Wall clock time and date at job start Tue Mar 31 2020 11:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 120.00651 * 2 1 4 4 N 1.46493 * 109.47155 * 125.21848 * 3 2 1 5 5 C 1.36743 * 127.14091 * 270.84609 * 4 3 2 6 6 C 1.50701 * 126.34333 * 0.02562 * 5 4 3 7 7 H 1.08994 * 109.47317 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.46640 * 120.00213 * 6 5 4 9 9 C 1.53003 * 109.47168 * 239.99812 * 6 5 4 10 10 C 1.50693 * 109.46894 * 175.00372 * 9 6 5 11 11 H 1.07993 * 120.00488 * 359.97438 * 10 9 6 12 12 C 1.37885 * 119.99870 * 180.02562 * 10 9 6 13 13 N 1.31511 * 119.99933 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99846 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47024 * 89.99834 * 14 12 10 16 16 H 1.48500 * 109.47156 * 209.99908 * 14 12 10 17 17 H 1.48503 * 109.46867 * 329.99812 * 14 12 10 18 18 N 1.30296 * 107.30841 * 180.02562 * 5 4 3 19 19 N 1.28531 * 110.04903 * 359.76914 * 18 5 4 20 20 C 1.31210 * 109.86377 * 0.38640 * 19 18 5 21 21 N 1.38584 * 126.47638 * 179.88750 * 20 19 18 22 22 C 1.46829 * 111.00106 * 61.10832 * 21 20 19 23 23 C 1.53293 * 109.40130 * 170.25074 * 22 21 20 24 24 C 1.51443 * 108.24289 * 53.79316 * 23 22 21 25 25 C 1.30998 * 121.11064 * 130.95143 * 24 23 22 26 26 C 1.51435 * 117.77568 * 310.97323 * 24 23 22 27 27 C 1.46826 * 110.99739 * 296.42595 * 21 20 19 28 28 H 1.08000 * 119.99085 * 0.02562 * 1 2 3 29 29 H 1.07990 * 119.99959 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99951 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46729 * 5.22143 * 3 2 1 32 32 H 1.08997 * 109.47056 * 245.22329 * 3 2 1 33 33 H 1.09000 * 109.47257 * 299.99407 * 8 6 5 34 34 H 1.08996 * 109.47894 * 60.00134 * 8 6 5 35 35 H 1.09005 * 109.47214 * 180.02562 * 8 6 5 36 36 H 1.09001 * 109.46876 * 295.00155 * 9 6 5 37 37 H 1.08993 * 109.46734 * 54.99880 * 9 6 5 38 38 H 0.97003 * 119.99777 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.48075 * 290.23219 * 22 21 20 40 40 H 1.08999 * 109.47973 * 50.27381 * 22 21 20 41 41 H 1.09006 * 109.70772 * 294.11065 * 23 22 21 42 42 H 1.08999 * 109.71345 * 173.48357 * 23 22 21 43 43 H 1.07990 * 120.00052 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.99815 * 0.02562 * 25 24 23 45 45 H 1.08991 * 109.71173 * 289.33645 * 26 24 23 46 46 H 1.08998 * 109.73800 * 168.73305 * 26 24 23 47 47 H 1.08998 * 109.48450 * 309.73023 * 27 21 20 48 48 H 1.09008 * 109.48692 * 69.75668 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 7 2.9976 1.3296 1.1283 5 6 2.7480 1.7740 2.3972 6 6 1.4462 2.3371 2.9063 7 1 0.7119 2.3403 2.1008 8 6 0.9332 1.4728 4.0599 9 6 1.6680 3.7680 3.4006 10 6 0.3458 4.3737 3.7952 11 1 -0.5620 3.7961 3.7024 12 6 0.2948 5.6658 4.2739 13 7 -0.8591 6.1946 4.6178 14 14 1.8647 6.6656 4.4325 15 1 2.1090 7.4072 3.1694 16 1 1.7266 7.6295 5.5537 17 1 3.0066 5.7548 4.7006 18 7 3.8443 1.6204 3.0844 19 7 4.7610 1.1086 2.3431 20 6 4.2975 0.9142 1.1311 21 7 4.9944 0.3820 0.0579 22 6 5.4380 -0.9877 0.3458 23 6 5.9850 -1.6258 -0.9362 24 6 7.0491 -0.7105 -1.5047 25 6 8.2209 -1.1746 -1.8619 26 6 6.7135 0.7595 -1.6460 27 6 6.1202 1.2459 -0.3188 28 1 -0.5398 0.9354 -0.0004 29 1 -0.5399 -0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3590 2.1315 0.0935 32 1 2.6183 1.4043 -0.9330 33 1 0.7751 0.4534 3.7078 34 1 1.6673 1.4692 4.8656 35 1 -0.0087 1.8798 4.4279 36 1 2.3337 3.7551 4.2636 37 1 2.1166 4.3619 2.6044 38 1 -0.8949 7.1034 4.9549 39 1 6.2215 -0.9645 1.1033 40 1 4.5949 -1.5734 0.7123 41 1 5.1787 -1.7461 -1.6599 42 1 6.4210 -2.5979 -0.7059 43 1 8.9667 -0.5057 -2.2649 44 1 8.4410 -2.2265 -1.7533 45 1 5.9856 0.8951 -2.4457 46 1 7.6182 1.3234 -1.8729 47 1 5.7694 2.2717 -0.4317 48 1 6.8845 1.2065 0.4575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339498533.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:26 Heat of formation + Delta-G solvation = 98.766410 kcal Electronic energy + Delta-G solvation = -27056.105429 eV Core-core repulsion = 23533.479955 eV Total energy + Delta-G solvation = -3522.625474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.08917 -40.07996 -37.42048 -36.94362 -35.60662 -34.29825 -33.64206 -32.26098 -30.81788 -29.48211 -28.34930 -27.63716 -25.72655 -24.57488 -23.93434 -23.17853 -22.15676 -20.97618 -20.63409 -19.18923 -19.08462 -18.33051 -17.42429 -17.36313 -16.34270 -16.04457 -15.96307 -15.73752 -15.46524 -15.40164 -15.21661 -14.70543 -14.58532 -14.45322 -14.15248 -13.89857 -13.55947 -13.43205 -13.13797 -12.97418 -12.89178 -12.70104 -12.60174 -12.42467 -12.31381 -12.03825 -11.92169 -11.87017 -11.76328 -11.58999 -11.43137 -11.26838 -11.08070 -10.75979 -10.51860 -10.15894 -10.01735 -9.76911 -8.28456 -6.29783 0.64835 0.90357 1.30558 1.35396 1.35652 1.47754 1.55746 1.73405 2.34912 2.62550 3.07067 3.35852 3.64966 3.67303 3.71041 3.81513 3.87822 4.04439 4.09974 4.22399 4.23511 4.32259 4.34488 4.36536 4.47117 4.53283 4.53990 4.63153 4.66804 4.75970 4.85297 4.94711 4.98345 5.01840 5.02441 5.08575 5.09486 5.13119 5.20574 5.32480 5.45399 5.52519 5.58634 5.62530 5.66237 5.68821 5.74425 5.95831 6.20025 6.27499 6.75873 7.34112 7.67388 8.86850 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.017156 B = 0.003527 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.707973 B = 7936.879784 C = 8766.378917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.187 4.187 3 C 0.133 3.867 4 N -0.457 5.457 5 C 0.206 3.794 6 C 0.018 3.982 7 H 0.093 0.907 8 C -0.118 4.118 9 C 0.008 3.992 10 C -0.512 4.512 11 H 0.057 0.943 12 C 0.019 3.981 13 N -0.941 5.941 14 Si 0.927 3.073 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.264 1.264 18 N -0.325 5.325 19 N -0.347 5.347 20 C 0.340 3.660 21 N -0.451 5.451 22 C 0.073 3.927 23 C -0.071 4.071 24 C -0.140 4.140 25 C -0.185 4.185 26 C -0.071 4.071 27 C 0.070 3.930 28 H 0.105 0.895 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.014 0.986 37 H 0.005 0.995 38 H 0.266 0.734 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 -17.322 -18.250 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.206 4.206 3 C 0.013 3.987 4 N -0.148 5.148 5 C -0.062 4.062 6 C -0.003 4.003 7 H 0.111 0.889 8 C -0.176 4.176 9 C -0.030 4.030 10 C -0.550 4.550 11 H 0.075 0.925 12 C -0.179 4.179 13 N -0.582 5.582 14 Si 0.753 3.247 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.188 1.188 18 N -0.165 5.165 19 N -0.191 5.191 20 C -0.017 4.017 21 N -0.177 5.177 22 C -0.054 4.054 23 C -0.108 4.108 24 C -0.140 4.140 25 C -0.222 4.222 26 C -0.109 4.109 27 C -0.057 4.057 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.032 0.968 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.088 0.912 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.671 -17.164 -17.446 27.559 hybrid contribution 0.079 0.980 0.144 0.993 sum 12.750 -16.184 -17.302 26.904 Atomic orbital electron populations 1.24202 0.95258 1.03692 0.95414 1.22891 0.96389 0.97048 1.04302 1.21230 0.91592 0.98456 0.87453 1.46565 1.10733 1.46277 1.11208 1.25277 0.99077 1.00182 0.81690 1.19525 0.86968 0.95121 0.98721 0.88899 1.21568 1.01448 0.97887 0.96722 1.19431 0.96163 0.91714 0.95706 1.21247 0.93358 0.98391 1.42052 0.92451 1.25668 0.98400 0.98956 0.94844 1.70002 1.26369 1.15962 1.45838 0.85995 0.81310 0.79050 0.78367 1.19337 1.20678 1.18821 1.73958 0.98107 1.17731 1.26680 1.74469 1.24570 1.18658 1.01406 1.22514 0.84765 1.02104 0.92327 1.58660 1.26163 1.03752 1.29174 1.22168 0.99277 0.85639 0.98268 1.20875 0.97594 0.97375 0.94960 1.22003 0.96251 0.95665 1.00106 1.23802 0.95820 1.01848 1.00691 1.20865 1.01596 0.93083 0.95310 1.22194 0.89994 0.95587 0.97951 0.87626 0.86016 0.86740 0.88019 0.85973 0.92146 0.93473 0.91411 0.96770 0.97660 0.92484 0.94409 0.90833 0.89167 0.88744 0.87560 0.87348 0.89203 0.88948 0.91229 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.19 -3.59 9.85 25.64 0.25 -3.34 16 3 C 0.13 2.99 6.31 85.63 0.54 3.53 16 4 N -0.46 -14.04 2.79 -518.91 -1.45 -15.49 16 5 C 0.21 7.84 6.58 137.64 0.91 8.74 16 6 C 0.02 0.69 2.70 -11.54 -0.03 0.66 16 7 H 0.09 3.32 6.96 -2.39 -0.02 3.30 16 8 C -0.12 -4.41 8.98 71.98 0.65 -3.77 16 9 C 0.01 0.40 3.50 29.85 0.10 0.50 16 10 C -0.51 -28.26 8.96 25.60 0.23 -28.03 16 11 H 0.06 3.33 7.30 -2.91 -0.02 3.30 16 12 C 0.02 1.10 5.47 84.66 0.46 1.57 16 13 N -0.94 -57.46 13.96 21.45 0.30 -57.17 16 14 Si 0.93 45.56 27.47 68.60 1.88 47.45 16 15 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 17 H -0.26 -12.96 6.54 99.48 0.65 -12.31 16 18 N -0.33 -13.93 12.18 -49.53 -0.60 -14.54 16 19 N -0.35 -13.53 12.19 -58.00 -0.71 -14.23 16 20 C 0.34 10.63 6.35 260.11 1.65 12.29 16 21 N -0.45 -10.50 4.59 -705.24 -3.23 -13.73 16 22 C 0.07 1.48 5.42 86.42 0.47 1.95 16 23 C -0.07 -0.96 6.21 30.18 0.19 -0.77 16 24 C -0.14 -1.95 5.42 -16.01 -0.09 -2.04 16 25 C -0.19 -2.15 14.01 67.78 0.95 -1.20 16 26 C -0.07 -1.03 6.21 30.18 0.19 -0.84 16 27 C 0.07 1.49 5.44 86.42 0.47 1.96 16 28 H 0.11 1.80 7.84 -2.91 -0.02 1.78 16 29 H 0.12 1.63 8.06 -2.92 -0.02 1.61 16 30 H 0.11 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.10 2.29 6.92 -2.38 -0.02 2.27 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.67 6.95 -2.38 -0.02 2.66 16 36 H 0.01 0.72 7.20 -2.39 -0.02 0.71 16 37 H 0.01 0.25 7.57 -2.39 -0.02 0.23 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 40 H 0.07 1.52 8.06 -2.39 -0.02 1.50 16 41 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.09 1.00 7.93 -2.39 -0.02 0.98 16 43 H 0.11 1.06 7.95 -2.92 -0.02 1.03 16 44 H 0.11 1.03 7.95 -2.91 -0.02 1.01 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.09 1.10 7.93 -2.39 -0.02 1.08 16 47 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 48 H 0.04 0.94 8.10 -2.38 -0.02 0.92 16 Total: -1.00 -70.28 389.60 4.96 -65.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.86 Total: 12.71 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 7.91 Total: -10.31 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -5.69 Total: -115.16 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.45 kcal Total: -70.28 4.96 -65.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339498533.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.086 kcal (2) G-P(sol) polarization free energy of solvation -70.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds