.95544 1.02790 0.97307 1.22988 0.96152 0.97812 1.02665 1.20915 0.91770 0.97423 0.88160 1.46413 1.10301 1.47328 1.11435 1.25668 0.99845 0.99064 0.80366 1.19758 0.85968 0.97499 0.98007 0.90428 1.21670 1.02720 0.96652 0.97364 1.19600 0.98551 0.89088 0.96528 1.21010 0.92613 0.98688 1.43287 0.90534 1.24935 0.95807 0.97597 0.94665 1.69895 1.24480 1.15348 1.44241 0.86884 0.84907 0.80399 0.77901 1.20452 1.21260 1.18562 1.74061 0.97114 1.16641 1.25043 1.74543 1.24195 1.16918 0.99904 1.22111 0.84700 1.04366 0.92408 1.58329 1.25879 1.03037 1.31399 1.22101 0.99861 0.86550 0.96890 1.20911 0.97359 0.97018 0.96522 1.21970 0.95642 0.95823 0.98581 1.23606 0.96355 1.01045 1.02280 1.20907 1.01064 0.92663 0.97176 1.22142 0.90889 0.95946 0.96717 0.87620 0.87791 0.87067 0.88034 0.87736 0.94712 0.92158 0.90151 0.95010 0.97323 0.92675 0.92771 0.90518 0.89972 0.90375 0.88392 0.88410 0.89950 0.90325 0.90346 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 14.32 29.01 0.42 -1.12 16 2 C -0.18 -1.89 9.85 -36.03 -0.35 -2.25 16 3 C 0.14 1.69 6.31 -5.20 -0.03 1.66 16 4 N -0.46 -7.33 2.79 -115.37 -0.32 -7.65 16 5 C 0.22 4.16 6.58 -154.01 -1.01 3.14 16 6 C 0.01 0.17 2.70 -91.77 -0.25 -0.08 16 7 H 0.08 1.42 6.96 -51.93 -0.36 1.06 16 8 C -0.13 -2.36 8.98 37.16 0.33 -2.03 16 9 C 0.00 0.02 3.50 -27.89 -0.10 -0.08 16 10 C -0.52 -14.11 8.96 -34.44 -0.31 -14.42 16 11 H 0.08 2.18 7.30 -52.49 -0.38 1.79 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 14 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 18 N -0.29 -6.12 12.18 32.99 0.40 -5.72 16 19 N -0.31 -6.01 12.19 30.31 0.37 -5.64 16 20 C 0.32 5.10 6.35 -318.87 -2.03 3.07 16 21 N -0.46 -5.64 4.59 -174.26 -0.80 -6.44 16 22 C 0.07 0.79 5.42 -3.71 -0.02 0.77 16 23 C -0.08 -0.65 6.21 -27.37 -0.17 -0.82 16 24 C -0.12 -0.99 5.42 -100.34 -0.54 -1.54 16 25 C -0.20 -1.44 14.01 29.02 0.41 -1.03 16 26 C -0.08 -0.68 6.21 -27.37 -0.17 -0.84 16 27 C 0.07 0.79 5.44 -3.71 -0.02 0.77 16 28 H 0.11 1.02 7.84 -52.49 -0.41 0.61 16 29 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 30 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.10 1.22 6.92 -51.92 -0.36 0.87 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 36 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 37 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 43 H 0.10 0.64 7.95 -52.49 -0.42 0.22 16 44 H 0.10 0.63 7.95 -52.48 -0.42 0.21 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.57 7.93 -51.93 -0.41 0.15 16 47 H 0.08 0.92 8.06 -51.93 -0.42 0.51 16 48 H 0.05 0.68 8.10 -51.92 -0.42 0.26 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -32.26 389.60 -10.43 -42.69 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.11 Total: -1.17 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -3.95 Total: -12.85 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.42 Total: -51.82 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.26 -10.43 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339498533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.531 kcal (2) G-P(sol) polarization free energy of solvation -32.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds