Wall clock time and date at job start Tue Mar 31 2020 11:53:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50700 * 120.00651 * 2 1
4 4 N 1.46493 * 109.47155 * 125.21848 * 3 2 1
5 5 C 1.36743 * 127.14091 * 270.84609 * 4 3 2
6 6 C 1.50701 * 126.34333 * 0.02562 * 5 4 3
7 7 H 1.08994 * 109.47317 * 0.02562 * 6 5 4
8 8 C 1.52998 * 109.46640 * 120.00213 * 6 5 4
9 9 C 1.53003 * 109.47168 * 239.99812 * 6 5 4
10 10 C 1.50693 * 109.46894 * 175.00372 * 9 6 5
11 11 H 1.07993 * 120.00488 * 359.97438 * 10 9 6
12 12 C 1.37885 * 119.99870 * 180.02562 * 10 9 6
13 13 N 1.31511 * 119.99933 * 179.97438 * 12 10 9
14 14 Si 1.86800 * 119.99846 * 0.02562 * 12 10 9
15 15 H 1.48498 * 109.47024 * 89.99834 * 14 12 10
16 16 H 1.48500 * 109.47156 * 209.99908 * 14 12 10
17 17 H 1.48503 * 109.46867 * 329.99812 * 14 12 10
18 18 N 1.30296 * 107.30841 * 180.02562 * 5 4 3
19 19 N 1.28531 * 110.04903 * 359.76914 * 18 5 4
20 20 C 1.31210 * 109.86377 * 0.38640 * 19 18 5
21 21 N 1.38584 * 126.47638 * 179.88750 * 20 19 18
22 22 C 1.46829 * 111.00106 * 61.10832 * 21 20 19
23 23 C 1.53293 * 109.40130 * 170.25074 * 22 21 20
24 24 C 1.51443 * 108.24289 * 53.79316 * 23 22 21
25 25 C 1.30998 * 121.11064 * 130.95143 * 24 23 22
26 26 C 1.51435 * 117.77568 * 310.97323 * 24 23 22
27 27 C 1.46826 * 110.99739 * 296.42595 * 21 20 19
28 28 H 1.08000 * 119.99085 * 0.02562 * 1 2 3
29 29 H 1.07990 * 119.99959 * 180.02562 * 1 2 3
30 30 H 1.08003 * 119.99951 * 180.02562 * 2 1 3
31 31 H 1.09008 * 109.46729 * 5.22143 * 3 2 1
32 32 H 1.08997 * 109.47056 * 245.22329 * 3 2 1
33 33 H 1.09000 * 109.47257 * 299.99407 * 8 6 5
34 34 H 1.08996 * 109.47894 * 60.00134 * 8 6 5
35 35 H 1.09005 * 109.47214 * 180.02562 * 8 6 5
36 36 H 1.09001 * 109.46876 * 295.00155 * 9 6 5
37 37 H 1.08993 * 109.46734 * 54.99880 * 9 6 5
38 38 H 0.97003 * 119.99777 * 179.97438 * 13 12 10
39 39 H 1.09002 * 109.48075 * 290.23219 * 22 21 20
40 40 H 1.08999 * 109.47973 * 50.27381 * 22 21 20
41 41 H 1.09006 * 109.70772 * 294.11065 * 23 22 21
42 42 H 1.08999 * 109.71345 * 173.48357 * 23 22 21
43 43 H 1.07990 * 120.00052 * 180.02562 * 25 24 23
44 44 H 1.08007 * 119.99815 * 0.02562 * 25 24 23
45 45 H 1.08991 * 109.71173 * 289.33645 * 26 24 23
46 46 H 1.08998 * 109.73800 * 168.73305 * 26 24 23
47 47 H 1.08998 * 109.48450 * 309.73023 * 27 21 20
48 48 H 1.09008 * 109.48692 * 69.75668 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0637 1.3050 0.0000
4 7 2.9976 1.3296 1.1283
5 6 2.7480 1.7740 2.3972
6 6 1.4462 2.3371 2.9063
7 1 0.7119 2.3403 2.1008
8 6 0.9332 1.4728 4.0599
9 6 1.6680 3.7680 3.4006
10 6 0.3458 4.3737 3.7952
11 1 -0.5620 3.7961 3.7024
12 6 0.2948 5.6658 4.2739
13 7 -0.8591 6.1946 4.6178
14 14 1.8647 6.6656 4.4325
15 1 2.1090 7.4072 3.1694
16 1 1.7266 7.6295 5.5537
17 1 3.0066 5.7548 4.7006
18 7 3.8443 1.6204 3.0844
19 7 4.7610 1.1086 2.3431
20 6 4.2975 0.9142 1.1311
21 7 4.9944 0.3820 0.0579
22 6 5.4380 -0.9877 0.3458
23 6 5.9850 -1.6258 -0.9362
24 6 7.0491 -0.7105 -1.5047
25 6 8.2209 -1.1746 -1.8619
26 6 6.7135 0.7595 -1.6460
27 6 6.1202 1.2459 -0.3188
28 1 -0.5398 0.9354 -0.0004
29 1 -0.5399 -0.9352 0.0004
30 1 1.8500 -0.9353 -0.0004
31 1 1.3590 2.1315 0.0935
32 1 2.6183 1.4043 -0.9330
33 1 0.7751 0.4534 3.7078
34 1 1.6673 1.4692 4.8656
35 1 -0.0087 1.8798 4.4279
36 1 2.3337 3.7551 4.2636
37 1 2.1166 4.3619 2.6044
38 1 -0.8949 7.1034 4.9549
39 1 6.2215 -0.9645 1.1033
40 1 4.5949 -1.5734 0.7123
41 1 5.1787 -1.7461 -1.6599
42 1 6.4210 -2.5979 -0.7059
43 1 8.9667 -0.5057 -2.2649
44 1 8.4410 -2.2265 -1.7533
45 1 5.9856 0.8951 -2.4457
46 1 7.6182 1.3234 -1.8729
47 1 5.7694 2.2717 -0.4317
48 1 6.8845 1.2065 0.4575
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001339498533.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:53:27
Heat of formation + Delta-G solvation = 114.840759 kcal
Electronic energy + Delta-G solvation = -27055.408393 eV
Core-core repulsion = 23533.479955 eV
Total energy + Delta-G solvation = -3521.928438 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.73842 -39.20638 -36.18502 -35.54889 -34.60818 -32.64723 -32.17470 -31.49664
-29.54901 -27.81946 -27.15460 -26.63722 -24.00200 -23.80130 -22.83019 -21.61549
-21.10262 -19.99945 -19.26015 -18.37184 -17.37478 -16.88577 -16.25109 -16.18345
-15.18831 -15.08325 -14.80481 -14.55306 -14.34290 -14.02988 -13.84216 -13.63166
-13.48800 -13.32472 -12.78047 -12.66155 -12.38777 -12.25060 -11.99358 -11.65534
-11.60869 -11.47837 -11.23668 -11.11816 -11.05619 -10.83557 -10.74778 -10.40078
-10.13216 -10.06832 -9.86442 -9.75425 -9.67283 -9.41726 -9.19087 -8.82132
-8.57642 -8.53549 -6.06866 -4.05373 1.80711 1.93817 2.01049 2.58671
3.17379 3.32056 3.40598 3.49537 3.66067 4.37210 4.41103 4.45949
4.61560 4.70751 4.81029 4.85017 4.89359 5.02941 5.04783 5.17365
5.18341 5.27396 5.34776 5.38936 5.41011 5.49973 5.52868 5.54294
5.67624 5.69092 5.71526 5.84954 5.94030 6.01544 6.15265 6.22779
6.29104 6.36980 6.48355 6.54314 6.57032 6.63380 6.70351 6.78159
6.99801 7.16054 7.35976 7.40842 7.73835 8.47344 8.95605 9.07451
9.55756 11.05693
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.017156 B = 0.003527 C = 0.003193
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.707973 B = 7936.879784 C = 8766.378917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.177 4.177
3 C 0.140 3.860
4 N -0.463 5.463
5 C 0.218 3.782
6 C 0.009 3.991
7 H 0.077 0.923
8 C -0.126 4.126
9 C 0.001 3.999
10 C -0.518 4.518
11 H 0.077 0.923
12 C 0.072 3.928
13 N -0.901 5.901
14 Si 0.872 3.128
15 H -0.279 1.279
16 H -0.287 1.287
17 H -0.261 1.261
18 N -0.289 5.289
19 N -0.312 5.312
20 C 0.320 3.680
21 N -0.461 5.461
22 C 0.073 3.927
23 C -0.081 4.081
24 C -0.120 4.120
25 C -0.196 4.196
26 C -0.081 4.081
27 C 0.070 3.930
28 H 0.106 0.894
29 H 0.104 0.896
30 H 0.111 0.889
31 H 0.101 0.899
32 H 0.105 0.895
33 H 0.034 0.966
34 H 0.059 0.941
35 H 0.080 0.920
36 H 0.032 0.968
37 H 0.008 0.992
38 H 0.263 0.737
39 H 0.054 0.946
40 H 0.076 0.924
41 H 0.082 0.918
42 H 0.078 0.922
43 H 0.098 0.902
44 H 0.098 0.902
45 H 0.082 0.918
46 H 0.078 0.922
47 H 0.078 0.922
48 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.973 -15.913 -15.871 25.011
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.196 4.196
3 C 0.017 3.983
4 N -0.155 5.155
5 C -0.049 4.049
6 C -0.012 4.012
7 H 0.096 0.904
8 C -0.184 4.184
9 C -0.038 4.038
10 C -0.556 4.556
11 H 0.095 0.905
12 C -0.130 4.130
13 N -0.540 5.540
14 Si 0.699 3.301
15 H -0.205 1.205
16 H -0.213 1.213
17 H -0.186 1.186
18 N -0.129 5.129
19 N -0.156 5.156
20 C -0.036 4.036
21 N -0.186 5.186
22 C -0.054 4.054
23 C -0.118 4.118
24 C -0.120 4.120
25 C -0.233 4.233
26 C -0.118 4.118
27 C -0.057 4.057
28 H 0.124 0.876
29 H 0.122 0.878
30 H 0.129 0.871
31 H 0.120 0.880
32 H 0.123 0.877
33 H 0.053 0.947
34 H 0.078 0.922
35 H 0.098 0.902
36 H 0.050 0.950
37 H 0.027 0.973
38 H 0.073 0.927
39 H 0.072 0.928
40 H 0.095 0.905
41 H 0.100 0.900
42 H 0.096 0.904
43 H 0.116 0.884
44 H 0.116 0.884
45 H 0.101 0.899
46 H 0.097 0.903
47 H 0.097 0.903
48 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 11.558 -15.743 -15.043 24.652
hybrid contribution 0.421 0.629 -0.520 0.919
sum 11.979 -15.114 -15.563 24.782
Atomic orbital electron populations
1.24011 0.95544 1.02790 0.97307 1.22988 0.96152 0.97812 1.02665
1.20915 0.91770 0.97423 0.88160 1.46413 1.10301 1.47328 1.11435
1.25668 0.99845 0.99064 0.80366 1.19758 0.85968 0.97499 0.98007
0.90428 1.21670 1.02720 0.96652 0.97364 1.19600 0.98551 0.89088
0.96528 1.21010 0.92613 0.98688 1.43287 0.90534 1.24935 0.95807
0.97597 0.94665 1.69895 1.24480 1.15348 1.44241 0.86884 0.84907
0.80399 0.77901 1.20452 1.21260 1.18562 1.74061 0.97114 1.16641
1.25043 1.74543 1.24195 1.16918 0.99904 1.22111 0.84700 1.04366
0.92408 1.58329 1.25879 1.03037 1.31399 1.22101 0.99861 0.86550
0.96890 1.20911 0.97359 0.97018 0.96522 1.21970 0.95642 0.95823
0.98581 1.23606 0.96355 1.01045 1.02280 1.20907 1.01064 0.92663
0.97176 1.22142 0.90889 0.95946 0.96717 0.87620 0.87791 0.87067
0.88034 0.87736 0.94712 0.92158 0.90151 0.95010 0.97323 0.92675
0.92771 0.90518 0.89972 0.90375 0.88392 0.88410 0.89950 0.90325
0.90346 0.92744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.54 14.32 29.01 0.42 -1.12 16
2 C -0.18 -1.89 9.85 -36.03 -0.35 -2.25 16
3 C 0.14 1.69 6.31 -5.20 -0.03 1.66 16
4 N -0.46 -7.33 2.79 -115.37 -0.32 -7.65 16
5 C 0.22 4.16 6.58 -154.01 -1.01 3.14 16
6 C 0.01 0.17 2.70 -91.77 -0.25 -0.08 16
7 H 0.08 1.42 6.96 -51.93 -0.36 1.06 16
8 C -0.13 -2.36 8.98 37.16 0.33 -2.03 16
9 C 0.00 0.02 3.50 -27.89 -0.10 -0.08 16
10 C -0.52 -14.11 8.96 -34.44 -0.31 -14.42 16
11 H 0.08 2.18 7.30 -52.49 -0.38 1.79 16
12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
13 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16
14 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16
15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
17 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16
18 N -0.29 -6.12 12.18 32.99 0.40 -5.72 16
19 N -0.31 -6.01 12.19 30.31 0.37 -5.64 16
20 C 0.32 5.10 6.35 -318.87 -2.03 3.07 16
21 N -0.46 -5.64 4.59 -174.26 -0.80 -6.44 16
22 C 0.07 0.79 5.42 -3.71 -0.02 0.77 16
23 C -0.08 -0.65 6.21 -27.37 -0.17 -0.82 16
24 C -0.12 -0.99 5.42 -100.34 -0.54 -1.54 16
25 C -0.20 -1.44 14.01 29.02 0.41 -1.03 16
26 C -0.08 -0.68 6.21 -27.37 -0.17 -0.84 16
27 C 0.07 0.79 5.44 -3.71 -0.02 0.77 16
28 H 0.11 1.02 7.84 -52.49 -0.41 0.61 16
29 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16
30 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16
31 H 0.10 1.22 6.92 -51.92 -0.36 0.87 16
32 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16
33 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16
34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16
35 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16
36 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16
37 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16
38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
39 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16
40 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16
41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
42 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16
43 H 0.10 0.64 7.95 -52.49 -0.42 0.22 16
44 H 0.10 0.63 7.95 -52.48 -0.42 0.21 16
45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
46 H 0.08 0.57 7.93 -51.93 -0.41 0.15 16
47 H 0.08 0.92 8.06 -51.93 -0.42 0.51 16
48 H 0.05 0.68 8.10 -51.92 -0.42 0.26 16
LS Contribution 389.60 15.07 5.87 5.87
Total: -1.00 -32.26 389.60 -10.43 -42.69
By element:
Atomic # 1 Polarization: 6.94 SS G_CDS: -8.11 Total: -1.17 kcal
Atomic # 6 Polarization: -8.90 SS G_CDS: -3.95 Total: -12.85 kcal
Atomic # 7 Polarization: -52.24 SS G_CDS: 0.42 Total: -51.82 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -32.26 -10.43 -42.69 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001339498533.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 157.531 kcal
(2) G-P(sol) polarization free energy of solvation -32.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.267 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal
(6) G-S(sol) free energy of system = (1) + (5) 114.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds