Wall clock time and date at job start Tue Mar 31 2020 11:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 119.99873 * 2 1 4 4 N 1.46498 * 109.47310 * 124.72187 * 3 2 1 5 5 C 1.36740 * 127.13605 * 88.50372 * 4 3 2 6 6 C 1.50699 * 126.34833 * 0.02562 * 5 4 3 7 7 H 1.08999 * 109.47027 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.47016 * 239.99843 * 6 5 4 9 9 C 1.53000 * 109.47510 * 119.99601 * 6 5 4 10 10 C 1.50697 * 109.47191 * 184.99971 * 9 6 5 11 11 H 1.07996 * 120.00345 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99915 * 179.97438 * 10 9 6 13 13 N 1.31520 * 119.99832 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00144 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47019 * 90.00561 * 14 12 10 16 16 H 1.48503 * 109.47341 * 210.00296 * 14 12 10 17 17 H 1.48494 * 109.47315 * 330.00395 * 14 12 10 18 18 N 1.30294 * 107.30193 * 179.97438 * 5 4 3 19 19 N 1.28523 * 110.05609 * 0.02562 * 18 5 4 20 20 C 1.31217 * 109.85971 * 359.74871 * 19 18 5 21 21 N 1.38577 * 126.47461 * 180.25635 * 20 19 18 22 22 C 1.46835 * 111.00089 * 62.75813 * 21 20 19 23 23 C 1.53292 * 109.40028 * 170.25035 * 22 21 20 24 24 C 1.51433 * 108.24634 * 53.78909 * 23 22 21 25 25 C 1.31004 * 121.10799 * 130.95156 * 24 23 22 26 26 C 1.51430 * 117.77886 * 310.97704 * 24 23 22 27 27 C 1.46829 * 111.00269 * 298.07233 * 21 20 19 28 28 H 1.08004 * 120.00211 * 0.28435 * 1 2 3 29 29 H 1.07997 * 120.00147 * 180.27608 * 1 2 3 30 30 H 1.08004 * 119.99685 * 179.71643 * 2 1 3 31 31 H 1.08998 * 109.46540 * 244.72236 * 3 2 1 32 32 H 1.08994 * 109.46851 * 4.71585 * 3 2 1 33 33 H 1.08999 * 109.46932 * 299.99702 * 8 6 5 34 34 H 1.08993 * 109.47247 * 59.99807 * 8 6 5 35 35 H 1.08993 * 109.46976 * 179.97438 * 8 6 5 36 36 H 1.09000 * 109.46575 * 304.99823 * 9 6 5 37 37 H 1.08997 * 109.46610 * 64.99383 * 9 6 5 38 38 H 0.97002 * 119.99901 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.48109 * 290.22840 * 22 21 20 40 40 H 1.09003 * 109.48092 * 50.27048 * 22 21 20 41 41 H 1.09004 * 109.71075 * 294.10286 * 23 22 21 42 42 H 1.08998 * 109.71039 * 173.48025 * 23 22 21 43 43 H 1.08001 * 120.00059 * 180.02562 * 25 24 23 44 44 H 1.08001 * 120.00198 * 0.02562 * 25 24 23 45 45 H 1.08995 * 109.71137 * 289.33530 * 26 24 23 46 46 H 1.09009 * 109.74648 * 168.73163 * 26 24 23 47 47 H 1.09004 * 109.48200 * 309.73519 * 27 21 20 48 48 H 1.09004 * 109.48222 * 69.75431 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9890 1.3347 1.1352 5 6 4.2775 0.8777 1.1620 6 6 5.0235 0.2416 0.0176 7 1 4.3753 0.1951 -0.8575 8 6 5.4505 -1.1740 0.4111 9 6 6.2636 1.0759 -0.3095 10 6 6.9420 0.5102 -1.5304 11 1 6.5298 -0.3574 -2.0240 12 6 8.0885 1.1009 -2.0179 13 7 8.5903 2.1578 -1.4171 14 14 8.9299 0.3992 -3.5308 15 1 8.3773 1.0448 -4.7487 16 1 10.3897 0.6603 -3.4513 17 1 8.6918 -1.0651 -3.5953 18 7 4.7409 1.0951 2.3602 19 7 3.8398 1.6536 3.0867 20 6 2.7458 1.8287 2.3837 21 7 1.5654 2.4043 2.8263 22 6 1.7746 3.8066 3.2081 23 6 0.4174 4.4745 3.4568 24 6 -0.3443 3.6395 4.4647 25 6 -0.9096 4.1899 5.5105 26 6 -0.4300 2.1469 4.2238 27 6 0.9810 1.6269 3.9263 28 1 -0.5401 0.9353 -0.0046 29 1 -0.5400 -0.9353 0.0045 30 1 1.8500 -0.9354 0.0046 31 1 2.6251 1.4003 -0.9293 32 1 1.3582 2.1318 0.0845 33 1 6.0986 -1.1279 1.2863 34 1 4.5671 -1.7684 0.6441 35 1 5.9897 -1.6342 -0.4168 36 1 5.9670 2.1067 -0.5035 37 1 6.9526 1.0488 0.5346 38 1 9.3971 2.5731 -1.7598 39 1 2.3734 3.8502 4.1177 40 1 2.2947 4.3284 2.4047 41 1 -0.1435 4.5262 2.5236 42 1 0.5689 5.4792 3.8514 43 1 -1.4482 3.5773 6.2183 44 1 -0.8372 5.2564 5.6648 45 1 -1.0818 1.9487 3.3729 46 1 -0.8244 1.6526 5.1117 47 1 0.9287 0.5761 3.6412 48 1 1.6024 1.7317 4.8157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339498536.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:30 Heat of formation + Delta-G solvation = 111.721121 kcal Electronic energy + Delta-G solvation = -26991.965269 eV Core-core repulsion = 23469.901553 eV Total energy + Delta-G solvation = -3522.063716 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.62641 -39.12955 -36.10411 -35.44841 -34.53024 -32.62103 -32.13516 -31.42753 -29.40983 -27.44084 -26.85966 -26.58619 -24.08164 -23.72852 -22.76280 -21.90600 -20.84191 -20.15165 -19.18132 -18.30509 -17.27417 -16.53634 -16.16635 -15.93827 -15.17836 -15.07422 -14.66609 -14.65521 -14.49640 -13.98294 -13.82645 -13.56487 -13.27994 -13.14148 -12.70951 -12.45494 -12.43728 -12.14041 -11.78474 -11.63318 -11.54223 -11.37801 -11.11576 -11.05251 -10.94691 -10.74391 -10.68511 -10.48873 -10.32305 -9.96295 -9.86169 -9.69454 -9.58919 -9.35705 -9.12133 -8.72886 -8.42776 -8.36121 -6.00751 -4.04443 1.84060 1.98871 2.10360 2.65084 3.29891 3.30682 3.37842 3.40177 3.75911 4.43041 4.43418 4.47601 4.62619 4.75672 4.89241 4.91877 4.98920 5.09766 5.09854 5.24440 5.25807 5.34577 5.40040 5.41809 5.49512 5.56577 5.60084 5.60812 5.66076 5.74362 5.79289 5.92577 6.03775 6.10045 6.24747 6.26977 6.34222 6.35849 6.52041 6.59882 6.65597 6.69692 6.82880 6.92331 7.05289 7.47741 7.61807 7.78275 7.98483 8.34369 9.01143 9.19705 9.59135 11.10310 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.003151 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.065526 B = 8882.912481 C = 9419.499624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.171 4.171 3 C 0.140 3.860 4 N -0.464 5.464 5 C 0.220 3.780 6 C -0.002 4.002 7 H 0.073 0.927 8 C -0.125 4.125 9 C 0.038 3.962 10 C -0.520 4.520 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 N -0.287 5.287 19 N -0.312 5.312 20 C 0.320 3.680 21 N -0.460 5.460 22 C 0.070 3.930 23 C -0.080 4.080 24 C -0.119 4.119 25 C -0.197 4.197 26 C -0.080 4.080 27 C 0.074 3.926 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.013 0.987 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.145 0.511 7.501 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.190 4.190 3 C 0.017 3.983 4 N -0.156 5.156 5 C -0.047 4.047 6 C -0.024 4.024 7 H 0.091 0.909 8 C -0.183 4.183 9 C 0.000 4.000 10 C -0.559 4.559 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.719 3.281 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.126 5.126 19 N -0.156 5.156 20 C -0.036 4.036 21 N -0.185 5.185 22 C -0.057 4.057 23 C -0.118 4.118 24 C -0.119 4.119 25 C -0.234 4.234 26 C -0.117 4.117 27 C -0.053 4.053 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.372 0.677 8.294 22.935 hybrid contribution 0.064 -0.211 -1.341 1.359 sum -21.308 0.466 6.953 22.418 Atomic orbital electron populations 1.23867 0.95453 1.02192 0.98643 1.23112 0.96315 0.98147 1.01408 1.20885 0.92003 0.97264 0.88143 1.46392 1.12509 1.45858 1.10885 1.25676 0.81425 0.99364 0.98227 1.20008 0.97494 0.95936 0.88919 0.90919 1.21667 0.99850 0.94032 1.02757 1.19106 0.89703 0.93792 0.97357 1.21133 1.09680 1.13550 1.11496 0.92327 1.25004 0.97169 0.94977 0.97124 1.69985 1.21854 1.20939 1.40117 0.86606 0.78827 0.79441 0.83187 1.20755 1.21221 1.19799 1.74066 1.21931 1.15806 1.00787 1.74547 0.98046 1.16928 1.26055 1.22079 0.93379 1.03627 0.84484 1.58306 1.19861 1.02742 1.37641 1.22141 0.96855 0.85768 1.00961 1.20908 0.94689 0.97499 0.98697 1.21977 0.97847 0.95734 0.96364 1.23601 1.01446 1.00685 0.97654 1.20899 0.96310 0.92342 1.02197 1.22086 0.94620 0.96934 0.91709 0.88120 0.88041 0.86747 0.87697 0.88114 0.92053 0.95054 0.90633 0.96841 0.94951 0.92919 0.92734 0.90300 0.90016 0.90338 0.88449 0.88406 0.90024 0.90453 0.90535 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 14.32 29.01 0.42 -1.02 16 2 C -0.17 -1.88 9.85 -36.03 -0.35 -2.23 16 3 C 0.14 1.77 6.29 -5.19 -0.03 1.73 16 4 N -0.46 -7.70 2.79 -115.37 -0.32 -8.02 16 5 C 0.22 4.39 6.58 -154.01 -1.01 3.37 16 6 C 0.00 -0.05 2.71 -91.77 -0.25 -0.30 16 7 H 0.07 1.36 6.98 -51.93 -0.36 0.99 16 8 C -0.12 -2.36 8.99 37.16 0.33 -2.02 16 9 C 0.04 0.99 4.43 -27.88 -0.12 0.86 16 10 C -0.52 -14.06 8.41 -34.44 -0.29 -14.35 16 11 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 14 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 N -0.29 -6.36 12.18 32.99 0.40 -5.96 16 19 N -0.31 -6.30 12.19 30.31 0.37 -5.93 16 20 C 0.32 5.36 6.35 -318.89 -2.03 3.33 16 21 N -0.46 -5.93 4.59 -174.26 -0.80 -6.73 16 22 C 0.07 0.83 5.43 -3.71 -0.02 0.81 16 23 C -0.08 -0.71 6.21 -27.37 -0.17 -0.88 16 24 C -0.12 -1.04 5.41 -100.35 -0.54 -1.58 16 25 C -0.20 -1.52 14.01 29.01 0.41 -1.11 16 26 C -0.08 -0.68 6.20 -27.37 -0.17 -0.85 16 27 C 0.07 0.84 5.43 -3.71 -0.02 0.82 16 28 H 0.10 0.78 7.84 -52.48 -0.41 0.37 16 29 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.10 1.33 7.29 -51.93 -0.38 0.95 16 32 H 0.10 1.11 7.79 -51.93 -0.40 0.71 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.61 7.93 -51.93 -0.41 0.19 16 43 H 0.10 0.66 7.95 -52.49 -0.42 0.24 16 44 H 0.10 0.68 7.95 -52.49 -0.42 0.26 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.56 7.93 -51.92 -0.41 0.15 16 47 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 48 H 0.05 0.68 8.10 -51.93 -0.42 0.25 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -32.20 393.23 -10.80 -43.00 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.14 Total: -0.67 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.95 Total: -11.86 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.39 Total: -52.56 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.20 -10.80 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339498536.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.721 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds